The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g37620 |
| rosa_chinensis | RchiOBHm_Chr5g0067741 |
| rosa_multiflora | Rmu_sc0000230.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00013520 Rroxscaffold_2G00104610 |
| rosa_samantha | Rh3CG308600 Rh5AG445100 Rh5DG476400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 2 cut(s) | 152, 173 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 32, 152, 188 |
| AgsI | TTSAA | 1 cut(s) | 54 |
| AjnI | CCWGG | 1 cut(s) | 146 |
| AluBI | AGCT | 2 cut(s) | 77, 128 |
| AluI | AGCT | 2 cut(s) | 77, 128 |
| Alw26I | GTCTC | 1 cut(s) | 56 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 147 |
| AoxI | GGCC | 1 cut(s) | 154 |
| ApeKI | GCWGC | 2 cut(s) | 128, 141 |
| AspS9I | GGNCC | 2 cut(s) | 155, 179 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| AvaII | GGWCC | 1 cut(s) | 179 |
| BbsI | GAAGAC | 1 cut(s) | 116 |
| BbvI | GCAGC | 2 cut(s) | 115, 153 |
| BccI | CCATC | 1 cut(s) | 208 |
| BceAI | ACGGC | 2 cut(s) | 27, 169 |
| BciT130I | CCWGG | 1 cut(s) | 148 |
| BcoDI | GTCTC | 1 cut(s) | 56 |
| BfaI | CTAG | 1 cut(s) | 217 |
| BisI | GCNGC | 2 cut(s) | 129, 142 |
| BlsI | GCNGC | 2 cut(s) | 130, 143 |
| Bme1390I | CCNGG | 1 cut(s) | 148 |
| Bme18I | GGWCC | 1 cut(s) | 179 |
| BmgT120I | GGNCC | 2 cut(s) | 155, 179 |
| BmiI | GGNNCC | 1 cut(s) | 198 |
| BmrFI | CCNGG | 1 cut(s) | 148 |
| BmsI | GCATC | 1 cut(s) | 14 |
| BpiI | GAAGAC | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 3 cut(s) | 9, 146, 175 |
| BsaWI | WCCGGW | 1 cut(s) | 188 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 32, 152, 188 |
| Bse118I | RCCGGY | 1 cut(s) | 212 |
| Bse3DI | GCAATG | 1 cut(s) | 94 |
| BseBI | CCWGG | 1 cut(s) | 148 |
| BseDI | CCNNGG | 3 cut(s) | 9, 146, 175 |
| BseGI | GGATG | 2 cut(s) | 5, 200 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 32, 152, 188 |
| BseMI | GCAATG | 1 cut(s) | 94 |
| BseXI | GCAGC | 2 cut(s) | 115, 153 |
| BshFI | GGCC | 1 cut(s) | 156 |
| BsiSI | CCGG | 2 cut(s) | 189, 213 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 32, 152, 188 |
| BsmAI | GTCTC | 1 cut(s) | 56 |
| BsmBI | CGTCTC | 1 cut(s) | 56 |
| BsnI | GGCC | 1 cut(s) | 156 |
| BspANI | GGCC | 1 cut(s) | 156 |
| BspLI | GGNNCC | 1 cut(s) | 198 |
| BsrDI | GCAATG | 1 cut(s) | 94 |
| BsrFI | RCCGGY | 1 cut(s) | 212 |
| BssAI | RCCGGY | 1 cut(s) | 212 |
| BssECI | CCNNGG | 3 cut(s) | 9, 146, 175 |
| BssT1I | CCWWGG | 1 cut(s) | 175 |
| Bst2UI | CCWGG | 1 cut(s) | 148 |
| Bst4CI | ACNGT | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 1 cut(s) | 126 |
| BstDSI | CCRYGG | 1 cut(s) | 9 |
| BstF5I | GGATG | 2 cut(s) | 5, 200 |
| BstMAI | GTCTC | 1 cut(s) | 56 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNI | CCWGG | 1 cut(s) | 148 |
