Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007073

Physical Location & Seq

Genomic Coordinates Reverse (-)

53862309 .. 53865414

Gene Structure 3106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0393300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTTTAATCCCGTGGAAGAGAAGAACATTATGGAATCTCCCCCTATCTCTCCCCTAAGCAGTGAACCGGAGCCGAACAACAGTAAACAATTGGTGGAGTGTCTTCCACAGTCTGACCTTATCGCCAATGAGTTGGTGGAGTTTCCTCCACAGACGTCTGACCCCATCGCCGATGAGTTGGTGGAGTCTTCTCTGCAGTCTAATCCCATTGCCAATGAGTTGTTGGAGTCTCCTCCACAGTCTGAGTCTGACCCCATCGCCGATGAGAACAATGAAGCACTATCAGCTGAAGAAGGCGGTCAATCGGAGGCAGGTGAAGTGATGATGACACCTAAGAAGAAGAGGGGGAGACCCAGGAATTATGAGGTCAATGAAGAAATGGTCTCTGATGTTCCAGCTTCCAACTCAGAGGGCTCCTCTAAGAAAGCAAAAGGCCGCCCCAAAGGCTCAGGCAATAAATTGCAACGCCCCGCTGCTGATGAAACTGGTGGAGCTGGAAATAACTTCATCCCTTTCGCAGTGACTGTGCAGACTGGGGAGGACCTTCTTCATAAAATATGGGTCATGGCACATAGGGACCATCAATCAATTTGCATTCTTTCGGCTACTGGTGCTGTTTCTAAGCCTGTCATACGACCTAATGCTGCTGTAGGGTATGTAAAATACGAGGGTTGTTATGATATCATCAATCTCTCTGGATCGTTTGTATACCATGCAATGTATCCACACAAAAAATTGGGCATGATAACTATTCTACTGGCTAATCCCGATAATACGGTTTTTGGTGGCTCTGTTTTATCAGGAGCACCGCTCATAGCTGCGAGTCCTATTCAACTCATTCTCGGAGCTTTTGATCAAGATATACACGAAGAGTTGAATGCGAAAAGGAGGCCCTCAGTCGCATCTTCTACATACACGAGTGTAACAGCTGGTCTAGACCTTGCAAGGATTCCTGCACAAGTGATGCCGATCCAAGCAGTAGATCGGGATGAAACTCGTATTCAATATCGACGAATATCTCCATATTTCAACAACAGTCGAGATGGGACTCGTGTTCAATATCAACCAATACCTCCATATTTCAACAACAGTACGTCTTCCTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055035 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

369

Amino Acids

40.09

Weight (kDa)

