FvH4_3g36220

Flowering-promoting factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017275
Physical Location & Seq
Reverse (-)
31037065 .. 31037822
758 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36220.t1

Sequence Viewer

Length: 387 bp
ATGTCCGGCGTCTGGATATTCTACAAAAACGGCGTCACTCGACTCATCCCAAACCCGACCCGAGAGTCCTTCGAGCAAATGGAACCGCCCTATCCGGGTACAGCCACGGCACCGGGAGCTCGACCCCGAGTCTTGATATACCTTCCGGCTAACCAGGTCATCCGGTCCTATACTGAACTCGAGCAGCGACTCACTGAAGTCGGCTGGACTCGCTACCGGCCCAACTCATTCTGCCAACCGGACCTGGTGCAATTCCACCGCTCGGAGCACTCGGCTCACCTCATCTCGCTCCCTGCAAACTTCGATCAGTTCAAGTCGTTTCATATGTACGACATCGTCGTCAAGAATAAATCCTTCTTTGAAGTTCGTGATCCTAATGCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.9

Weight (kDa)

8.82

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017275)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36220
malus_domestica MD00G1012500.v1.1 MD03G1092000.v1.1
prunus_persica Prupe.6G075900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065031
rosa_laevigata RLG00000035748
rosa_multiflora Rmu_sc0003352.1_g000027
rosa_roxburghii Rroxscaffold_1G00016290
rosa_rugosa Rorug05G0367100
rosa_samantha Rh5BG440900 Rh5CG463500 Rh5DG453700
rosa_wichuraiana Rw5G040000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 64, 338
AccB1I GGYRCC 1 cut(s) 109
AccBSI CCGCTC 1 cut(s) 261
AciI CCGC 2 cut(s) 86, 259
AclWI GGATC 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 2 cut(s) 9, 33
AfaI GTAC 2 cut(s) 100, 329
AfiI CCNNNNNNNGG 3 cut(s) 12, 95, 262
AgsI TTSAA 2 cut(s) 313, 362
AhdI GACNNNNNGTC 1 cut(s) 128
AjnI CCWGG 2 cut(s) 153, 243
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 2 cut(s) 121, 270
AlwI GGATC 1 cut(s) 365
Ama87I CYCGRG 3 cut(s) 60, 126, 179
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 184
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AspS9I GGNCC 3 cut(s) 165, 219, 241
AsuC2I CCSGG 2 cut(s) 96, 114
AsuHPI GGTGA 1 cut(s) 269
AvaI CYCGRG 3 cut(s) 60, 126, 179
AvaII GGWCC 2 cut(s) 165, 241
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 121, 270
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 2 cut(s) 46, 123
BciT130I CCWGG 2 cut(s) 155, 245
BcnI CCSGG 2 cut(s) 96, 114
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 4 cut(s) 96, 114, 155, 245
Bme18I GGWCC 2 cut(s) 165, 241
BmeRI GACNNNNNGTC 1 cut(s) 128
BmeT110I CYCGRG 3 cut(s) 60, 126, 179
BmgT120I GGNCC 3 cut(s) 165, 219, 241
BmiI GGNNCC 2 cut(s) 84, 111
BmrFI CCNGG 4 cut(s) 96, 114, 155, 245
BpuMI CCSGG 2 cut(s) 96, 114
BsaHI GRCGYC 2 cut(s) 9, 33
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 2 cut(s) 162, 238
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 95, 262
Bse118I RCCGGY 1 cut(s) 216
BseBI CCWGG 2 cut(s) 155, 245
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 45, 159
BseLI CCNNNNNNNGG 3 cut(s) 12, 95, 262
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 121, 270
BsiHKCI CYCGRG 3 cut(s) 60, 126, 179
BsiSI CCGG 7 cut(s) 6, 95, 113, 146, 163, 217, 239
BslI CCNNNNNNNGG 3 cut(s) 12, 95, 262
BsnI GGCC 1 cut(s) 220
BsoBI CYCGRG 3 cut(s) 60, 126, 179
Bsp1286I GDGCHC 2 cut(s) 121, 270
Bsp143I GATC 2 cut(s) 304, 370
BspACI CCGC 2 cut(s) 86, 259
BspANI GGCC 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 84, 111
BspPI GGATC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 304, 370
BssNI GRCGYC 2 cut(s) 9, 33
Bst2UI CCWGG 2 cut(s) 155, 245
BstACI GRCGYC 2 cut(s) 9, 33
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 45, 159
BstKTI GATC 2 cut(s) 307, 373
BstMBI GATC 2 cut(s) 304, 370
