MD01G1081800.v1.1

Sodium-dependent phosphate transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0007073
Physical Location & Seq
Forward (+)
18837682 .. 18838442
761 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1081800.v1.1.491

Sequence Viewer

Length: 507 bp
ATGAACGCCAAAGCACTTCTTTACTCCTTCTCTCTGAAGCCTAATATTGCCCCGCCTGATTTTTCGGCCACCAAGAGAAGTTTCAGCGCCGATGACCTGAGACCCCAAACGCCGTTTTGGTTTCGAGTGCGGATTCGGAACAGGGAGCAGTACTGCTGTTTCTTTCGCGTTTCGGGCGGCGAAGGCAAAAACCGGATGAGCGGGAAAGTGTTTGCAGACGTTAAATCGGAGGCGCACGACATATCGGAACCCGTGGATAAGTTCGACAAAGGGTTGAACGATGTCGTTTTGGTGAAGCAGGATTTGGAAGCGGAGTCTACGACGGAGATTACTGGTGGAATATGGGCAGACATAGTAGGTGGGAAGCAAGTACTGGCATTTGGAGTCATTTGGCGGTCCATTACTACTATTCTCACTCATGTTGCTGCTAAAATTGGATTGCCTTTCCTACTAGTTGTTCGCGCTTTCTTGGGGATTGGTGAGGGTATATTTGGCTCTGGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

169

Amino Acids

18.5

Weight (kDa)

8.95

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 110 - 165 6.5e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 317
AccII CGCG 2 cut(s) 168, 462
AciI CCGC 6 cut(s) 53, 130, 177, 201, 311, 394
AcoI YGGCCR 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 152, 372
AgsI TTSAA 1 cut(s) 277
AhlI ACTAGT 1 cut(s) 451
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 287, 319
Alw26I GTCTC 1 cut(s) 94
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 425
AspLEI GCGC 3 cut(s) 89, 235, 464
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 2 cut(s) 304, 491
AvaII GGWCC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 94
BcuI ACTAGT 1 cut(s) 451
BfaI CTAG 1 cut(s) 452
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 2 cut(s) 178, 426
BlsI GCNGC 2 cut(s) 179, 427
BmcAI AGTACT 2 cut(s) 152, 372
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 192
Bse1I ACTGG 2 cut(s) 337, 378
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 337, 378
BseXI GCAGC 1 cut(s) 412
Bsh1236I CGCG 2 cut(s) 168, 462
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 94
BspACI CCGC 6 cut(s) 53, 130, 177, 201, 311, 394
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 2 cut(s) 168, 462
BspLI GGNNCC 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 201
BsrI ACTGG 2 cut(s) 337, 378
BssECI CCNNGG 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 2 cut(s) 168, 462
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 3 cut(s) 89, 235, 464
BstMAI GTCTC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 174, 183
BstUI CGCG 2 cut(s) 168, 462
BstV1I GCAGC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 201
CfoI GCGC 3 cut(s) 89, 235, 464
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 2 cut(s) 151, 371
CviAII CATG 1 cut(s) 419
CviJI RGCY 3 cut(s) 40, 68, 495
CviKI_1 RGCY 3 cut(s) 40, 68, 495
CviQI GTAC 2 cut(s) 151, 371
DdeI CTNAG 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 56
FaeI CATG 1 cut(s) 422
FaiI YATR 6 cut(s) 242, 343, 353, 420, 488, 505
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 1 cut(s) 418
FauI CCCGC 2 cut(s) 60, 194
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 2 cut(s) 178, 426
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 178, 426
FspBI CTAG 1 cut(s) 452
GlaI GCGC 3 cut(s) 88, 234, 463
GluI GCNGC 2 cut(s) 178, 426
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 193
HhaI GCGC 3 cut(s) 89, 235, 464
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 3 cut(s) 87, 233, 462
HinP1I GCGC 3 cut(s) 87, 233, 462
HinfI GANTC 3 cut(s) 133, 314, 384
HpaII CCGG 1 cut(s) 193
HphI GGTGA 2 cut(s) 304, 491
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 4 cut(s) 36, 138, 229, 247
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 37, 176
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 183
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 3 cut(s) 87, 233, 462
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 8 cut(s) 69, 110, 127, 206, 284, 318, 359, 483
Lsp1109I GCAGC 1 cut(s) 412
MaeI CTAG 1 cut(s) 452
MaeII ACGT 1 cut(s) 219
MbiI CCGCTC 1 cut(s) 201
MluCI AATT 1 cut(s) 432
MlyI GAGTC 2 cut(s) 323, 393
MnlI CCTC 2 cut(s) 223, 475
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 193
MvnI CGCG 2 cut(s) 168, 462
MwoI GCNNNNNNNGC 2 cut(s) 174, 183
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 179, 427
PleI GAGTC 2 cut(s) 322, 392
PpsI GAGTC 2 cut(s) 322, 392
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 396
RsaI GTAC 2 cut(s) 152, 372
RsaNI GTAC 2 cut(s) 151, 371
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 178, 426
Sau96I GGNCC 1 cut(s) 396
ScaI AGTACT 2 cut(s) 152, 372
SchI GAGTC 2 cut(s) 323, 393
SetI ASST 3 cut(s) 99, 222, 361
SinI GGWCC 1 cut(s) 396
SpeI ACTAGT 1 cut(s) 451
Sse9I AATT 1 cut(s) 432
SsiI CCGC 6 cut(s) 53, 130, 177, 201, 311, 394
SspI AATATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 452
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 124, 264
TasI AATT 1 cut(s) 432
TatI WGTACW 2 cut(s) 150, 370
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 1 cut(s) 452
ZrmI AGTACT 2 cut(s) 152, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.