Rroxscaffold_1G00016290

Flowering-promoting factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017275
Physical Location & Seq
Forward (+)
20301657 .. 20302560
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016290.1

Sequence Viewer

Length: 414 bp
ATGTCCGGCGTGTGGATATTCGACAAAAACGGCGTCGCTCGACTGGTCACAAACCCGACCAGGGAATCCTTCGAGCAAAAAGAACCGCCCTATCCGGGTACAGCGACCGCACCCGGAGCTCGACCCCGACTATTGATATACCTTCCAGCCAACCAGGTCATCCGGTCCTATGCTGAACTCGAGCAGCGACTCACTGAACTCGGCTGGACTCGGTACCAGCCTAACTCATTCTGCCAACCGCACCTAGTGCAATTCCACCGCTCCGAGGACTCGGCTCACCTCATCTCGCTCCCTACCAAATTTGATCACTTCAAGTCGTTTCATATGTACGACATCGTCGTCAAGAATAGATCCTTCTTTGAAGATGATGAGAGTAGAGAAGTCAAACAAAATGGTTTCACCCGACCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.95

Weight (kDa)

7.92

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017275)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36220
malus_domestica MD00G1012500.v1.1 MD03G1092000.v1.1
prunus_persica Prupe.6G075900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065031
rosa_laevigata RLG00000035748
rosa_multiflora Rmu_sc0003352.1_g000027
rosa_roxburghii Rroxscaffold_1G00016290
rosa_rugosa Rorug05G0367100
rosa_samantha Rh5BG440900 Rh5CG463500 Rh5DG453700
rosa_wichuraiana Rw5G040000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 261
AciI CCGC 4 cut(s) 86, 108, 239, 259
AclWI GGATC 1 cut(s) 345
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 3 cut(s) 100, 215, 329
AfiI CCNNNNNNNGG 4 cut(s) 12, 61, 95, 265
AgsI TTSAA 2 cut(s) 313, 362
AjnI CCWGG 2 cut(s) 59, 153
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 121
AlwI GGATC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 299
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
Asp718I GGTACC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 2 cut(s) 96, 114
AsuHPI GGTGA 2 cut(s) 269, 391
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 61, 155
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 2 cut(s) 96, 114
BfaI CTAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 4 cut(s) 61, 96, 114, 155
Bme18I GGWCC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 4 cut(s) 61, 96, 114, 155
BpuMI CCSGG 2 cut(s) 96, 114
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 60, 264
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 61, 95, 265
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 2 cut(s) 61, 155
BseDI CCNNGG 2 cut(s) 60, 264
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 4 cut(s) 12, 61, 95, 265
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 196
Bsh1285I CGRYCG 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 4 cut(s) 6, 95, 114, 163
BslI CCNNNNNNNGG 4 cut(s) 12, 61, 95, 265
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 304, 350
BspACI CCGC 4 cut(s) 86, 108, 239, 259
BspLI GGNNCC 1 cut(s) 215
BspPI GGATC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 213
BsrBI CCGCTC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 60, 264
BssMI GATC 2 cut(s) 304, 350
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 61, 155
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 247
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 2 cut(s) 307, 353
BstMBI GATC 2 cut(s) 304, 350
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 116, 247
BstNI CCWGG 2 cut(s) 61, 155
BstSCI CCNGG 4 cut(s) 59, 94, 112, 153
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 165
CseI GACGC 1 cut(s) 22
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 3 cut(s) 99, 214, 328
CviJI RGCY 5 cut(s) 119, 149, 204, 220, 275
CviKI_1 RGCY 5 cut(s) 119, 149, 204, 220, 275
CviQI GTAC 3 cut(s) 99, 214, 328
DpnI GATC 2 cut(s) 306, 352
DpnII GATC 2 cut(s) 304, 350
DraIII CACNNNGTG 1 cut(s) 247
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 59, 153
EcoT38I GRGCYC 1 cut(s) 121
FaiI YATR 4 cut(s) 139, 171, 324, 326
FauNDI CATATG 1 cut(s) 324
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 245
GluI GCNGC 1 cut(s) 185
HapII CCGG 4 cut(s) 6, 95, 114, 163
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 33
HinfI GANTC 4 cut(s) 65, 189, 208, 269
HpaII CCGG 4 cut(s) 6, 95, 114, 163
HphI GGTGA 2 cut(s) 269, 391
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 343
Hpy99I CGWCG 2 cut(s) 38, 341
HpyAV CCTTC 3 cut(s) 79, 152, 364
HpyCH4V TGCA 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 247
Hsp92I GRCGYC 1 cut(s) 33
KpnI GGTACC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 304, 350
LmnI GCTCC 3 cut(s) 116, 266, 294
Lsp1109I GCAGC 1 cut(s) 196
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 306, 352
MbiI CCGCTC 1 cut(s) 261
MboI GATC 2 cut(s) 304, 350
MboII GAAGA 1 cut(s) 374
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 2 cut(s) 251, 299
MlyI GAGTC 3 cut(s) 183, 202, 263
MnlI CCTC 2 cut(s) 259, 290
MseI TTAA 1 cut(s) 412
MspI CCGG 4 cut(s) 6, 95, 114, 163
MspR9I CCNGG 4 cut(s) 61, 96, 114, 155
MvaI CCWGG 2 cut(s) 61, 155
MwoI GCNNNNNNNGC 2 cut(s) 116, 247
NciI CCSGG 2 cut(s) 96, 114
NdeI CATATG 1 cut(s) 324
NdeII GATC 2 cut(s) 304, 350
NlaIV GGNNCC 1 cut(s) 215
NmeAIII GCCGAG 2 cut(s) 180, 251
NmuCI GTSAC 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 3 cut(s) 183, 202, 263
PpsI GAGTC 3 cut(s) 183, 202, 263
Psp124BI GAGCTC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 59, 153
PspGI CCWGG 2 cut(s) 59, 153
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 165
PspXI VCTCGAGB 1 cut(s) 179
PsuI RGATCY 1 cut(s) 350
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 3 cut(s) 100, 215, 329
RsaNI GTAC 3 cut(s) 99, 214, 328
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 412
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 304, 350
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 3 cut(s) 183, 202, 263
ScrFI CCNGG 4 cut(s) 61, 96, 114, 155
SduI GDGCHC 1 cut(s) 121
SetI ASST 6 cut(s) 121, 144, 159, 246, 282, 412
SexAI ACCWGGT 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 179
SinI GGWCC 1 cut(s) 165
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 251, 299
SsiI CCGC 4 cut(s) 86, 108, 239, 259
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 4 cut(s) 59, 94, 112, 153
TaqI TCGA 5 cut(s) 21, 40, 72, 121, 180
TasI AATT 2 cut(s) 251, 299
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 179
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.