FvH4_3g38280

anion transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
32667195 .. 32671231
4037 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38280.t1

Sequence Viewer

Length: 1524 bp
ATGAACGCCAGAGCCCTGGTCTACTCTTTCTCTCCTAAACCCAATTTCCCGCCCGATATCTCCGGCCCCAAGAGAAGTCTCGGGTCCGGTTTCAGACCCGTGAGCCCGGTTCATCAGTTCCTGGTCAACCGGGGGCAGTACTGCTGCGTCGTGCGAGTTTCGGGTGAGAGGAGAGGCGGGAAAGTGTTTGCGGATGTTAAGTCGGAGGCGTATGAGTTGTCGAAGAAGGCGAAGGAGGAGTTGGAGAGTGTGGCGGATGAGGTCTCGTGGTTGGAGCAGTTTCCGAAACGATGGGTTATTGTCATTTTGTGCTTCACGGCTTTTCTTCTTTGCAACATGGACAGAGTAAATATGAGCATTGCTATACTTCCGATGTCAGCAGAGTACCATTGGAACTCATCGACTGTGGGTTTGATACAGTCTTCTTTTTTCTGGGGCTACCTCCTCACTCAGATTGCTGGTGGCATTTTGGCAGACACAATAGGTGGGAAGCAGGTTTTGGCATTTGGAGTTATTTGGTGGTCTGTGGCTACTGCTCTCACTCCTATTGCTGCTACACTTGGATTGCCATTCCTTCTTGTTGTTCGCGCTTTCATGGGGATTGGTGAGGGAGTCGCTATGCCTGCAATGAATAATATTCTGTCAAAATGGATTCCAGTATCAGAGAGGAGTAGAGCCTTGGCTCTGGTTTACAGTGGGATGTACATTGGTTCAGTCACTGGCTTTGCATTTTCACCTTTTTTAATACACCAGTTTGGATGGCCATCAGTCTTTTACTCCTTCGGTTCCCTGGGGACAGTCTGGTTTGCTGTTTGGCTAAGTAAGGCATACAGTTCACCTGCTGAGGATCCTGAGCTGAGACCTGAAGAGAAGAAGCTAATTCTTGCCGGTAATGTGTCTAAGGAACGCGTAAAAGTGATTCCTTGGGGACAAATTTTGTCCAAAGCACCTGTTTGGGCCCTGATAGTTTCTCACTTCTGTCACAACTGGGGAACATTTATTCTTCTTACATGGATGCCAACATACTATAACCAAGTGCTGAAGTTCAATCTTACAGAATCGGGGCTTTTCTGCGTCTTGCCCTGGCTTACAATGGCATTCTCTGCAAACCTTGGAGGGTGGATAGCAGACACACTTGTGAGTAGGGGTGTATCGGTGACAAGGGTTCGTAAGATTATGCAGACAATTGGGTTTCTTGGCCCTGCTTTCTTCCTGACTCAGTTGAGCCATGTCAATTCTCCTGCAATGGCTGTTTTATGTATGGCATGCAGTCAGGGAACTGATGCCTTCTCACAATCCGGTCTATATTCAAACCATCAAGATATTGCTCCACGATATTCTGGAGTATTGCTTGGTCTGTCCAATACTGCTGGTGTTCTGGCCGGTGTCTTAGGAACGGTGTCAACTGGTTACATTTTGCAACATGGTTCTTGGGATGATGTATTCAAGGTCTCAGTAGGCCTTTATCTGGTGGGAACTGTTGTCTGGAATGTTTTCTCAACCGGCGAGAAGATCATAGATTAG

Protein Analysis

508

Amino Acids

55.63

Weight (kDa)