BstMWI GCNNNNNNNGC 2 cut(s) 116, 210
BstNI CCWGG 2 cut(s) 155, 245
BstSCI CCNGG 4 cut(s) 94, 112, 153, 243
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 45, 159
BtsIMutI CAGTG 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 3 cut(s) 165, 219, 241
CseI GACGC 1 cut(s) 22
CsiI ACCWGGT 2 cut(s) 153, 243
Csp6I GTAC 2 cut(s) 99, 328
CviJI RGCY 6 cut(s) 104, 119, 149, 204, 220, 275
CviKI_1 RGCY 6 cut(s) 104, 119, 149, 204, 220, 275
CviQI GTAC 2 cut(s) 99, 328
DpnI GATC 2 cut(s) 306, 372
DpnII GATC 2 cut(s) 304, 370
DrdI GACNNNNNNGTC 2 cut(s) 64, 338
DriI GACNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 2 cut(s) 64, 338
Eam1105I GACNNNNNGTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 165, 241
Eco53kI GAGCTC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 3 cut(s) 60, 126, 179
EcoICRI GAGCTC 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 153, 243
EcoT22I ATGCAT 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 121
FaiI YATR 5 cut(s) 139, 171, 324, 326, 385
FauNDI CATATG 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 32, 146
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 220
HapII CCGG 7 cut(s) 6, 95, 113, 146, 163, 217, 239
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 2 cut(s) 9, 33
HinfI GANTC 5 cut(s) 42, 65, 129, 189, 208
HpaII CCGG 7 cut(s) 6, 95, 113, 146, 163, 217, 239
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 4 cut(s) 13, 133, 343, 368
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 3 cut(s) 79, 152, 364
HpyCH4V TGCA 3 cut(s) 250, 296, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 210
Hsp92I GRCGYC 2 cut(s) 9, 33
Kzo9I GATC 2 cut(s) 304, 370
LmnI GCTCC 3 cut(s) 116, 265, 294
Lsp1109I GCAGC 1 cut(s) 196
MabI ACCWGGT 2 cut(s) 153, 243
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 306, 372
MbiI CCGCTC 1 cut(s) 261
MboI GATC 2 cut(s) 304, 370
MhlI GDGCHC 2 cut(s) 121, 270
MluCI AATT 1 cut(s) 251
MlyI GAGTC 5 cut(s) 36, 74, 138, 183, 202
MnlI CCTC 1 cut(s) 290
Mph1103I ATGCAT 1 cut(s) 382
MspI CCGG 7 cut(s) 6, 95, 113, 146, 163, 217, 239
MspR9I CCNGG 4 cut(s) 96, 114, 155, 245
MvaI CCWGG 2 cut(s) 155, 245
MwoI GCNNNNNNNGC 2 cut(s) 116, 210
NciI CCSGG 2 cut(s) 96, 114
NdeI CATATG 1 cut(s) 324
NdeII GATC 2 cut(s) 304, 370
NlaIV GGNNCC 2 cut(s) 84, 111
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PflFI GACNNNGTC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 5 cut(s) 36, 73, 137, 183, 202
PpsI GAGTC 5 cut(s) 36, 73, 137, 183, 202
Psp124BI GAGCTC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 153, 243
PspGI CCWGG 2 cut(s) 153, 243
PspN4I GGNNCC 2 cut(s) 84, 111
PspPI GGNCC 3 cut(s) 165, 219, 241
PspXI VCTCGAGB 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 2 cut(s) 100, 329
RsaNI GTAC 2 cut(s) 99, 328
SacI GAGCTC 1 cut(s) 121
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 304, 370
Sau96I GGNCC 3 cut(s) 165, 219, 241
SchI GAGTC 5 cut(s) 36, 74, 138, 183, 202
ScrFI CCNGG 4 cut(s) 96, 114, 155, 245
SduI GDGCHC 2 cut(s) 121, 270
SetI ASST 5 cut(s) 121, 144, 159, 246, 282
SexAI ACCWGGT 2 cut(s) 153, 243
Sfr274I CTCGAG 1 cut(s) 179
SinI GGWCC 2 cut(s) 165, 241
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 251
SsiI CCGC 2 cut(s) 86, 259
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 4 cut(s) 94, 112, 153, 243
TaqI TCGA 5 cut(s) 40, 72, 121, 180, 303
TasI AATT 1 cut(s) 251
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 165, 241
XhoI CTCGAG 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.