FvH4_3g34510

Phosphatidylinositol 4-kinase gamma

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
29911122 .. 29911526
405 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34510.t1

Sequence Viewer

Length: 405 bp
ATGATATATGGTGTACTTTTCATATGTATATGCAAGTATGGTAACATGACATTTGAGTGGCTATATTGGGATCAAGCTAATCTGCCGTATGGCTCGGACGTTGTTGAATACATCAACTCTTTAGATGCTGAGATTGATATACAACTATTGAAGCGTTATGGGTGGAATATACCACATGGATGTGCACGGACTCTACGAATTTCCACTATGCTTTTCAAGAAGGGGGCAAAGAGAGGACTCTCTCCCTTTGACCTCGGAAGCATCATTTCCAAGACAGGTTGTAATACACTATCTCTCATTAAAAAGATCATGCAAGAAGCAGAAGTAGCTAGTGAGGCCTCATTTACGAAAACGGTGTCATCCATCATGGATCGACACCTTGCCAGCAGATTTGGTGACCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.14

Weight (kDa)

8.35

Isoelectric Point (pI)

24.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019688)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 78, 378
AcsI RAATTY 1 cut(s) 198
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 3 cut(s) 107, 151, 217
AluBI AGCT 2 cut(s) 77, 329
AluI AGCT 2 cut(s) 77, 329
Alw21I GWGCWC 1 cut(s) 187
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 2 cut(s) 78, 378
AoxI GGCC 1 cut(s) 336
ApaLI GTGCAC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 198
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
BaeGI GKGCMC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 187
BccI CCATC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 70
BfaI CTAG 1 cut(s) 330
BmsI GCATC 2 cut(s) 115, 270
BsaJI CCNNGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 185, 359
BseMII CTCAG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 187
BshFI GGCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 187
BsnI GGCC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 3 cut(s) 70, 306, 370
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 121
BspPI GGATC 2 cut(s) 78, 378
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 70, 306, 370
Bst4CI ACNGT 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 395
BstF5I GGATG 2 cut(s) 185, 359
BstKTI GATC 3 cut(s) 73, 309, 373
BstMBI GATC 3 cut(s) 70, 306, 370
BstMWI GCNNNNNNNGC 2 cut(s) 326, 335
BstPI GGTNACC 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 338
BtsCI GGATG 2 cut(s) 185, 359
Cac8I GCNNGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 14
CviAII CATG 4 cut(s) 46, 176, 310, 367
CviJI RGCY 5 cut(s) 61, 77, 93, 329, 338
CviKI_1 RGCY 5 cut(s) 61, 77, 93, 329, 338
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 129
DpnI GATC 3 cut(s) 72, 308, 372
DpnII GATC 3 cut(s) 70, 306, 370
Eco147I AGGCCT 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 395
EcoO65I GGTNACC 1 cut(s) 395
FaeI CATG 4 cut(s) 49, 179, 313, 370
FatI CATG 4 cut(s) 45, 175, 309, 366
FauNDI CATATG 1 cut(s) 23
FokI GGATG 2 cut(s) 192, 346
FspBI CTAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 338
Hin1II CATG 4 cut(s) 49, 179, 313, 370
HinfI GANTC 2 cut(s) 190, 237
Hpy166II GTNNAC 2 cut(s) 14, 185
Hpy188I TCNGA 2 cut(s) 97, 257
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 2 cut(s) 14, 185
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 33, 185, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 335
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 4 cut(s) 49, 179, 313, 370
Kzo9I GATC 3 cut(s) 70, 306, 370
LpnPI CCDG 2 cut(s) 261, 397
LweI GCATC 2 cut(s) 115, 270
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 41, 395
MalI GATC 3 cut(s) 72, 308, 372
MboI GATC 3 cut(s) 70, 306, 370
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 198
MlyI GAGTC 2 cut(s) 184, 231
MnlI CCTC 4 cut(s) 227, 263, 328, 349
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 3 cut(s) 55, 178, 180
MwoI GCNNNNNNNGC 2 cut(s) 326, 335
NdeI CATATG 1 cut(s) 23
NdeII GATC 3 cut(s) 70, 306, 370
NlaIII CATG 4 cut(s) 49, 179, 313, 370
NmuCI GTSAC 1 cut(s) 395
PceI AGGCCT 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PleI GAGTC 2 cut(s) 184, 231
PpsI GAGTC 2 cut(s) 184, 231
PspEI GGTNACC 1 cut(s) 395
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 3 cut(s) 55, 178, 180
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 3 cut(s) 70, 306, 370
SchI GAGTC 2 cut(s) 184, 231
SduI GDGCHC 1 cut(s) 187
SetI ASST 7 cut(s) 79, 102, 255, 280, 331, 381, 402
SfaNI GCATC 2 cut(s) 115, 270
SmiMI CAYNNNNRTG 3 cut(s) 55, 178, 180
Sse9I AATT 1 cut(s) 198
SseBI AGGCCT 1 cut(s) 338
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 338
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 373
TasI AATT 1 cut(s) 198
TatI WGTACW 1 cut(s) 13
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 10
TspGWI ACGGA 1 cut(s) 202
VneI GTGCAC 1 cut(s) 183
XapI RAATTY 1 cut(s) 198
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.