8.98

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 104 - 466 1.1e-61 Major Facilitator Superfamily
MFS_3 PF05977 105 - 272 9e-06 Transmembrane secretion effector
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 847
Acc36I ACCTGC 2 cut(s) 484, 847
AccI GTMKAC 1 cut(s) 21
AccII CGCG 2 cut(s) 588, 909
AciI CCGC 4 cut(s) 50, 177, 191, 254
AclWI GGATC 2 cut(s) 842, 855
AcoI YGGCCR 2 cut(s) 761, 1380
AcsI RAATTY 1 cut(s) 933
AcuI CTGAAG 2 cut(s) 885, 1061
AfaI GTAC 3 cut(s) 140, 386, 704
AfiI CCNNNNNNNGG 1 cut(s) 1468
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 3 cut(s) 1048, 1311, 1447
AjnI CCWGG 4 cut(s) 15, 120, 789, 1082
AjuI GAANNNNNNNTTGG 4 cut(s) 224, 256, 482, 514
AleI CACNNNNGTG 1 cut(s) 1136
AluBI AGCT 2 cut(s) 856, 877
AluI AGCT 2 cut(s) 856, 877
Alw26I GTCTC 4 cut(s) 83, 268, 853, 1456
AlwI GGATC 2 cut(s) 842, 855
AlwNI CAGNNNCTG 2 cut(s) 121, 719
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 6 cut(s) 64, 761, 957, 1198, 1380, 1459
ApaI GGGCCC 1 cut(s) 961
ApeKI GCWGC 2 cut(s) 144, 551
ApoI RAATTY 1 cut(s) 933
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
Asp700I GAANNNNTTC 1 cut(s) 1493
AspLEI GCGC 1 cut(s) 590
AspS9I GGNCC 5 cut(s) 65, 84, 957, 958, 1199
AsuC2I CCSGG 2 cut(s) 107, 131
AsuHPI GGTGA 5 cut(s) 176, 617, 726, 828, 1168
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 961
BalI TGGCCA 1 cut(s) 763
BamHI GGATCC 1 cut(s) 847
BanII GRGCYC 3 cut(s) 16, 107, 961
BauI CACGAG 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 2 cut(s) 131, 538
BccI CCATC 4 cut(s) 285, 753, 772, 1323
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 4 cut(s) 17, 122, 791, 1084
BcnI CCSGG 2 cut(s) 107, 131
BcoDI GTCTC 4 cut(s) 83, 268, 853, 1456
BfuAI ACCTGC 2 cut(s) 484, 847
BisI GCNGC 2 cut(s) 145, 552
BlsI GCNGC 2 cut(s) 146, 553
BmcAI AGTACT 1 cut(s) 140
Bme1390I CCNGG 6 cut(s) 17, 107, 122, 131, 791, 1084
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 5 cut(s) 65, 84, 957, 958, 1199
BmiI GGNNCC 5 cut(s) 67, 85, 787, 849, 959
BmrFI CCNGG 6 cut(s) 17, 107, 122, 131, 791, 1084
BmrI ACTGGG 1 cut(s) 997
BmsI GCATC 2 cut(s) 1005, 1273
BmuI ACTGGG 1 cut(s) 997
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 1362
Bpu10I CCTNAGC 2 cut(s) 843, 852
BpuMI CCSGG 2 cut(s) 107, 131
BsaBI GATNNNNATC 1 cut(s) 763
BsaI GGTCTC 3 cut(s) 268, 853, 1456
BsaJI CCNNGG 8 cut(s) 15, 130, 678, 789, 790, 923, 1082, 1111
BsaWI WCCGGW 2 cut(s) 86, 1298
Bsc4I CCNNNNNNNGG 1 cut(s) 1468
Bse118I RCCGGY 3 cut(s) 887, 1382, 1502
Bse1I ACTGG 5 cut(s) 656, 724, 751, 992, 1411
Bse3DI GCAATG 3 cut(s) 357, 633, 1251
Bse8I GATNNNNATC 1 cut(s) 763
BseBI CCWGG 4 cut(s) 17, 122, 791, 1084
BseDI CCNNGG 8 cut(s) 15, 130, 678, 789, 790, 923, 1082, 1111
BseGI GGATG 6 cut(s) 199, 262, 705, 764, 1020, 1441
BseJI GATNNNNATC 1 cut(s) 763