4.97

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	171 - 285	7.5e-14	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29650 AT2G29650 AT2G29650 AT2G29650
fragaria_vesca	FvH4_3g38280 FvH4_3g38280
malus_domestica	MD01G1081800.v1.1 MD03G1073500.v1.1 MD11G1079500.v1.1
prunus_persica	Prupe.6G060100_v2.0.a1 Prupe.6G060100_v2.0.a1
pyrus_communis	pycom03g05940 pycom11g06700
rosa_chinensis	RchiOBHm_Chr5g0068811
rosa_laevigata	RLG00000036010
rosa_multiflora	Rmu_sc0000376.1_g000038 Rmu_ssc0000427.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012030
rosa_rugosa	Rorug05G0393200 Rorug05G0393300
rosa_samantha	Rh5AG450700 Rh5BG469200 Rh5CG491400 Rh5DG482500
rosa_wichuraiana	Rw5G042070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
AatII	GACGTC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	811
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	4 cut(s)	297, 436, 471, 809
AclWI	GGATC	2 cut(s)	706, 964
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	1 cut(s)	1093
AgsI	TTSAA	6 cut(s)	833, 877, 1004, 1030, 1058, 1084
AjnI	CCWGG	1 cut(s)	353
AluBI	AGCT	6 cut(s)	287, 398, 494, 818, 848, 929
AluI	AGCT	6 cut(s)	287, 398, 494, 818, 848, 929
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	3 cut(s)	234, 343, 388
AlwI	GGATC	2 cut(s)	706, 964
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	433, 890
ApeKI	GCWGC	3 cut(s)	473, 644, 818
AspS9I	GGNCC	3 cut(s)	541, 577, 891
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	541, 577
BanII	GRGCYC	1 cut(s)	416
BauI	CACGAG	2 cut(s)	916, 1050
BbsI	GAAGAC	3 cut(s)	95, 180, 1089
Bbv12I	GWGCWC	1 cut(s)	808
BbvI	GCAGC	3 cut(s)	460, 631, 805
BccI	CCATC	4 cut(s)	173, 263, 588, 1037
BciT130I	CCWGG	1 cut(s)	355
BciVI	GTATCC	1 cut(s)	732
BclI	TGATCA	1 cut(s)	853
BcoDI	GTCTC	3 cut(s)	234, 343, 388
BfaI	CTAG	1 cut(s)	935
BfmI	CTRYAG	2 cut(s)	194, 648
BfuAI	ACCTGC	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	732
BglI	GCCNNNNNGGC	1 cut(s)	444
BisI	GCNGC	4 cut(s)	436, 474, 645, 819
BlsI	GCNGC	4 cut(s)	437, 475, 646, 820
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	2 cut(s)	541, 577
BmgT120I	GGNCC	3 cut(s)	541, 577, 891
BmiI	GGNNCC	3 cut(s)	72, 415, 578
BmrFI	CCNGG	1 cut(s)	355
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	911, 954
BmuI	ACTGGG	1 cut(s)	543
BpiI	GAAGAC	3 cut(s)	95, 180, 1089
BplI	GAGNNNNNCTC	4 cut(s)	401, 433, 795, 827
Bpu10I	CCTNAGC	2 cut(s)	56, 448
BsaBI	GATNNNNATC	1 cut(s)	968
BsaHI	GRCGYC	1 cut(s)	155
BsaI	GGTCTC	2 cut(s)	343, 388
BsaJI	CCNNGG	2 cut(s)	12, 353
BsaWI	WCCGGW	1 cut(s)	67
Bse1I	ACTGG	4 cut(s)	490, 538, 613, 762
Bse3DI	GCAATG	2 cut(s)	207, 723
Bse8I	GATNNNNATC	1 cut(s)	968
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	12, 353
BseGI	GGATG	2 cut(s)	507, 994
BseJI	GATNNNNATC	1 cut(s)	968
BseMI	GCAATG	2 cut(s)	207, 723
BseMII	CTCAG	4 cut(s)	234, 420, 462, 909
BseNI	ACTGG	4 cut(s)	490, 538, 613, 762
BseRI	GAGGAG	2 cut(s)	222, 406
BseXI	GCAGC	3 cut(s)	460, 631, 805
BsgI	GTGCAG	2 cut(s)	548, 939
BshFI	GGCC	2 cut(s)	435, 892
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	590, 1060
BsmAI	GTCTC	3 cut(s)	234, 343, 388
