MD00G1012500.v1.1

Flowering-promoting factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0017275
Physical Location & Seq
Reverse (-)
1548358 .. 1548735
378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1012500.v1.1.491

Sequence Viewer

Length: 378 bp
ATGTCCGGAGTGTGGATATTTGACGAACACGGCGTCGTTCGGCTGATCACGAACCCAACTCGGGAGTCGTTTGAGCAAAAAGAGCCGCAGAATCCGGGCACAGCCACCGCACCTGGTGCTCGGCCCAGAGTCTTGGTCTACCTCCCAACCAACCAGGTCATCCGCTCCTACCCCGAACTCGAGCAGCGACTCACTGAACTGGGCTGGACTCGCTATCCCAACTCGTGTCGGCCTGACCTCCTCCAGTTCCACCGCTCCGAGAACTCAGTCCATCTCATCTCGCTCCCCAAGAATTTTGCCAACCTCAAGTCCTTCCAGATGTACGACATCGTCGTCAAGAATCGCTCCTTCTTTGAAGTTCGTGACGCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.43

Weight (kDa)

8.89

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017275)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36220
malus_domestica MD00G1012500.v1.1 MD03G1092000.v1.1
prunus_persica Prupe.6G075900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065031
rosa_laevigata RLG00000035748
rosa_multiflora Rmu_sc0003352.1_g000027
rosa_roxburghii Rroxscaffold_1G00016290
rosa_rugosa Rorug05G0367100
rosa_samantha Rh5BG440900 Rh5CG463500 Rh5DG453700
rosa_wichuraiana Rw5G040000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccBSI CCGCTC 2 cut(s) 165, 255
AccI GTMKAC 1 cut(s) 138
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 4 cut(s) 86, 108, 163, 253
AcsI RAATTY 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 12, 61
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 2 cut(s) 112, 153
Alw21I GWGCWC 1 cut(s) 121
Ama87I CYCGRG 2 cut(s) 60, 179
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 2 cut(s) 122, 230
ApeKI GCWGC 3 cut(s) 184, 368, 371
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AspS9I GGNCC 1 cut(s) 123
AsuC2I CCSGG 1 cut(s) 96
AvaI CYCGRG 2 cut(s) 60, 179
BaeGI GKGCMC 1 cut(s) 101
BauI CACGAG 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 3 cut(s) 196, 355, 358
BccI CCATC 1 cut(s) 279
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 114, 155
BclI TGATCA 1 cut(s) 45
BcnI CCSGG 1 cut(s) 96
BisI GCNGC 4 cut(s) 86, 185, 369, 372
BlsI GCNGC 4 cut(s) 87, 186, 370, 373
Bme1390I CCNGG 3 cut(s) 96, 114, 155
BmeT110I CYCGRG 2 cut(s) 60, 179
BmgT120I GGNCC 1 cut(s) 123
BmrFI CCNGG 3 cut(s) 96, 114, 155
BmrI ACTGGG 1 cut(s) 209
BmuI ACTGGG 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 61
Bse1I ACTGG 2 cut(s) 204, 244
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 2 cut(s) 114, 155
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 12, 61
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 2 cut(s) 204, 244
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 3 cut(s) 196, 355, 358
BshFI GGCC 2 cut(s) 124, 232
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 2 cut(s) 60, 179
BsiSI CCGG 2 cut(s) 6, 95
BslI CCNNNNNNNGG 2 cut(s) 12, 61
BsnI GGCC 2 cut(s) 124, 232
BsoBI CYCGRG 2 cut(s) 60, 179
Bsp1286I GDGCHC 2 cut(s) 101, 121
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 4 cut(s) 86, 108, 163, 253
BspANI GGCC 2 cut(s) 124, 232
BspCNI CTCAG 1 cut(s) 278
BspEI TCCGGA 1 cut(s) 5
BsrBI CCGCTC 2 cut(s) 165, 255
BsrI ACTGG 2 cut(s) 204, 244
BssMI GATC 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 223
Bst2UI CCWGG 2 cut(s) 114, 155
