Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0019216

Physical Location & Seq

Genomic Coordinates Reverse (-)

32257469 .. 32258289

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCGAAAAACTGCTGCCAAGTCCAAAAATGTGTCATCTGGCAACCCATGGTATGGCCCGGACCGTGTTAAGTACTTGGGCCCATTCTCCAGTGAGGCCCCATCGTACCTCATAGGGAGTTTCCCGGGGACTACGGTTAGGACACTGCTGGGCTATCAGCCGATCCCGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTCATCCATTCCATATGGGCCATGCTTGGGGCCTTGGGCTGTGTTTTCCCTGAACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

86

Amino Acids

9.22

Weight (kDa)

10.17

Isoelectric Point (pI)

21.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019216)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37620
rosa_chinensis	RchiOBHm_Chr5g0067741
rosa_multiflora	Rmu_sc0000230.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013520 Rroxscaffold_2G00104610
rosa_samantha	Rh3CG308600 Rh5AG445100 Rh5DG476400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	53
AclWI	GGATC	1 cut(s)	157
AfaI	GTAC	2 cut(s)	74, 107
AfiI	CCNNNNNNNGG	2 cut(s)	53, 224
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	2 cut(s)	124, 166
AoxI	GGCC	5 cut(s)	55, 79, 96, 215, 227
ApaI	GGGCCC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	14
AspS9I	GGNCC	7 cut(s)	56, 61, 79, 80, 97, 215, 227
AsuC2I	CCSGG	3 cut(s)	59, 125, 126
AvaI	CYCGRG	2 cut(s)	124, 166
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	83
BccI	CCATC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BcnI	CCSGG	3 cut(s)	59, 125, 126
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	256
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	3 cut(s)	59, 125, 126
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	2 cut(s)	124, 166
BmgT120I	GGNCC	7 cut(s)	56, 61, 79, 80, 97, 215, 227
BmiI	GGNNCC	3 cut(s)	81, 99, 228
BmrFI	CCNGG	3 cut(s)	59, 125, 126
BpmI	CTGGAG	1 cut(s)	73
BpuMI	CCSGG	3 cut(s)	59, 125, 126
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	4 cut(s)	47, 124, 125, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 224
Bse1I	ACTGG	1 cut(s)	90
BseDI	CCNNGG	4 cut(s)	47, 124, 125, 230
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	53, 224
BseNI	ACTGG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	148
BshFI	GGCC	5 cut(s)	57, 81, 98, 217, 229
BsiHKCI	CYCGRG	2 cut(s)	124, 166
BsiSI	CCGG	2 cut(s)	59, 125
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	53, 224
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	5 cut(s)	57, 81, 98, 217, 229
Bso31I	GGTCTC	1 cut(s)	163
BsoBI	CYCGRG	2 cut(s)	124, 166
Bsp120I	GGGCCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	162
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	5 cut(s)	57, 81, 98, 217, 229
BspLI	GGNNCC	3 cut(s)	81, 99, 228
BspPI	GGATC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	4 cut(s)	47, 124, 125, 230
BssMI	GATC	1 cut(s)	162
BssT1I	CCWWGG	2 cut(s)	47, 230
Bst4CI	ACNGT	3 cut(s)	65, 136, 187
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	200
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	162
BstSCI	CCNGG	3 cut(s)	57, 123, 124
BstSLI	GKGCMC	1 cut(s)	83
BsuRI	GGCC	5 cut(s)	57, 81, 98, 217, 229
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	200
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	97, 143
Cfr13I	GGNCC	7 cut(s)	56, 61, 79, 80, 97, 215, 227
Cfr9I	CCCGGG	1 cut(s)	124
CpoI	CGGWCCG	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	73, 106
CspI	CGGWCCG	1 cut(s)	61
CviAII	CATG	2 cut(s)	48, 219
CviJI	RGCY	9 cut(s)	57, 81, 98, 153, 160, 192, 217, 229, 236
CviKI_1	RGCY	9 cut(s)	57, 81, 98, 153, 160, 192, 217, 229, 236
CviQI	GTAC	2 cut(s)	73, 106
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	47, 230
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	2 cut(s)	124, 166
EcoO109I	RGGNCCY	2 cut(s)	97, 227
EcoT14I	CCWWGG	2 cut(s)	47, 230
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	2 cut(s)	47, 230
FaeI	CATG	2 cut(s)	51, 222
FaiI	YATR	6 cut(s)	49, 54, 113, 211, 213, 220
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	47, 218
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	256
GluI	GCNGC	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	5 cut(s)	57, 81, 98, 217, 229
HapII	CCGG	2 cut(s)	59, 125
Hin1II	CATG	2 cut(s)	51, 222
HpaII	CCGG	2 cut(s)	59, 125
Hpy188III	TCNNGA	1 cut(s)	166
HpyCH4III	ACNGT	3 cut(s)	65, 136, 187
Hsp92II	CATG	2 cut(s)	51, 222
Kzo9I	GATC	1 cut(s)	162
LpnPI	CCDG	5 cut(s)	24, 72, 103, 134, 138
MaeI	CTAG	1 cut(s)	256
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	83
MnlI	CCTC	2 cut(s)	88, 119
MseI	TTAA	1 cut(s)	69
MspI	CCGG	2 cut(s)	59, 125
MspR9I	CCNGG	3 cut(s)	59, 125, 126
NciI	CCSGG	3 cut(s)	59, 125, 126
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	2 cut(s)	51, 222
NlaIV	GGNNCC	3 cut(s)	81, 99, 228
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	81, 99, 228
PspOMI	GGGCCC	1 cut(s)	79
PspPI	GGNCC	7 cut(s)	56, 61, 79, 80, 97, 215, 227
RsaI	GTAC	2 cut(s)	74, 107
RsaNI	GTAC	2 cut(s)	73, 106
Rsr2I	CGGWCCG	1 cut(s)	61
RsrII	CGGWCCG	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	7 cut(s)	56, 61, 79, 80, 97, 215, 227
ScaI	AGTACT	1 cut(s)	74
ScrFI	CCNGG	3 cut(s)	59, 125, 126
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	3 cut(s)	111, 175, 194
SinI	GGWCC	1 cut(s)	61
SmaI	CCCGGG	1 cut(s)	126
SspMI	CTAG	1 cut(s)	256
StyD4I	CCNGG	3 cut(s)	57, 123, 124
StyI	CCWWGG	2 cut(s)	47, 230
TaaI	ACNGT	3 cut(s)	65, 136, 187
TatI	WGTACW	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	97, 150
TseI	GCWGC	1 cut(s)	14
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	2 cut(s)	97, 150
Van91I	CCANNNNNTGG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	61
XmaI	CCCGGG	1 cut(s)	124
XspI	CTAG	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.