| BstSCI | CCNGG | 1 cut(s) | 146 |
| BstV1I | GCAGC | 2 cut(s) | 115, 153 |
| BstV2I | GAAGAC | 1 cut(s) | 116 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 89 |
| BsuRI | GGCC | 1 cut(s) | 156 |
| BtgI | CCRYGG | 1 cut(s) | 9 |
| BtsCI | GGATG | 2 cut(s) | 5, 200 |
| Cac8I | GCNNGC | 1 cut(s) | 126 |
| CaiI | CAGNNNCTG | 1 cut(s) | 147 |
| Cfr10I | RCCGGY | 1 cut(s) | 212 |
| Cfr13I | GGNCC | 2 cut(s) | 155, 179 |
| Csp6I | GTAC | 2 cut(s) | 151, 172 |
| CviQI | GTAC | 2 cut(s) | 151, 172 |
| Eco130I | CCWWGG | 1 cut(s) | 175 |
| Eco47I | GGWCC | 1 cut(s) | 179 |
| EcoRII | CCWGG | 1 cut(s) | 146 |
| EcoT14I | CCWWGG | 1 cut(s) | 175 |
| ErhI | CCWWGG | 1 cut(s) | 175 |
| Esp3I | CGTCTC | 1 cut(s) | 56 |
| FaiI | YATR | 2 cut(s) | 32, 104 |
| Fnu4HI | GCNGC | 2 cut(s) | 129, 142 |
| FokI | GGATG | 1 cut(s) | 187 |
| Fsp4HI | GCNGC | 2 cut(s) | 129, 142 |
| FspBI | CTAG | 1 cut(s) | 217 |
| GluI | GCNGC | 2 cut(s) | 129, 142 |
| HaeIII | GGCC | 1 cut(s) | 156 |
| HapII | CCGG | 2 cut(s) | 189, 213 |
| HpaII | CCGG | 2 cut(s) | 189, 213 |
| HphI | GGTGA | 1 cut(s) | 203 |
| HpyAV | CCTTC | 1 cut(s) | 60 |
| HpyCH4III | ACNGT | 1 cut(s) | 164 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| LmnI | GCTCC | 1 cut(s) | 202 |
| LpnPI | CCDG | 6 cut(s) | 123, 133, 138, 160, 171, 202 |
| Lsp1109I | GCAGC | 2 cut(s) | 115, 153 |
| LweI | GCATC | 1 cut(s) | 14 |
| MaeI | CTAG | 1 cut(s) | 217 |
| MboII | GAAGA | 1 cut(s) | 121 |
| MnlI | CCTC | 2 cut(s) | 99, 187 |
| MspA1I | CMGCKG | 1 cut(s) | 128 |
| MspI | CCGG | 2 cut(s) | 189, 213 |
| MspR9I | CCNGG | 1 cut(s) | 148 |
| MvaI | CCWGG | 1 cut(s) | 148 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NlaIV | GGNNCC | 1 cut(s) | 198 |
| PflFI | GACNNNGTC | 1 cut(s) | 164 |
| PkrI | GCNGC | 2 cut(s) | 130, 143 |
| Psp6I | CCWGG | 1 cut(s) | 146 |
| PspGI | CCWGG | 1 cut(s) | 146 |
| PspN4I | GGNNCC | 1 cut(s) | 198 |
| PspPI | GGNCC | 2 cut(s) | 155, 179 |
| PstNI | CAGNNNCTG | 1 cut(s) | 147 |
| PsyI | GACNNNGTC | 1 cut(s) | 164 |
| PvuII | CAGCTG | 1 cut(s) | 128 |
| RsaI | GTAC | 2 cut(s) | 152, 173 |
| RsaNI | GTAC | 2 cut(s) | 151, 172 |
| SatI | GCNGC | 2 cut(s) | 129, 142 |
| Sau96I | GGNCC | 2 cut(s) | 155, 179 |
| ScrFI | CCNGG | 1 cut(s) | 148 |
| SetI | ASST | 4 cut(s) | 79, 130, 177, 210 |
| SfaNI | GCATC | 1 cut(s) | 14 |
| SinI | GGWCC | 1 cut(s) | 179 |
| SspMI | CTAG | 1 cut(s) | 217 |
| StyD4I | CCNGG | 1 cut(s) | 146 |
| StyI | CCWWGG | 1 cut(s) | 175 |
| TaaI | ACNGT | 1 cut(s) | 164 |
| TseI | GCWGC | 2 cut(s) | 128, 141 |
| TspDTI | ATGAA | 2 cut(s) | 19, 123 |
| Tth111I | GACNNNGTC | 1 cut(s) | 164 |
| VpaK11BI | GGWCC | 1 cut(s) | 179 |
| XspI | CTAG | 1 cut(s) | 217 |