Rh5AG445100

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019216
Physical Location & Seq
Reverse (-)
76504706 .. 76504907
202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG445100.1

Sequence Viewer

Length: 202 bp
ATGGCGCTCTCCTCTCCTTCTCTAGCTGGCCAAGCTGTGAAGCTCAGTCCCTCTACATCTAATCTCCTCAGTGAGGGCCGAGTCACTATGCGCAAAACTGCAGCCAAGTCCAAAACTGTTTTATCAGGTAGCCCTTGGTACGGTGCATACCGTGTCAAGTACTTGGGCCCATTCTCCGGTGAGGCTCCATCATACCTCATTG

Protein Analysis

67

Amino Acids

7.07

Weight (kDa)

10.09

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019216)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37620
rosa_chinensis RchiOBHm_Chr5g0067741
rosa_multiflora Rmu_sc0000230.1_g000003
rosa_roxburghii Rroxscaffold_1G00013520 Rroxscaffold_2G00104610
rosa_samantha Rh3CG308600 Rh5AG445100 Rh5DG476400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 28
AfaI GTAC 2 cut(s) 140, 161
AfiI CCNNNNNNNGG 3 cut(s) 73, 140, 176
AluBI AGCT 3 cut(s) 26, 35, 43
AluI AGCT 3 cut(s) 26, 35, 43
AoxI GGCC 3 cut(s) 28, 76, 166
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 101
AspLEI GCGC 2 cut(s) 7, 93
AspS9I GGNCC 3 cut(s) 76, 166, 167
AsuHPI GGTGA 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 30
BanII GRGCYC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 196
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmcAI AGTACT 1 cut(s) 161
BmgT120I GGNCC 3 cut(s) 76, 166, 167
BmiI GGNNCC 2 cut(s) 168, 186
BsaJI CCNNGG 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 140, 176
BseDI CCNNGG 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 73, 140, 176
BseMII CTCAG 2 cut(s) 58, 82
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 1 cut(s) 113
BshFI GGCC 3 cut(s) 30, 78, 168
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 3 cut(s) 73, 140, 176
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 3 cut(s) 30, 78, 168
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 170
BspANI GGCC 3 cut(s) 30, 78, 168
BspCNI CTCAG 2 cut(s) 57, 81
BspLI GGNNCC 2 cut(s) 168, 186
BspMAI CTGCAG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 3 cut(s) 118, 143, 152
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 44, 68
BstENI CCTNNNNNAGG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 93
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 113
BsuRI GGCC 3 cut(s) 30, 78, 168
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 2 cut(s) 7, 93
Cfr13I GGNCC 3 cut(s) 76, 166, 167
Csp6I GTAC 2 cut(s) 139, 160
CviJI RGCY 9 cut(s) 26, 30, 35, 43, 78, 104, 132, 168, 185
CviKI_1 RGCY 9 cut(s) 26, 30, 35, 43, 78, 104, 132, 168, 185
CviQI GTAC 2 cut(s) 139, 160
DdeI CTNAG 2 cut(s) 44, 68
EaeI YGGCCR 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 134
FaiI YATR 3 cut(s) 89, 148, 193
FaqI GGGAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 23
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 2 cut(s) 6, 92
GluI GCNGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 30, 78, 168
HapII CCGG 1 cut(s) 177
HhaI GCGC 2 cut(s) 7, 93
Hin6I GCGC 2 cut(s) 5, 91
HinP1I GCGC 2 cut(s) 5, 91
HinfI GANTC 1 cut(s) 81
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 3 cut(s) 118, 143, 152
HpyCH4V TGCA 2 cut(s) 101, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 44, 68
HspAI GCGC 2 cut(s) 5, 91
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 12, 111, 190
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 30
MluNI TGGCCA 1 cut(s) 30
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 5 cut(s) 22, 61, 67, 77, 175
Mox20I TGGCCA 1 cut(s) 30
MscI TGGCCA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 30
MspI CCGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 32
NlaIV GGNNCC 2 cut(s) 168, 186
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 82
NsbI TGCGCA 1 cut(s) 92
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 168, 186
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 3 cut(s) 76, 166, 167
PstI CTGCAG 1 cut(s) 103
RsaI GTAC 2 cut(s) 140, 161
RsaNI GTAC 2 cut(s) 139, 160
SatI GCNGC 1 cut(s) 102
Sau96I GGNCC 3 cut(s) 76, 166, 167
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 1 cut(s) 90
SduI GDGCHC 1 cut(s) 170
SetI ASST 5 cut(s) 28, 37, 45, 130, 198
SfcI CTRYAG 1 cut(s) 99
SspMI CTAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 3 cut(s) 118, 143, 152
TatI WGTACW 1 cut(s) 159
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 82
TspRI CASTG 1 cut(s) 76
XagI CCTNNNNNAGG 1 cut(s) 71
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.