Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000376.1

Orthogroup ID

OG0007073

Physical Location & Seq

Genomic Coordinates Reverse (-)

160794 .. 165210

Gene Structure 4417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000376.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgaccgacggtgttgggttcgctggtttcatcagagaagaaggtgtagattttgtggttgccggagactcgccggaagttagcaagagatcgcaggaggtcggccggagactcgccagaagtcggccagaggtccgccagaacacagtaggtgggaagcaggttttggcctttggagttatttggtggtctattgctactgctctgactcctattgctgcgaaacttggattacctttcctacttgtggttcgcgctttcatggggattggtgagggcgtggctatgcctgcaatgaataatattctgtcaaaatggattccagtatcagaaagaagtagagcgttggctctggtttacagtgggatgtacattggatcagtcactggctttgcattttcaccatttttaatacatcaatttggatggccatcggtgttttactcctttggttctctggggacagtctggtttgctgtttggctaagtaaggcatacagttcacctgctgaggatcctgagctgagacctgaagagaagaagctaattcttgccggtaatgcttccaaggaacctgtaaaagtgattccttggggacaaattttgtccaaagcacctgtttgggcccttatcgtttctcacttttgtcacaactggggaacatttattcttcttacatggatgccaacatactataaccaagtgctgaagttcaatcttacagaatcggggcttttctgcgtcttgccctggcttacaatggcattctctgcaaaccttggggggtggatagcagacacacttgtgagtaggggtgtatcggtgacaagggttcgtaagattatgcagacaattgggtttcttggccctgctttcttccttactcagttgagccatgtcaattctcctgcaatggctgttctatgtatggcatgcagtcagggaactgatgccttctcgcaatctggtctatattcaaaccatcaagatattgctccacgatattctggaatattgcttggtatgtccaacactgctggagtactagcaggtgtcttaggaacggcatcaactggttacattttgcaacatggttcttgggatgatgtattcaaggtttcagtaggcctttatctggttggaactgttgtctggaatgttttctcaaccggcgagaagatcatcgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055035 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

396

Amino Acids

43.07

Weight (kDa)

