Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019216

Physical Location & Seq

Genomic Coordinates Forward (+)

16622058 .. 16622476

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCTTCTTTAGCAATGGCTCTCTCCTCCCCTTCTCTAGCTGGCCAAACCGTGAAGCTCAGTTCCTCCACATCTAATCTCCTTGGTGAGGGTCGAGTCACCATGCGCAAAACCGTAACCAAGTCCAAAACCGTATCATCTGGCAGCCCCTGGTACGGTGCAGACTATGTCAAGCACTTGGGCCCATTCTCAGATGGGCCATGCTTGGGGCTTGGGGCCTTGAGTTGTGTTTTCCCTGAACTCCTGACCTGCAACGGAGTCAAGTTTAGTGAAGCTGTTTGGTTCAAGGGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

98

Amino Acids

10.2

Weight (kDa)

9.18

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019216)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37620
rosa_chinensis	RchiOBHm_Chr5g0067741
rosa_multiflora	Rmu_sc0000230.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013520 Rroxscaffold_2G00104610
rosa_samantha	Rh3CG308600 Rh5AG445100 Rh5DG476400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	43
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	88, 155, 206
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	3 cut(s)	41, 58, 275
AluI	AGCT	3 cut(s)	41, 58, 275
AlwNI	CAGNNNCTG	1 cut(s)	150
AoxI	GGCC	4 cut(s)	43, 181, 197, 216
ApaI	GGGCCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	4 cut(s)	181, 182, 197, 216
AsuHPI	GGTGA	2 cut(s)	91, 98
BaeGI	GKGCMC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	151
BfaI	CTAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	151
BmgT120I	GGNCC	4 cut(s)	181, 182, 197, 216
BmiI	GGNNCC	2 cut(s)	183, 217
BmrFI	CCNGG	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	82, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 155, 206
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	82, 149
BseLI	CCNNNNNNNGG	3 cut(s)	88, 155, 206
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	73, 204
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	4 cut(s)	45, 183, 199, 218
BslI	CCNNNNNNNGG	3 cut(s)	88, 155, 206
BsnI	GGCC	4 cut(s)	45, 183, 199, 218
Bsp120I	GGGCCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	185
BspANI	GGCC	4 cut(s)	45, 183, 199, 218
BspCNI	CTCAG	2 cut(s)	72, 203
BspLI	GGNNCC	2 cut(s)	183, 217
BspMI	ACCTGC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	82, 149
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	4 cut(s)	52, 115, 133, 158
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	59, 190
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	45, 183, 199, 218
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	150
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	4 cut(s)	181, 182, 197, 216
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	103, 201
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	59, 190
EaeI	YGGCCR	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	106, 204
FaiI	YATR	3 cut(s)	104, 168, 202
FatI	CATG	2 cut(s)	102, 200
Fnu4HI	GCNGC	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	38
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	4 cut(s)	45, 183, 199, 218
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	106, 204
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	96, 258, 291
HphI	GGTGA	2 cut(s)	91, 98
Hpy188I	TCNGA	2 cut(s)	193, 296
Hpy188III	TCNNGA	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	4 cut(s)	52, 115, 133, 158
HpyCH4V	TGCA	2 cut(s)	161, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	59, 190
Hsp92II	CATG	2 cut(s)	106, 204
HspAI	GCGC	1 cut(s)	106
LpnPI	CCDG	7 cut(s)	27, 126, 136, 163, 249, 257, 262
Lsp1109I	GCAGC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	97, 115
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	105, 267
MnlI	CCTC	3 cut(s)	37, 76, 82
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	106, 204
NlaIV	GGNNCC	2 cut(s)	183, 217
NmuCI	GTSAC	1 cut(s)	97
NsbI	TGCGCA	1 cut(s)	107
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	2 cut(s)	104, 266
PpsI	GAGTC	2 cut(s)	104, 266
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	183, 217
PspOMI	GGGCCC	1 cut(s)	181
PspPI	GGNCC	4 cut(s)	181, 182, 197, 216
PstNI	CAGNNNCTG	1 cut(s)	150
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SatI	GCNGC	1 cut(s)	145
Sau96I	GGNCC	4 cut(s)	181, 182, 197, 216
SchI	GAGTC	2 cut(s)	105, 267
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	4 cut(s)	43, 60, 251, 277
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	4 cut(s)	52, 115, 133, 158
TaqI	TCGA	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	97
TspGWI	ACGGA	1 cut(s)	270
Tth111I	GACNNNGTC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	86
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.