BsmFI	GGGAC	2 cut(s)	590, 1060
BsmI	GAATGC	2 cut(s)	594, 883
BsnI	GGCC	2 cut(s)	435, 892
Bso31I	GGTCTC	2 cut(s)	343, 388
Bsp1286I	GDGCHC	2 cut(s)	416, 808
Bsp143I	GATC	4 cut(s)	698, 853, 969, 982
BspACI	CCGC	4 cut(s)	297, 436, 471, 809
BspANI	GGCC	2 cut(s)	435, 892
BspCNI	CTCAG	4 cut(s)	235, 419, 461, 908
BspLI	GGNNCC	3 cut(s)	72, 415, 578
BspMAI	CTGCAG	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	706, 964
BspTNI	GGTCTC	2 cut(s)	343, 388
BsrBI	CCGCTC	1 cut(s)	811
BsrDI	GCAATG	2 cut(s)	207, 723
BsrI	ACTGG	4 cut(s)	490, 538, 613, 762
BssECI	CCNNGG	2 cut(s)	12, 353
BssMI	GATC	4 cut(s)	698, 853, 969, 982
BssNAI	GTATAC	1 cut(s)	709
BssNI	GRCGYC	1 cut(s)	155
BssSI	CACGAG	2 cut(s)	916, 1050
Bst1107I	GTATAC	1 cut(s)	709
Bst2BI	CACGAG	2 cut(s)	916, 1050
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	7 cut(s)	83, 111, 240, 526, 778, 1037, 1091
Bst6I	CTCTTC	3 cut(s)	12, 335, 864
BstACI	GRCGYC	1 cut(s)	155
BstDEI	CTNAG	9 cut(s)	56, 243, 333, 406, 420, 448, 621, 895, 1102
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	507, 994
BstKTI	GATC	4 cut(s)	701, 856, 972, 985
BstMAI	GTCTC	3 cut(s)	234, 343, 388
BstMBI	GATC	4 cut(s)	698, 853, 969, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 444, 611
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	353
BstSFI	CTRYAG	2 cut(s)	194, 648
BstV1I	GCAGC	3 cut(s)	460, 631, 805
BstV2I	GAAGAC	3 cut(s)	95, 180, 1089
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstZ17I	GTATAC	1 cut(s)	709
BsuI	GTATCC	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	435, 892
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	2 cut(s)	151, 241
BtsCI	GGATG	2 cut(s)	507, 994
BtsI	GCAGTG	2 cut(s)	67, 525
BtsIMutI	CAGTG	2 cut(s)	67, 525
BveI	ACCTGC	1 cut(s)	302
CaiI	CAGNNNCTG	1 cut(s)	524
Cfr13I	GGNCC	3 cut(s)	541, 577, 891
Csp6I	GTAC	1 cut(s)	1092
CviAII	CATG	3 cut(s)	565, 713, 742
CviQI	GTAC	1 cut(s)	1092
DdeI	CTNAG	9 cut(s)	56, 243, 333, 406, 420, 448, 621, 895, 1102
DpnI	GATC	4 cut(s)	700, 855, 971, 984
DpnII	GATC	4 cut(s)	698, 853, 969, 982
Eam1104I	CTCTTC	3 cut(s)	12, 335, 864
EarI	CTCTTC	3 cut(s)	12, 335, 864
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	2 cut(s)	343, 388
Eco32I	GATATC	1 cut(s)	682
Eco47I	GGWCC	2 cut(s)	541, 577
Eco57I	CTGAAG	1 cut(s)	309
EcoO109I	RGGNCCY	2 cut(s)	541, 891
EcoRII	CCWGG	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	416
FaeI	CATG	3 cut(s)	568, 716, 745
FaqI	GGGAC	2 cut(s)	590, 1060
FatI	CATG	3 cut(s)	564, 712, 741
FauI	CCCGC	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	4 cut(s)	436, 474, 645, 819
FokI	GGATG	2 cut(s)	494, 1001
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	4 cut(s)	436, 474, 645, 819
FspBI	CTAG	1 cut(s)	935
GluI	GCNGC	4 cut(s)	436, 474, 645, 819
HaeIII	GGCC	2 cut(s)	435, 892
HapII	CCGG	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	568, 716, 745
HinfI	GANTC	7 cut(s)	35, 185, 227, 245, 823, 949, 1048
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	65, 86, 709
Hpy188I	TCNGA	8 cut(s)	115, 160, 244, 250, 307, 388, 409, 845
Hpy188III	TCNNGA	7 cut(s)	696, 767, 801, 857, 935, 986, 1040
Hpy8I	GTNNAC	3 cut(s)	65, 86, 709