8.97

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29650 AT2G29650 AT2G29650 AT2G29650
fragaria_vesca	FvH4_3g38280 FvH4_3g38280
malus_domestica	MD01G1081800.v1.1 MD03G1073500.v1.1 MD11G1079500.v1.1
prunus_persica	Prupe.6G060100_v2.0.a1 Prupe.6G060100_v2.0.a1
pyrus_communis	pycom03g05940 pycom11g06700
rosa_chinensis	RchiOBHm_Chr5g0068811
rosa_laevigata	RLG00000036010
rosa_multiflora	Rmu_sc0000376.1_g000038 Rmu_ssc0000427.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012030
rosa_rugosa	Rorug05G0393200 Rorug05G0393300
rosa_samantha	Rh5AG450700 Rh5BG469200 Rh5CG491400 Rh5DG482500
rosa_wichuraiana	Rw5G042070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	514, 1040
Acc36I	ACCTGC	3 cut(s)	151, 514, 1040
AccII	CGCG	1 cut(s)	255
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	3 cut(s)	385, 509, 522
AcoI	YGGCCR	3 cut(s)	103, 125, 428
AcsI	RAATTY	1 cut(s)	600
AcuI	CTGAAG	2 cut(s)	552, 728
AfaI	GTAC	2 cut(s)	371, 1044
AfiI	CCNNNNNNNGG	3 cut(s)	123, 247, 1135
AgsI	TTSAA	3 cut(s)	715, 978, 1114
AjnI	CCWGG	1 cut(s)	749
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AleI	CACNNNNGTG	1 cut(s)	803
AluBI	AGCT	2 cut(s)	523, 544
AluI	AGCT	2 cut(s)	523, 544
Alw26I	GTCTC	3 cut(s)	60, 103, 520
AlwI	GGATC	3 cut(s)	385, 509, 522
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	7 cut(s)	103, 125, 168, 428, 624, 865, 1126
ApaI	GGGCCC	1 cut(s)	628
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	1160
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	4 cut(s)	133, 624, 625, 866
AsuHPI	GGTGA	4 cut(s)	284, 393, 495, 835
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	430
BamHI	GGATCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	628
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	3 cut(s)	420, 439, 990
BceAI	ACGGC	1 cut(s)	1080
BciT130I	CCWGG	1 cut(s)	751
BcoDI	GTCTC	3 cut(s)	60, 103, 520
BfaI	CTAG	1 cut(s)	1046
BfuAI	ACCTGC	3 cut(s)	151, 514, 1040
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BmcAI	AGTACT	1 cut(s)	1044
Bme1390I	CCNGG	1 cut(s)	751
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	4 cut(s)	133, 624, 625, 866
BmiI	GGNNCC	3 cut(s)	516, 573, 626
BmrFI	CCNGG	1 cut(s)	751
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	3 cut(s)	672, 940, 1076
BmuI	ACTGGG	1 cut(s)	664
BpmI	CTGGAG	1 cut(s)	1059
Bpu10I	CCTNAGC	2 cut(s)	510, 519
Bsa29I	ATCGAT	1 cut(s)	1185
BsaBI	GATNNNNATC	1 cut(s)	430
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	4 cut(s)	567, 590, 749, 778
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 247, 1135
Bse118I	RCCGGY	2 cut(s)	554, 1169
Bse1I	ACTGG	4 cut(s)	323, 391, 659, 1078
Bse3DI	GCAATG	2 cut(s)	300, 918
Bse8I	GATNNNNATC	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	751
BseCI	ATCGAT	1 cut(s)	1185
BseDI	CCNNGG	4 cut(s)	567, 590, 749, 778
BseGI	GGATG	4 cut(s)	372, 431, 687, 1108
BseJI	GATNNNNATC	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	123, 247, 1135
BseMI	GCAATG	2 cut(s)	300, 918
BseMII	CTCAG	4 cut(s)	501, 510, 515, 899
BseNI	ACTGG	4 cut(s)	323, 391, 659, 1078
BseSI	GKGCMC	1 cut(s)	628
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	7 cut(s)	105, 127, 170, 430, 626, 867, 1128
BshVI	ATCGAT	1 cut(s)	1185
BsiEI	CGRYCG	1 cut(s)	106
BsiSI	CCGG	5 cut(s)	63, 74, 106, 555, 1170
BslFI	GGGAC	2 cut(s)	475, 609
BslI	CCNNNNNNNGG	3 cut(s)	123, 247, 1135
BsmAI	GTCTC	3 cut(s)	60, 103, 520
BsmFI	GGGAC	2 cut(s)	475, 609
BsmI	GAATGC	1 cut(s)	764
BsnI	GGCC	7 cut(s)	105, 127, 170, 430, 626, 867, 1128
Bso31I	GGTCTC	1 cut(s)	520
Bsp120I	GGGCCC	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	89, 377, 514, 1179
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	7 cut(s)	105, 127, 170, 430, 626, 867, 1128
BspCNI	CTCAG	4 cut(s)	502, 511, 516, 898
BspDI	ATCGAT	1 cut(s)	1185
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	516, 573, 626
BspMI	ACCTGC	3 cut(s)	151, 514, 1040
BspPI	GGATC	3 cut(s)	385, 509, 522
BspTNI	GGTCTC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	300, 918
BsrFI	RCCGGY	2 cut(s)	554, 1169
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	4 cut(s)	323, 391, 659, 1078
BssAI	RCCGGY	2 cut(s)	554, 1169
BssECI	CCNNGG	4 cut(s)	567, 590, 749, 778
BssMI	GATC	4 cut(s)	89, 377, 514, 1179
BssT1I	CCWWGG	3 cut(s)	567, 590, 778
Bst2UI	CCWGG	1 cut(s)	751
Bst4CI	ACNGT	6 cut(s)	11, 148, 362, 466, 500, 1147
Bst6I	CTCTTC	1 cut(s)	528
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	291, 934
BstDEI	CTNAG	6 cut(s)	485, 510, 519, 524, 885, 1057
BstF5I	GGATG	4 cut(s)	372, 431, 687, 1108
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	4 cut(s)	92, 380, 517, 1182
BstMAI	GTCTC	3 cut(s)	60, 103, 520
BstMBI	GATC	4 cut(s)	89, 377, 514, 1179
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 560, 770
BstNI	CCWGG	1 cut(s)	751
BstNSI	RCATGY	1 cut(s)	936
BstSCI	CCNGG	1 cut(s)	749