BseLI CCNNNNNNNGG 1 cut(s) 1468
BseMI GCAATG 3 cut(s) 357, 633, 1251
BseMII CTCAG 6 cut(s) 464, 834, 843, 848, 1232, 1467
BseNI ACTGG 5 cut(s) 656, 724, 751, 992, 1411
BseRI GAGGAG 4 cut(s) 184, 251, 434, 682
BseSI GKGCMC 1 cut(s) 961
BseXI GCAGC 2 cut(s) 131, 538
Bsh1236I CGCG 2 cut(s) 588, 909
BshFI GGCC 6 cut(s) 66, 763, 959, 1200, 1382, 1461
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 8 cut(s) 63, 87, 107, 130, 888, 1299, 1383, 1503
BslFI GGGAC 2 cut(s) 808, 942
BslI CCNNNNNNNGG 1 cut(s) 1468
BsmAI GTCTC 4 cut(s) 83, 268, 853, 1456
BsmFI GGGAC 2 cut(s) 808, 942
BsmI GAATGC 1 cut(s) 1097
BsnI GGCC 6 cut(s) 66, 763, 959, 1200, 1382, 1461
Bso31I GGTCTC 3 cut(s) 268, 853, 1456
BsoBI CYCGRG 1 cut(s) 80
Bsp120I GGGCCC 1 cut(s) 957
Bsp1286I GDGCHC 3 cut(s) 16, 107, 961
Bsp1407I TGTACA 1 cut(s) 702
Bsp143I GATC 2 cut(s) 847, 1512
BspACI CCGC 4 cut(s) 50, 177, 191, 254
BspANI GGCC 6 cut(s) 66, 763, 959, 1200, 1382, 1461
BspCNI CTCAG 6 cut(s) 463, 835, 844, 849, 1231, 1466
BspFNI CGCG 2 cut(s) 588, 909
BspLI GGNNCC 5 cut(s) 67, 85, 787, 849, 959
BspMI ACCTGC 2 cut(s) 484, 847
BspPI GGATC 2 cut(s) 842, 855
BspTNI GGTCTC 3 cut(s) 268, 853, 1456
BsrDI GCAATG 3 cut(s) 357, 633, 1251
BsrFI RCCGGY 3 cut(s) 887, 1382, 1502
BsrGI TGTACA 1 cut(s) 702
BsrI ACTGG 5 cut(s) 656, 724, 751, 992, 1411
BssAI RCCGGY 3 cut(s) 887, 1382, 1502
BssECI CCNNGG 8 cut(s) 15, 130, 678, 789, 790, 923, 1082, 1111
BssMI GATC 2 cut(s) 847, 1512
BssSI CACGAG 1 cut(s) 265
BssT1I CCWWGG 3 cut(s) 678, 923, 1111
Bst2BI CACGAG 1 cut(s) 265
Bst2UI CCWGG 4 cut(s) 17, 122, 791, 1084
Bst4CI ACNGT 7 cut(s) 406, 420, 695, 799, 833, 1399, 1480
Bst6I CTCTTC 1 cut(s) 861
BstAPI GCANNNNNTGC 1 cut(s) 1103
BstAUI TGTACA 1 cut(s) 702
BstC8I GCNNGC 2 cut(s) 624, 1267
BstDEI CTNAG 9 cut(s) 450, 818, 843, 852, 857, 900, 1218, 1390, 1453
BstF5I GGATG 6 cut(s) 199, 262, 705, 764, 1020, 1441
BstFNI CGCG 2 cut(s) 588, 909
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 2 cut(s) 850, 1515
BstMAI GTCTC 4 cut(s) 83, 268, 853, 1456
BstMBI GATC 2 cut(s) 847, 1512
BstMWI GCNNNNNNNGC 2 cut(s) 623, 1103
BstNI CCWGG 4 cut(s) 17, 122, 791, 1084
BstNSI RCATGY 1 cut(s) 1269
BstSCI CCNGG 6 cut(s) 15, 105, 120, 129, 789, 1082
BstSLI GKGCMC 1 cut(s) 961
BstUI CGCG 2 cut(s) 588, 909
BstV1I GCAGC 2 cut(s) 131, 538
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 847
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 847
BsuRI GGCC 6 cut(s) 66, 763, 959, 1200, 1382, 1461
BtsCI GGATG 6 cut(s) 199, 262, 705, 764, 1020, 1441
BtsIMutI CAGTG 2 cut(s) 700, 717
BveI ACCTGC 2 cut(s) 484, 847
Cac8I GCNNGC 2 cut(s) 624, 1267
CaiI CAGNNNCTG 2 cut(s) 121, 719
CfoI GCGC 1 cut(s) 590
Cfr10I RCCGGY 3 cut(s) 887, 1382, 1502
Cfr13I GGNCC 5 cut(s) 65, 84, 957, 958, 1199
CseI GACGC 2 cut(s) 136, 1063
Csp6I GTAC 3 cut(s) 139, 385, 703