Hpy99I	CGWCG	1 cut(s)	1014
HpyAV	CCTTC	2 cut(s)	287, 554
HpyCH4III	ACNGT	7 cut(s)	83, 111, 240, 526, 778, 1037, 1091
HpyCH4IV	ACGT	2 cut(s)	155, 1094
HpyCH4V	TGCA	7 cut(s)	196, 463, 529, 594, 716, 944, 956
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 444, 611
HpyF3I	CTNAG	9 cut(s)	56, 243, 333, 406, 420, 448, 621, 895, 1102
HpySE526I	ACGT	2 cut(s)	155, 1094
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	3 cut(s)	568, 716, 745
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	4 cut(s)	698, 853, 969, 982
LmnI	GCTCC	5 cut(s)	70, 419, 491, 803, 845
Lsp1109I	GCAGC	3 cut(s)	460, 631, 805
LweI	GCATC	2 cut(s)	911, 954
MaeI	CTAG	1 cut(s)	935
MaeII	ACGT	2 cut(s)	155, 1094
MaeIII	GTNAC	2 cut(s)	520, 922
MalI	GATC	4 cut(s)	700, 855, 971, 984
MbiI	CCGCTC	1 cut(s)	811
MboI	GATC	4 cut(s)	698, 853, 969, 982
MfeI	CAATTG	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	416, 808
MluCI	AATT	5 cut(s)	89, 358, 458, 588, 734
MlyI	GAGTC	5 cut(s)	194, 236, 254, 832, 1042
MmeI	TCCRAC	2 cut(s)	204, 426
MseI	TTAA	1 cut(s)	6
MspA1I	CMGCKG	3 cut(s)	287, 473, 929
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	355
MunI	CAATTG	1 cut(s)	89
Mva1269I	GAATGC	2 cut(s)	594, 883
MvaI	CCWGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	3 cut(s)	284, 444, 611
NdeII	GATC	4 cut(s)	698, 853, 969, 982
NlaIII	CATG	3 cut(s)	568, 716, 745
NlaIV	GGNNCC	3 cut(s)	72, 415, 578
NmuCI	GTSAC	1 cut(s)	520
PaqCI	CACCTGC	1 cut(s)	302
PctI	GAATGC	2 cut(s)	594, 883
PfeI	GAWTC	2 cut(s)	35, 949
PkrI	GCNGC	4 cut(s)	437, 475, 646, 820
PleI	GAGTC	5 cut(s)	193, 235, 253, 831, 1042
PpsI	GAGTC	5 cut(s)	193, 235, 253, 831, 1042
PpuMI	RGGWCCY	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	72, 415, 578
PspPI	GGNCC	3 cut(s)	541, 577, 891
PspPPI	RGGWCCY	1 cut(s)	541
PstI	CTGCAG	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	524
PvuII	CAGCTG	2 cut(s)	287, 929
RsaI	GTAC	1 cut(s)	1093
RsaNI	GTAC	1 cut(s)	1092
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	4 cut(s)	436, 474, 645, 819
Sau3AI	GATC	4 cut(s)	698, 853, 969, 982
Sau96I	GGNCC	3 cut(s)	541, 577, 891
SchI	GAGTC	5 cut(s)	194, 236, 254, 832, 1042
ScrFI	CCNGG	1 cut(s)	355
SduI	GDGCHC	2 cut(s)	416, 808
SfaNI	GCATC	2 cut(s)	911, 954
SfcI	CTRYAG	2 cut(s)	194, 648
SinI	GGWCC	2 cut(s)	541, 577
Sse9I	AATT	5 cut(s)	89, 358, 458, 588, 734
SsiI	CCGC	4 cut(s)	297, 436, 471, 809
SspMI	CTAG	1 cut(s)	935
StyD4I	CCNGG	1 cut(s)	353
TaaI	ACNGT	7 cut(s)	83, 111, 240, 526, 778, 1037, 1091
TaiI	ACGT	2 cut(s)	158, 1097
TaqI	TCGA	2 cut(s)	1009, 1039
TasI	AATT	5 cut(s)	89, 358, 458, 588, 734
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	35, 949
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	67, 525
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	3 cut(s)	473, 644, 818
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	6 cut(s)	288, 387, 495, 496, 539, 1005
TspRI	CASTG	2 cut(s)	67, 525
VpaK11BI	GGWCC	2 cut(s)	541, 577
XbaI	TCTAGA	1 cut(s)	934
XcmI	CCANNNNNNNNNTGG	2 cut(s)	133, 220
XmiI	GTMKAC	1 cut(s)	708
XspI	CTAG	1 cut(s)	935
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.