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 82, 116, 210
BstNI CCWGG 2 cut(s) 114, 155
BstSCI CCNGG 3 cut(s) 94, 112, 153
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 196, 355, 358
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 2 cut(s) 124, 232
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 123
CseI GACGC 1 cut(s) 22
CsiI ACCWGGT 2 cut(s) 112, 153
Csp6I GTAC 1 cut(s) 322
CviJI RGCY 6 cut(s) 43, 85, 104, 124, 204, 232
CviKI_1 RGCY 6 cut(s) 43, 85, 104, 124, 204, 232
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 265
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DraIII CACNNNGTG 1 cut(s) 116
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eco88I CYCGRG 2 cut(s) 60, 179
EcoRII CCWGG 2 cut(s) 112, 153
FaiI YATR 1 cut(s) 376
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 86, 185, 369, 372
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 4 cut(s) 86, 185, 369, 372
GluI GCNGC 4 cut(s) 86, 185, 369, 372
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 124, 232
HapII CCGG 2 cut(s) 6, 95
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 33
HinfI GANTC 6 cut(s) 65, 91, 129, 189, 208, 340
HpaII CCGG 2 cut(s) 6, 95
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 6 cut(s) 6, 49, 62, 316, 337, 362
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 2 cut(s) 38, 335
HpyAV CCTTC 2 cut(s) 322, 358
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 116, 210
HpyF3I CTNAG 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 33
Kpn2I TCCGGA 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 4 cut(s) 170, 260, 288, 350
Lsp1109I GCAGC 3 cut(s) 196, 355, 358
MabI ACCWGGT 2 cut(s) 112, 153
MaeIII GTNAC 1 cut(s) 362
MalI GATC 1 cut(s) 47
MbiI CCGCTC 2 cut(s) 165, 255
MboI GATC 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 101, 121
MluCI AATT 1 cut(s) 292
MlyI GAGTC 4 cut(s) 74, 138, 183, 202
MnlI CCTC 4 cut(s) 152, 248, 251, 314
MroI TCCGGA 1 cut(s) 5
MspI CCGG 2 cut(s) 6, 95
MspR9I CCNGG 3 cut(s) 96, 114, 155
MvaI CCWGG 2 cut(s) 114, 155
MwoI GCNNNNNNNGC 3 cut(s) 82, 116, 210
NciI CCSGG 1 cut(s) 96
NdeII GATC 1 cut(s) 45
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 330
PfeI GAWTC 2 cut(s) 91, 340
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 4 cut(s) 87, 186, 370, 373
PleI GAGTC 4 cut(s) 73, 137, 183, 202
PpsI GAGTC 4 cut(s) 73, 137, 183, 202
Psp6I CCWGG 2 cut(s) 112, 153
PspGI CCWGG 2 cut(s) 112, 153
PspPI GGNCC 1 cut(s) 123
PspXI VCTCGAGB 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SatI GCNGC 4 cut(s) 86, 185, 369, 372
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 4 cut(s) 74, 138, 183, 202
ScrFI CCNGG 3 cut(s) 96, 114, 155
SduI GDGCHC 2 cut(s) 101, 121
SetI ASST 5 cut(s) 115, 144, 159, 240, 306
SexAI ACCWGGT 2 cut(s) 112, 153
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 179, 305
SmoI CTYRAG 2 cut(s) 179, 305
Sse9I AATT 1 cut(s) 292
SsiI CCGC 4 cut(s) 86, 108, 163, 253
StyD4I CCNGG 3 cut(s) 94, 112, 153
TaqI TCGA 1 cut(s) 180
TasI AATT 1 cut(s) 292
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 2 cut(s) 91, 340
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 3 cut(s) 184, 368, 371
Tsp45I GTSAC 1 cut(s) 362
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 329
XapI RAATTY 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.