MD03G1092000.v1.1

Flowering-promoting factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0017275
Physical Location & Seq
Forward (+)
7715722 .. 7716108
387 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1092000.v1.1.491

Sequence Viewer

Length: 387 bp
ATGTCCGGAGTGTGGATATTTGACAGAAACGGCGTCGTTCGGCTGGTCACCAACCCAACCAGGGAGTCGTTCGAGCAAAAAGAGCCGCCGCATCCGGGTACAGCCACCTCACCCGGTGCTCGGCCCCGAGTCTTGGTCTACCTCCCAGCCAACCAGGTCATTCAATCCTACTCCGAACTCGAGCAGCGACTCACTGAACTCGGCTGGACTCGCTACCCCAACTCCAATCGGCCCGACCTCCTCCAGTTCCACCGCTCCGAGAACTCAGTCCACCTCATCTCGCTCCCAAATAATTTTGCCAACTTGAAGTCCTTCCATATGTACGACATCGTCGTCAAGAATCGCTCCTTCTTCGAAGTTCGTGACCCTGCTGCATTGCAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.75

Weight (kDa)

9.22

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017275)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36220
malus_domestica MD00G1012500.v1.1 MD03G1092000.v1.1
prunus_persica Prupe.6G075900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065031
rosa_laevigata RLG00000035748
rosa_multiflora Rmu_sc0003352.1_g000027
rosa_roxburghii Rroxscaffold_1G00016290
rosa_rugosa Rorug05G0367100
rosa_samantha Rh5BG440900 Rh5CG463500 Rh5DG453700
rosa_wichuraiana Rw5G040000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccBSI CCGCTC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 138
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 3 cut(s) 86, 89, 253
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 2 cut(s) 100, 323
AfiI CCNNNNNNNGG 5 cut(s) 12, 61, 95, 120, 133
AgsI TTSAA 2 cut(s) 164, 307
AjnI CCWGG 2 cut(s) 59, 153
Alw21I GWGCWC 1 cut(s) 121
Ama87I CYCGRG 2 cut(s) 126, 179
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 2 cut(s) 122, 230
ApeKI GCWGC 2 cut(s) 184, 371
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 123, 231
AsuC2I CCSGG 2 cut(s) 96, 114
AsuHPI GGTGA 2 cut(s) 40, 102
AsuII TTCGAA 1 cut(s) 354
AvaI CYCGRG 2 cut(s) 126, 179
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 196, 358
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 61, 155
BcnI CCSGG 2 cut(s) 96, 114
BfaI CTAG 1 cut(s) 385
BisI GCNGC 4 cut(s) 86, 89, 185, 372
BlsI GCNGC 4 cut(s) 87, 90, 186, 373
Bme1390I CCNGG 4 cut(s) 61, 96, 114, 155
BmeT110I CYCGRG 2 cut(s) 126, 179
BmgT120I GGNCC 2 cut(s) 123, 231
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 4 cut(s) 61, 96, 114, 155
BmsI GCATC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 2 cut(s) 96, 114
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 5 cut(s) 12, 61, 95, 120, 133
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 374
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 2 cut(s) 61, 155
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 5 cut(s) 12, 61, 95, 120, 133
BseMI GCAATG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 196, 358
BseYI CCCAGC 1 cut(s) 145
BshFI GGCC 2 cut(s) 124, 232
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 2 cut(s) 126, 179
BsiSI CCGG 3 cut(s) 6, 95, 114
BslI CCNNNNNNNGG 5 cut(s) 12, 61, 95, 120, 133
BsnI GGCC 2 cut(s) 124, 232
BsoBI CYCGRG 2 cut(s) 126, 179
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 121
Bsp13I TCCGGA 1 cut(s) 5
BspACI CCGC 3 cut(s) 86, 89, 253
BspANI GGCC 2 cut(s) 124, 232
BspCNI CTCAG 1 cut(s) 278
BspEI TCCGGA 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 354
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 374
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 61, 155
BstACI GRCGYC 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 265
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 82, 210
