Prupe.6G075900_v2.0.a1

Flowering-promoting factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017275
Physical Location & Seq
Forward (+)
5218751 .. 5219603
853 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G075900.1

Sequence Viewer

Length: 381 bp
ATGTCCGGGGTGTGGATATTTGACAAAAACGGCGTCGCTCGGCTGATCACGAACCCAACGAGGGAGTCTTTCGAGCAAAAAGAGCCGCCCTATCCCGGCACAGCCACTGCACCGGGGGCTCGACCACGGGTCTTGGTCTACCTCCCAGCCAACCAGGTCATTCGCTCCTACTCAGAACTCGAGCAGCGACTCACTGAACTCGGCTGGACTCGCTACCCCAACTCGCTCCGGCCCGACCTCTTGCAGTTCCACCGGTCTGAGAGCTCAGCCGACCTCATCTCGCTCCCCACAAACTTTGCCAACTTCAAATCCCTCCATATGTATGACATTGTTGTCAAGAATCGTTCCTTCTTTGAAGTTCGTGACCCTGCTGCCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.41

Weight (kDa)

9.09

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017275)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36220
malus_domestica MD00G1012500.v1.1 MD03G1092000.v1.1
prunus_persica Prupe.6G075900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065031
rosa_laevigata RLG00000035748
rosa_multiflora Rmu_sc0003352.1_g000027
rosa_roxburghii Rroxscaffold_1G00016290
rosa_rugosa Rorug05G0367100
rosa_samantha Rh5BG440900 Rh5CG463500 Rh5DG453700
rosa_wichuraiana Rw5G040000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 138
AciI CCGC 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 33
AfiI CCNNNNNNNGG 3 cut(s) 12, 61, 95
AgeI ACCGGT 1 cut(s) 252
AgsI TTSAA 2 cut(s) 307, 356
AhdI GACNNNNNGTC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Alw21I GWGCWC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 184, 371
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AsiGI ACCGGT 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 3 cut(s) 7, 96, 114
AvaI CYCGRG 1 cut(s) 179
BanII GRGCYC 2 cut(s) 121, 266
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 196, 358
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 155
BclI TGATCA 1 cut(s) 45
BcnI CCSGG 3 cut(s) 7, 96, 114
BisI GCNGC 3 cut(s) 86, 185, 372
BlpI GCTNAGC 1 cut(s) 265
BlsI GCNGC 3 cut(s) 87, 186, 373
Bme1390I CCNGG 4 cut(s) 7, 96, 114, 155
BmeRI GACNNNNNGTC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 231
BmrFI CCNGG 4 cut(s) 7, 96, 114, 155
Bpu1102I GCTNAGC 1 cut(s) 265
BpuMI CCSGG 3 cut(s) 7, 96, 114
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 6, 113, 125
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 61, 95
Bse118I RCCGGY 1 cut(s) 252
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 3 cut(s) 6, 113, 125
BseLI CCNNNNNNNGG 3 cut(s) 12, 61, 95
BseMII CTCAG 3 cut(s) 186, 249, 279
BseXI GCAGC 2 cut(s) 196, 358
BseYI CCCAGC 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 1 cut(s) 232
BshTI ACCGGT 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 5 cut(s) 6, 96, 113, 229, 253
BslI CCNNNNNNNGG 3 cut(s) 12, 61, 95
BsnI GGCC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 121, 266
Bsp143I GATC 1 cut(s) 45
Bsp1720I GCTNAGC 1 cut(s) 265
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 3 cut(s) 185, 250, 278
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 6, 113, 125
BssMI GATC 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 172, 258, 265
BstDSI CCRYGG 1 cut(s) 125
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 82, 116, 210
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 4 cut(s) 5, 94, 112, 153
BstV1I GCAGC 2 cut(s) 196, 358
BsuRI GGCC 1 cut(s) 232
BtgI CCRYGG 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 192
CaiI CAGNNNCTG 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 1 cut(s) 22
CsiI ACCWGGT 1 cut(s) 153
CspAI ACCGGT 1 cut(s) 252
CspCI CAANNNNNGTGG 4 cut(s) 114, 149, 277, 312
CviJI RGCY 9 cut(s) 43, 85, 104, 119, 149, 204, 232, 264, 269
CviKI_1 RGCY 9 cut(s) 43, 85, 104, 119, 149, 204, 232, 264, 269
DdeI CTNAG 3 cut(s) 172, 258, 265
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DrdI GACNNNNNNGTC 1 cut(s) 332
DriI GACNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 332
Eam1105I GACNNNNNGTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 264
Eco24I GRGCYC 2 cut(s) 121, 266
Eco53kI GAGCTC 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 153
EcoT38I GRGCYC 2 cut(s) 121, 266
FaiI YATR 4 cut(s) 318, 320, 324, 379
FauNDI CATATG 1 cut(s) 318
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 86, 185, 372
FriOI GRGCYC 2 cut(s) 121, 266
Fsp4HI GCNGC 3 cut(s) 86, 185, 372
GluI GCNGC 3 cut(s) 86, 185, 372
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 232
HapII CCGG 5 cut(s) 6, 96, 113, 229, 253
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 33
HinfI GANTC 4 cut(s) 65, 189, 208, 340
HpaII CCGG 5 cut(s) 6, 96, 113, 229, 253
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 175, 259
Hpy188III TCNNGA 3 cut(s) 49, 337, 362
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 358
HpyCH4V TGCA 2 cut(s) 110, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 116, 210
HpyF3I CTNAG 3 cut(s) 172, 258, 265
Hsp92I GRCGYC 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 170, 231, 288
LpnPI CCDG 9 cut(s) 19, 109, 126, 140, 159, 167, 190, 242, 266
Lsp1109I GCAGC 2 cut(s) 196, 358
MabI ACCWGGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 362
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 121, 266
MlyI GAGTC 3 cut(s) 74, 183, 202
MnlI CCTC 5 cut(s) 54, 152, 248, 284, 323
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 5 cut(s) 6, 96, 113, 229, 253
MspR9I CCNGG 4 cut(s) 7, 96, 114, 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 82, 116, 210
NciI CCSGG 3 cut(s) 7, 96, 114
NdeI CATATG 1 cut(s) 318
NdeII GATC 1 cut(s) 45
NmeAIII GCCGAG 2 cut(s) 19, 180
NmuCI GTSAC 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfeI GAWTC 1 cut(s) 340
PinAI ACCGGT 1 cut(s) 252
PkrI GCNGC 3 cut(s) 87, 186, 373
PleI GAGTC 3 cut(s) 73, 183, 202
PpsI GAGTC 3 cut(s) 73, 183, 202
Psp124BI GAGCTC 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 1 cut(s) 153
PspPI GGNCC 1 cut(s) 231
PspXI VCTCGAGB 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 266
SatI GCNGC 3 cut(s) 86, 185, 372
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 3 cut(s) 74, 183, 202
ScrFI CCNGG 4 cut(s) 7, 96, 114, 155
SduI GDGCHC 2 cut(s) 121, 266
SetI ASST 5 cut(s) 144, 159, 240, 266, 276
SexAI ACCWGGT 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 1 cut(s) 86
SstI GAGCTC 1 cut(s) 266
StyD4I CCNGG 4 cut(s) 5, 94, 112, 153
TaqI TCGA 3 cut(s) 72, 121, 180
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 2 cut(s) 112, 199
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 2 cut(s) 184, 371
Tsp45I GTSAC 1 cut(s) 362
TspRI CASTG 2 cut(s) 112, 199
XhoI CTCGAG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.