CviAII CATG 6 cut(s) 337, 595, 1011, 1229, 1266, 1424
CviQI GTAC 3 cut(s) 139, 385, 703
DdeI CTNAG 9 cut(s) 450, 818, 843, 852, 857, 900, 1218, 1390, 1453
DpnI GATC 2 cut(s) 849, 1514
DpnII GATC 2 cut(s) 847, 1512
EaeI YGGCCR 2 cut(s) 761, 1380
Eam1104I CTCTTC 1 cut(s) 861
EarI CTCTTC 1 cut(s) 861
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 3 cut(s) 678, 923, 1111
Eco147I AGGCCT 1 cut(s) 1461
Eco24I GRGCYC 3 cut(s) 16, 107, 961
Eco31I GGTCTC 3 cut(s) 268, 853, 1456
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 885, 1061
Eco88I CYCGRG 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 958
EcoRII CCWGG 4 cut(s) 15, 120, 789, 1082
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 3 cut(s) 678, 923, 1111
EcoT38I GRGCYC 3 cut(s) 16, 107, 961
ErhI CCWWGG 3 cut(s) 678, 923, 1111
FaeI CATG 6 cut(s) 340, 598, 1014, 1232, 1269, 1427
FaqI GGGAC 2 cut(s) 808, 942
FatI CATG 6 cut(s) 336, 594, 1010, 1228, 1265, 1423
FauI CCCGC 2 cut(s) 57, 170
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 145, 552
FokI GGATG 6 cut(s) 206, 269, 712, 771, 1027, 1448
FriOI GRGCYC 3 cut(s) 16, 107, 961
Fsp4HI GCNGC 2 cut(s) 145, 552
GlaI GCGC 1 cut(s) 589
GluI GCNGC 2 cut(s) 145, 552
GsuI CTGGAG 1 cut(s) 1362
HaeIII GGCC 6 cut(s) 66, 763, 959, 1200, 1382, 1461
HapII CCGG 8 cut(s) 63, 87, 107, 130, 888, 1299, 1383, 1503
HgaI GACGC 2 cut(s) 136, 1063
HhaI GCGC 1 cut(s) 590
Hin1II CATG 6 cut(s) 340, 598, 1014, 1232, 1269, 1427
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HincII GTYRAC 2 cut(s) 127, 1404
HindII GTYRAC 2 cut(s) 127, 1404
HinfI GANTC 5 cut(s) 612, 652, 919, 1058, 1216
HpaII CCGG 8 cut(s) 63, 87, 107, 130, 888, 1299, 1383, 1503
HphI GGTGA 5 cut(s) 176, 617, 726, 828, 1168
Hpy166II GTNNAC 5 cut(s) 22, 127, 691, 836, 1404
Hpy188I TCNGA 6 cut(s) 95, 205, 285, 372, 453, 664
Hpy188III TCNNGA 5 cut(s) 851, 1213, 1319, 1341, 1486
Hpy8I GTNNAC 5 cut(s) 22, 127, 691, 836, 1404
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 5 cut(s) 220, 226, 584, 790, 1297
HpyCH4III ACNGT 7 cut(s) 406, 420, 695, 799, 833, 1399, 1480
HpyCH4V TGCA 8 cut(s) 333, 626, 728, 1106, 1180, 1244, 1269, 1420
HpyF10VI GCNNNNNNNGC 2 cut(s) 623, 1103
HpyF3I CTNAG 9 cut(s) 450, 818, 843, 852, 857, 900, 1218, 1390, 1453
Hsp92II CATG 6 cut(s) 340, 598, 1014, 1232, 1269, 1427
HspAI GCGC 1 cut(s) 588
Kzo9I GATC 2 cut(s) 847, 1512
LmnI GCTCC 2 cut(s) 274, 1333
Lsp1109I GCAGC 2 cut(s) 131, 538
LweI GCATC 2 cut(s) 1005, 1273
MaeIII GTNAC 4 cut(s) 715, 980, 1156, 1409
MalI GATC 2 cut(s) 849, 1514
MboI GATC 2 cut(s) 847, 1512
MboII GAAGA 8 cut(s) 235, 317, 414, 878, 883, 995, 1201, 1522
MfeI CAATTG 1 cut(s) 1185
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 3 cut(s) 16, 107, 961
MlsI TGGCCA 1 cut(s) 763
MluCI AATT 5 cut(s) 43, 879, 933, 1185, 1234
