Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000230.1

Orthogroup ID

OG0019216

Physical Location & Seq

Genomic Coordinates Reverse (-)

15414 .. 16294

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000230.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggagactagtggagtagtggagcatatgaagccaactggaaatgaagcaagcgagtcctctcatattgcacagagtactaagttcaaattctattggctgaaaatgagcacttgtctattacacaaaaacactcgctacaatttcagcatctctcgaatggcttcttcagcaatggctctctcctccccttccctagctggccaagctgtgaagctcagttcctccatatctaatttcctcggtgagggccgaattaccatgcgcaaaaccgcagccaagtccaaaatcgtatcatctggcagcccatggtacggtgcagaccgtgttaagtatttgggcccattcttcggtgaggccccatcttccctcatcggagagtttcctgggattacgcccgctatggagtcaacttcggctaggctgtttggttcagggccggagcctagatatttagcgagggtcatcttgatgggcgcggttgaaggctatagaattgcccgtgggcctcttggtaaggtggtagacccattgtaccctggagggagctttgaccgattaggacttgctgaagatccagaggcatctgcagaacttaaggtgaaggagctaaagaatgggagattagccatgttttctatgttcgggtttttcgtgcaagccattgtcactagaaagggaccaatcgaaaaacctcgccgaccatttggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

237

Amino Acids

25.7

Weight (kDa)