BstNI CCWGG 2 cut(s) 61, 155
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 4 cut(s) 59, 94, 112, 153
BstV1I GCAGC 2 cut(s) 196, 358
BsuRI GGCC 2 cut(s) 124, 232
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 123, 231
CseI GACGC 1 cut(s) 22
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 2 cut(s) 99, 322
CviJI RGCY 7 cut(s) 43, 85, 104, 124, 149, 204, 232
CviKI_1 RGCY 7 cut(s) 43, 85, 104, 124, 149, 204, 232
CviQI GTAC 2 cut(s) 99, 322
DdeI CTNAG 1 cut(s) 265
DraIII CACNNNGTG 1 cut(s) 116
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eco88I CYCGRG 2 cut(s) 126, 179
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 59, 153
FaiI YATR 2 cut(s) 318, 320
FauNDI CATATG 1 cut(s) 318
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 86, 89, 185, 372
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 4 cut(s) 86, 89, 185, 372
FspBI CTAG 1 cut(s) 385
GluI GCNGC 4 cut(s) 86, 89, 185, 372
GsaI CCCAGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 124, 232
HapII CCGG 3 cut(s) 6, 95, 114
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 33
HinfI GANTC 5 cut(s) 65, 129, 189, 208, 340
HpaII CCGG 3 cut(s) 6, 95, 114
HphI GGTGA 2 cut(s) 40, 102
Hpy166II GTNNAC 2 cut(s) 139, 271
Hpy188I TCNGA 2 cut(s) 175, 259
Hpy188III TCNNGA 3 cut(s) 6, 337, 362
Hpy8I GTNNAC 2 cut(s) 139, 271
Hpy99I CGWCG 2 cut(s) 38, 335
HpyAV CCTTC 2 cut(s) 322, 358
HpyCH4V TGCA 2 cut(s) 374, 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 210
HpyF3I CTNAG 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 33
Kpn2I TCCGGA 1 cut(s) 5
LmnI GCTCC 3 cut(s) 260, 288, 350
Lsp1109I GCAGC 2 cut(s) 196, 358
LweI GCATC 1 cut(s) 100
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 46, 362
MbiI CCGCTC 1 cut(s) 255
MboII GAAGA 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 1 cut(s) 292
MlyI GAGTC 4 cut(s) 74, 138, 183, 202
MnlI CCTC 5 cut(s) 118, 152, 248, 251, 284
MroI TCCGGA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 311
MspI CCGG 3 cut(s) 6, 95, 114
MspR9I CCNGG 4 cut(s) 61, 96, 114, 155
MvaI CCWGG 2 cut(s) 61, 155
MwoI GCNNNNNNNGC 2 cut(s) 82, 210
NciI CCSGG 2 cut(s) 96, 114
NdeI CATATG 1 cut(s) 318
NlaIV GGNNCC 1 cut(s) 125
NmeAIII GCCGAG 2 cut(s) 100, 180
NmuCI GTSAC 2 cut(s) 46, 362
NspV TTCGAA 1 cut(s) 354
PaeR7I CTCGAG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 340
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 4 cut(s) 87, 90, 186, 373
PleI GAGTC 4 cut(s) 73, 137, 183, 202
PpsI GAGTC 4 cut(s) 73, 137, 183, 202
Psp6I CCWGG 2 cut(s) 59, 153
PspEI GGTNACC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 2 cut(s) 59, 153
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 2 cut(s) 123, 231
PspXI VCTCGAGB 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 2 cut(s) 100, 323
RsaNI GTAC 2 cut(s) 99, 322
SatI GCNGC 4 cut(s) 86, 89, 185, 372
Sau96I GGNCC 2 cut(s) 123, 231
SchI GAGTC 4 cut(s) 74, 138, 183, 202
ScrFI CCNGG 4 cut(s) 61, 96, 114, 155
SduI GDGCHC 1 cut(s) 121
SetI ASST 5 cut(s) 110, 144, 159, 240, 276
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 179
SfuI TTCGAA 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 292
SsiI CCGC 3 cut(s) 86, 89, 253
SspMI CTAG 1 cut(s) 385
StyD4I CCNGG 4 cut(s) 59, 94, 112, 153
TaqI TCGA 3 cut(s) 72, 180, 354
TasI AATT 1 cut(s) 292
TauI GCSGC 2 cut(s) 88, 91
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 46, 362
TseI GCWGC 2 cut(s) 184, 371
Tsp45I GTSAC 2 cut(s) 46, 362
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 329
XhoI CTCGAG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.