MluI ACGCGT 1 cut(s) 907
MluNI TGGCCA 1 cut(s) 763
MlyI GAGTC 2 cut(s) 621, 1210
MmeI TCCRAC 3 cut(s) 183, 222, 252
Mox20I TGGCCA 1 cut(s) 763
MroXI GAANNNNTTC 1 cut(s) 1493
MscI TGGCCA 1 cut(s) 763
MseI TTAA 2 cut(s) 198, 743
MslI CAYNNNNRTG 1 cut(s) 1136
Msp20I TGGCCA 1 cut(s) 763
MspI CCGG 8 cut(s) 63, 87, 107, 130, 888, 1299, 1383, 1503
MspR9I CCNGG 6 cut(s) 17, 107, 122, 131, 791, 1084
MunI CAATTG 1 cut(s) 1185
Mva1269I GAATGC 1 cut(s) 1097
MvaI CCWGG 4 cut(s) 17, 122, 791, 1084
MvnI CGCG 2 cut(s) 588, 909
MwoI GCNNNNNNNGC 2 cut(s) 623, 1103
NciI CCSGG 2 cut(s) 107, 131
NdeII GATC 2 cut(s) 847, 1512
NlaIII CATG 6 cut(s) 340, 598, 1014, 1232, 1269, 1427
NlaIV GGNNCC 5 cut(s) 67, 85, 787, 849, 959
NmuCI GTSAC 3 cut(s) 715, 980, 1156
NspI RCATGY 1 cut(s) 1269
OliI CACNNNNGTG 1 cut(s) 1136
PaeI GCATGC 1 cut(s) 1269
PaqCI CACCTGC 1 cut(s) 847
PasI CCCWGGG 1 cut(s) 790
PceI AGGCCT 1 cut(s) 1461
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PctI GAATGC 1 cut(s) 1097
PdmI GAANNNNTTC 1 cut(s) 1493
PfeI GAWTC 3 cut(s) 652, 919, 1058
PkrI GCNGC 2 cut(s) 146, 553
PleI GAGTC 2 cut(s) 620, 1210
PpsI GAGTC 2 cut(s) 620, 1210
Psp6I CCWGG 4 cut(s) 15, 120, 789, 1082
PspGI CCWGG 4 cut(s) 15, 120, 789, 1082
PspN4I GGNNCC 5 cut(s) 67, 85, 787, 849, 959
PspOMI GGGCCC 1 cut(s) 957
PspPI GGNCC 5 cut(s) 65, 84, 957, 958, 1199
PstNI CAGNNNCTG 2 cut(s) 121, 719
PsuI RGATCY 1 cut(s) 847
RsaI GTAC 3 cut(s) 140, 386, 704
RsaNI GTAC 3 cut(s) 139, 385, 703
RseI CAYNNNNRTG 1 cut(s) 1136
SaqAI TTAA 2 cut(s) 198, 743
SatI GCNGC 2 cut(s) 145, 552
Sau3AI GATC 2 cut(s) 847, 1512
Sau96I GGNCC 5 cut(s) 65, 84, 957, 958, 1199
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 2 cut(s) 621, 1210
ScrFI CCNGG 6 cut(s) 17, 107, 122, 131, 791, 1084
SduI GDGCHC 3 cut(s) 16, 107, 961
SfaNI GCATC 2 cut(s) 1005, 1273
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 1136
SphI GCATGC 1 cut(s) 1269
Sse9I AATT 5 cut(s) 43, 879, 933, 1185, 1234
SseBI AGGCCT 1 cut(s) 1461
SsiI CCGC 4 cut(s) 50, 177, 191, 254
SspI AATATT 1 cut(s) 637
StuI AGGCCT 1 cut(s) 1461
StyD4I CCNGG 6 cut(s) 15, 105, 120, 129, 789, 1082
StyI CCWWGG 3 cut(s) 678, 923, 1111
TaaI ACNGT 7 cut(s) 406, 420, 695, 799, 833, 1399, 1480
TaqI TCGA 2 cut(s) 221, 401
TasI AATT 5 cut(s) 43, 879, 933, 1185, 1234
TatI WGTACW 2 cut(s) 138, 702
TfiI GAWTC 3 cut(s) 652, 919, 1058
Tru1I TTAA 2 cut(s) 198, 743
Tru9I TTAA 2 cut(s) 198, 743
TscAI CASTG 2 cut(s) 700, 724
TseFI GTSAC 3 cut(s) 715, 980, 1156
TseI GCWGC 2 cut(s) 144, 551
Tsp45I GTSAC 3 cut(s) 715, 980, 1156
TspDTI ATGAA 4 cut(s) 17, 101, 583, 644
TspRI CASTG 2 cut(s) 700, 724
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 933
XceI RCATGY 1 cut(s) 1269
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 1493
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.