9.89

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019216)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37620
rosa_chinensis	RchiOBHm_Chr5g0067741
rosa_multiflora	Rmu_sc0000230.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013520 Rroxscaffold_2G00104610
rosa_samantha	Rh3CG308600 Rh5AG445100 Rh5DG476400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	525
AccII	CGCG	1 cut(s)	479
AciI	CCGC	3 cut(s)	273, 399, 479
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	2 cut(s)	153, 591
AfaI	GTAC	3 cut(s)	79, 314, 536
AfiI	CCNNNNNNNGG	3 cut(s)	247, 314, 350
AflII	CTTAAG	1 cut(s)	596
AgsI	TTSAA	2 cut(s)	88, 485
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	2 cut(s)	385, 538
AluBI	AGCT	5 cut(s)	200, 209, 217, 549, 610
AluI	AGCT	5 cut(s)	200, 209, 217, 549, 610
Alw21I	GWGCWC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	569
AoxI	GGCC	6 cut(s)	202, 250, 340, 357, 437, 506
ApaI	GGGCCC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	275, 303
ApoI	RAATTY	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	163
AspLEI	GCGC	2 cut(s)	267, 479
AspS9I	GGNCC	7 cut(s)	250, 340, 341, 358, 437, 506, 680
AsuHPI	GGTGA	3 cut(s)	257, 365, 613
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	287, 315
BccI	CCATC	2 cut(s)	370, 466
BciT130I	CCWGG	2 cut(s)	387, 540
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	5 cut(s)	9, 197, 420, 447, 672
BfmI	CTRYAG	2 cut(s)	490, 588
BfrI	CTTAAG	1 cut(s)	596
BisI	GCNGC	2 cut(s)	276, 304
BlsI	GCNGC	2 cut(s)	277, 305
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	2 cut(s)	387, 540
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	7 cut(s)	250, 340, 341, 358, 437, 506, 680
BmiI	GGNNCC	4 cut(s)	342, 360, 444, 681
BmrFI	CCNGG	2 cut(s)	387, 540
BmsI	GCATC	2 cut(s)	159, 593
BpmI	CTGGAG	1 cut(s)	561
BsaJI	CCNNGG	5 cut(s)	241, 308, 386, 502, 538
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 314, 350
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	387, 540
BseDI	CCNNGG	5 cut(s)	241, 308, 386, 502, 538
BseLI	CCNNNNNNNGG	3 cut(s)	247, 314, 350
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	287, 315
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	6 cut(s)	204, 252, 342, 359, 439, 508
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	3 cut(s)	247, 314, 350
BsmFI	GGGAC	1 cut(s)	693
BsnI	GGCC	6 cut(s)	204, 252, 342, 359, 439, 508
Bsp120I	GGGCCC	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	113, 344
Bsp143I	GATC	1 cut(s)	574
Bsp19I	CCATGG	1 cut(s)	308
BspACI	CCGC	3 cut(s)	273, 399, 479
BspANI	GGCC	6 cut(s)	204, 252, 342, 359, 439, 508
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	4 cut(s)	342, 360, 444, 681
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	1 cut(s)	569
BspTI	CTTAAG	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	5 cut(s)	241, 308, 386, 502, 538
BssMI	GATC	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	2 cut(s)	387, 540
Bst4CI	ACNGT	2 cut(s)	317, 326
BstAFI	CTTAAG	1 cut(s)	596
BstC8I	GCNNGC	4 cut(s)	52, 202, 399, 660
BstDEI	CTNAG	2 cut(s)	81, 218
BstDSI	CCRYGG	2 cut(s)	308, 502
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	267, 479
BstKTI	GATC	1 cut(s)	577
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 170, 206
BstNI	CCWGG	2 cut(s)	387, 540
BstSCI	CCNGG	2 cut(s)	385, 538
BstSFI	CTRYAG	2 cut(s)	490, 588
BstSLI	GKGCMC	1 cut(s)	344
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	287, 315
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	6 cut(s)	204, 252, 342, 359, 439, 508
BtgI	CCRYGG	2 cut(s)	308, 502
Cac8I	GCNNGC	4 cut(s)	52, 202, 399, 660
CfoI	GCGC	2 cut(s)	267, 479
Cfr13I	GGNCC	7 cut(s)	250, 340, 341, 358, 437, 506, 680
Csp6I	GTAC	3 cut(s)	78, 313, 535
CviAII	CATG	3 cut(s)	262, 309, 631
CviQI	GTAC	3 cut(s)	78, 313, 535
DdeI	CTNAG	2 cut(s)	81, 218
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	2 cut(s)	153, 591
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	385, 538
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	3 cut(s)	265, 312, 634
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	3 cut(s)	261, 308, 630
FauI	CCCGC	1 cut(s)	406
FauNDI	CATATG	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	2 cut(s)	276, 304
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	276, 304
FspBI	CTAG	5 cut(s)	9, 197, 420, 447, 672
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	2 cut(s)	266, 478
GluI	GCNGC	2 cut(s)	276, 304
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	6 cut(s)	204, 252, 342, 359, 439, 508
HapII	CCGG	1 cut(s)	440
HhaI	GCGC	2 cut(s)	267, 479
Hin1II	CATG	3 cut(s)	265, 312, 634
Hin6I	GCGC	2 cut(s)	265, 477
HinP1I	GCGC	2 cut(s)	265, 477
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	56, 407
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	3 cut(s)	257, 365, 613
Hpy166II	GTNNAC	2 cut(s)	411, 526
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	3 cut(s)	156, 469, 578
Hpy8I	GTNNAC	2 cut(s)	411, 526
HpyAV	CCTTC	3 cut(s)	201, 479, 598
HpyCH4III	ACNGT	2 cut(s)	317, 326
HpyCH4V	TGCA	4 cut(s)	71, 320, 590, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 170, 206
HpyF3I	CTNAG	2 cut(s)	81, 218
Hsp92II	CATG	3 cut(s)	265, 312, 634
HspAI	GCGC	2 cut(s)	265, 477
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	4 cut(s)	22, 442, 546, 607
Lsp1109I	GCAGC	2 cut(s)	287, 315
LweI	GCATC	2 cut(s)	159, 593
MaeI	CTAG	5 cut(s)	9, 197, 420, 447, 672
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	4 cut(s)	159, 340, 357, 584
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	2 cut(s)	113, 344
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	5 cut(s)	89, 142, 235, 255, 495
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	65, 416
Mox20I	TGGCCA	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	2 cut(s)	330, 597
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	387, 540
MvaI	CCWGG	2 cut(s)	387, 540
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	31, 170, 206
NcoI	CCATGG	1 cut(s)	308
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	1 cut(s)	574
NlaIII	CATG	3 cut(s)	265, 312, 634
NlaIV	GGNNCC	4 cut(s)	342, 360, 444, 681
NmuCI	GTSAC	1 cut(s)	667
NsbI	TGCGCA	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PdmI	GAANNNNTTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	277, 305
PleI	GAGTC	2 cut(s)	64, 415
PpsI	GAGTC	2 cut(s)	64, 415
Psp6I	CCWGG	2 cut(s)	385, 538
PspGI	CCWGG	2 cut(s)	385, 538
PspN4I	GGNNCC	4 cut(s)	342, 360, 444, 681
PspOMI	GGGCCC	1 cut(s)	340
PspPI	GGNCC	7 cut(s)	250, 340, 341, 358, 437, 506, 680
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	3 cut(s)	79, 314, 536
RsaNI	GTAC	3 cut(s)	78, 313, 535
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	330, 597
SatI	GCNGC	2 cut(s)	276, 304
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	7 cut(s)	250, 340, 341, 358, 437, 506, 680
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	2 cut(s)	65, 416
ScrFI	CCNGG	2 cut(s)	387, 540
SduI	GDGCHC	2 cut(s)	113, 344
SetI	ASST	8 cut(s)	202, 211, 219, 522, 551, 603, 612, 697
SfaNI	GCATC	2 cut(s)	159, 593
SfcI	CTRYAG	2 cut(s)	490, 588
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	5 cut(s)	89, 142, 235, 255, 495
SsiI	CCGC	3 cut(s)	273, 399, 479
SspMI	CTAG	5 cut(s)	9, 197, 420, 447, 672
StyD4I	CCNGG	2 cut(s)	385, 538
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	317, 326
TaqI	TCGA	2 cut(s)	157, 687
TaqII	GACCGA	1 cut(s)	570
TasI	AATT	5 cut(s)	89, 142, 235, 255, 495
TatI	WGTACW	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	330, 597
Tru9I	TTAA	2 cut(s)	330, 597
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	2 cut(s)	275, 303
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	2 cut(s)	44, 60
Vha464I	CTTAAG	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	680
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	5 cut(s)	9, 197, 420, 447, 672
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.