Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019216

Physical Location & Seq

Genomic Coordinates Reverse (-)

27756633 .. 27756968

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTTCTTCAGAAATGGCTCTCTTCTCTCCTTCTCTAGCTGGCCAAGCAATGAAGTTCAGTTCATCTTCATCTAACCTTAATGGTGAAGGCCGAGTCACAATGCGCAAAACTGCATCCAAGTCAAAGTCGGTCTCATCTGGCAGCCCGTCGTATGGGCCCGACTGTGTTAAGTACTTGGGTCCATTCTCCTGCGAGGCACCGTCTTACTCACCGGAGAATTCCCCGGTGACTATGGTTGGGACACGGCTGGCCTCTCGGCCGATCCCGAGACTTTTGCCAAGAACCGTGAGCTCGAAGTCATCCATTCAAGATGGGCCATGCTCGGTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

111

Amino Acids

11.57

Weight (kDa)

9.6

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019216)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37620
rosa_chinensis	RchiOBHm_Chr5g0067741
rosa_multiflora	Rmu_sc0000230.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013520 Rroxscaffold_2G00104610
rosa_samantha	Rh3CG308600 Rh5AG445100 Rh5DG476400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	107
AccB1I	GGYRCC	2 cut(s)	199, 328
AclWI	GGATC	1 cut(s)	259
AcoI	YGGCCR	2 cut(s)	43, 260
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	2 cut(s)	41, 294
AluI	AGCT	2 cut(s)	41, 294
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	2 cut(s)	139, 265
AlwI	GGATC	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	6 cut(s)	43, 91, 158, 252, 260, 317
ApaI	GGGCCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	4 cut(s)	158, 159, 182, 317
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	98, 204, 241
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	2 cut(s)	162, 333
BalI	TGGCCA	1 cut(s)	45
BanI	GGYRCC	2 cut(s)	199, 328
BanII	GRGCYC	2 cut(s)	162, 296
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	139, 265
BfaI	CTAG	2 cut(s)	38, 334
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	4 cut(s)	158, 159, 182, 317
BmiI	GGNNCC	4 cut(s)	160, 183, 201, 330
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	116, 302
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	57
BseSI	GKGCMC	2 cut(s)	162, 333
BseX3I	CGGCCG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	6 cut(s)	45, 93, 160, 254, 262, 319
BshNI	GGYRCC	2 cut(s)	199, 328
BsiEI	CGRYCG	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	215, 227
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	139, 265
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	6 cut(s)	45, 93, 160, 254, 262, 319
Bso31I	GGTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	268
Bsp120I	GGGCCC	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	162, 296, 333
Bsp143I	GATC	1 cut(s)	264
BspANI	GGCC	6 cut(s)	45, 93, 160, 254, 262, 319
BspLI	GGNNCC	4 cut(s)	160, 183, 201, 330
BspPI	GGATC	1 cut(s)	259
BspT107I	GGYRCC	2 cut(s)	199, 328
BspTNI	GGTCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	167, 204, 289
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	43, 252
BstF5I	GGATG	2 cut(s)	116, 302
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	2 cut(s)	139, 265
BstMBI	GATC	1 cut(s)	264
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	225
BstSLI	GKGCMC	2 cut(s)	162, 333
BstV1I	GCAGC	1 cut(s)	156
BstZI	CGGCCG	1 cut(s)	260
BsuRI	GGCC	6 cut(s)	45, 93, 160, 254, 262, 319
BtsCI	GGATG	2 cut(s)	116, 302
Cac8I	GCNNGC	2 cut(s)	43, 252
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	4 cut(s)	158, 159, 182, 317
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	321
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
EaeI	YGGCCR	2 cut(s)	43, 260
EagI	CGGCCG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	294
EclXI	CGGCCG	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	162, 296
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	162, 296
FaeI	CATG	1 cut(s)	324
FaiI	YATR	3 cut(s)	156, 236, 322
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	2 cut(s)	103, 289
FriOI	GRGCYC	2 cut(s)	162, 296
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	38, 334
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	6 cut(s)	45, 93, 160, 254, 262, 319
HapII	CCGG	2 cut(s)	215, 227
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	324
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	2 cut(s)	215, 227
HphI	GGTGA	3 cut(s)	98, 204, 241
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	268, 311
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	42, 83
HpyCH4III	ACNGT	3 cut(s)	167, 204, 289
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	324
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	264
LpnPI	CCDG	6 cut(s)	27, 126, 205, 228, 236, 240
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	38, 334
MaeIII	GTNAC	2 cut(s)	97, 229
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	2 cut(s)	16, 60
MhlI	GDGCHC	3 cut(s)	162, 296, 333
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	1 cut(s)	220
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	2 cut(s)	190, 265
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	2 cut(s)	81, 171
Msp20I	TGGCCA	1 cut(s)	45
MspI	CCGG	2 cut(s)	215, 227
MspR9I	CCNGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	1 cut(s)	324
NlaIV	GGNNCC	4 cut(s)	160, 183, 201, 330
NmeAIII	GCCGAG	2 cut(s)	119, 238
NmuCI	GTSAC	2 cut(s)	97, 229
NsbI	TGCGCA	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	296
PspN4I	GGNNCC	4 cut(s)	160, 183, 201, 330
PspOMI	GGGCCC	1 cut(s)	158
PspPI	GGNCC	4 cut(s)	158, 159, 182, 317
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	81, 171
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	4 cut(s)	158, 159, 182, 317
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	3 cut(s)	162, 296, 333
SetI	ASST	3 cut(s)	43, 81, 296
SfaNI	GCATC	1 cut(s)	125
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	1 cut(s)	220
SspMI	CTAG	2 cut(s)	38, 334
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	3 cut(s)	167, 204, 289
TaqI	TCGA	1 cut(s)	296
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	81, 171
Tru9I	TTAA	2 cut(s)	81, 171
TseFI	GTSAC	2 cut(s)	97, 229
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	2 cut(s)	97, 229
TspDTI	ATGAA	3 cut(s)	54, 60, 68
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	220
XspI	CTAG	2 cut(s)	38, 334
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.