BstSLI	GKGCMC	1 cut(s)	628
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BstZI	CGGCCG	1 cut(s)	103
Bsu15I	ATCGAT	1 cut(s)	1185
BsuRI	GGCC	7 cut(s)	105, 127, 170, 430, 626, 867, 1128
BsuTUI	ATCGAT	1 cut(s)	1185
BtsCI	GGATG	4 cut(s)	372, 431, 687, 1108
BtsI	GCAGTG	1 cut(s)	1032
BtsIMutI	CAGTG	3 cut(s)	367, 384, 1032
BveI	ACCTGC	3 cut(s)	151, 514, 1040
Cac8I	GCNNGC	2 cut(s)	291, 934
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	1 cut(s)	257
Cfr10I	RCCGGY	2 cut(s)	554, 1169
Cfr13I	GGNCC	4 cut(s)	133, 624, 625, 866
ClaI	ATCGAT	1 cut(s)	1185
CseI	GACGC	1 cut(s)	730
Csp6I	GTAC	2 cut(s)	370, 1043
CviAII	CATG	5 cut(s)	262, 678, 896, 933, 1091
CviQI	GTAC	2 cut(s)	370, 1043
DdeI	CTNAG	6 cut(s)	485, 510, 519, 524, 885, 1057
DpnI	GATC	4 cut(s)	91, 379, 516, 1181
DpnII	GATC	4 cut(s)	89, 377, 514, 1179
EaeI	YGGCCR	3 cut(s)	103, 125, 428
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
EciI	GGCGGA	1 cut(s)	125
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	3 cut(s)	567, 590, 778
Eco147I	AGGCCT	1 cut(s)	1128
Eco24I	GRGCYC	1 cut(s)	628
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	133
Eco52I	CGGCCG	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	552, 728
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	749
EcoT14I	CCWWGG	3 cut(s)	567, 590, 778
EcoT38I	GRGCYC	1 cut(s)	628
ErhI	CCWWGG	3 cut(s)	567, 590, 778
FaeI	CATG	5 cut(s)	265, 681, 899, 936, 1094
FaqI	GGGAC	2 cut(s)	475, 609
FatI	CATG	5 cut(s)	261, 677, 895, 932, 1090
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	4 cut(s)	379, 438, 694, 1115
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	1046
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	1059
HaeIII	GGCC	7 cut(s)	105, 127, 170, 430, 626, 867, 1128
HapII	CCGG	5 cut(s)	63, 74, 106, 555, 1170
HgaI	GACGC	1 cut(s)	730
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	5 cut(s)	265, 681, 899, 936, 1094
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	6 cut(s)	68, 111, 208, 319, 586, 725
HpaII	CCGG	5 cut(s)	63, 74, 106, 555, 1170
HphI	GGTGA	4 cut(s)	284, 393, 495, 835
Hpy166II	GTNNAC	2 cut(s)	358, 503
Hpy188I	TCNGA	3 cut(s)	35, 207, 331
Hpy188III	TCNNGA	4 cut(s)	518, 986, 1008, 1153
Hpy8I	GTNNAC	2 cut(s)	358, 503
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	35, 964
HpyCH4III	ACNGT	6 cut(s)	11, 148, 362, 466, 500, 1147
HpyCH4V	TGCA	7 cut(s)	293, 395, 773, 847, 911, 936, 1087
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 560, 770
HpyF3I	CTNAG	6 cut(s)	485, 510, 519, 524, 885, 1057
Hsp92II	CATG	5 cut(s)	265, 681, 899, 936, 1094
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	89, 377, 514, 1179
LmnI	GCTCC	1 cut(s)	1000
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	3 cut(s)	672, 940, 1076
MaeI	CTAG	1 cut(s)	1046
MaeIII	GTNAC	4 cut(s)	382, 647, 823, 1076
MalI	GATC	4 cut(s)	91, 379, 516, 1181
MboI	GATC	4 cut(s)	89, 377, 514, 1179
MboII	GAAGA	6 cut(s)	50, 545, 550, 662, 868, 1189
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	5 cut(s)	419, 546, 600, 852, 901
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	3 cut(s)	62, 105, 202
MmeI	TCCRAC	2 cut(s)	1053, 1120
MnlI	CCTC	4 cut(s)	91, 124, 268, 505
Mox20I	TGGCCA	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	1160
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	803
Msp20I	TGGCCA	1 cut(s)	430
MspI	CCGG	5 cut(s)	63, 74, 106, 555, 1170
MspR9I	CCNGG	1 cut(s)	751
MunI	CAATTG	1 cut(s)	852
Mva1269I	GAATGC	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	751
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	290, 560, 770
NdeII	GATC	4 cut(s)	89, 377, 514, 1179
NlaIII	CATG	5 cut(s)	265, 681, 899, 936, 1094
NlaIV	GGNNCC	3 cut(s)	516, 573, 626
NmuCI	GTSAC	3 cut(s)	382, 647, 823
NspI	RCATGY	1 cut(s)	936
OliI	CACNNNNGTG	1 cut(s)	803
PaeI	GCATGC	1 cut(s)	936
PaqCI	CACCTGC	2 cut(s)	514, 1040
PceI	AGGCCT	1 cut(s)	1128
PctI	GAATGC	1 cut(s)	764
PdmI	GAANNNNTTC	1 cut(s)	1160
PfeI	GAWTC	3 cut(s)	319, 586, 725
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	3 cut(s)	62, 105, 202
PpsI	GAGTC	3 cut(s)	62, 105, 202
Psp6I	CCWGG	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	749
PspN4I	GGNNCC	3 cut(s)	516, 573, 626
PspOMI	GGGCCC	1 cut(s)	624
PspPI	GGNCC	4 cut(s)	133, 624, 625, 866
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	2 cut(s)	371, 1044
RsaNI	GTAC	2 cut(s)	370, 1043
RseI	CAYNNNNRTG	1 cut(s)	803
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	4 cut(s)	89, 377, 514, 1179
Sau96I	GGNCC	4 cut(s)	133, 624, 625, 866
ScaI	AGTACT	1 cut(s)	1044
SchI	GAGTC	3 cut(s)	62, 105, 202
ScrFI	CCNGG	1 cut(s)	751
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	3 cut(s)	672, 940, 1076
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	803
SphI	GCATGC	1 cut(s)	936
Sse9I	AATT	5 cut(s)	419, 546, 600, 852, 901
SseBI	AGGCCT	1 cut(s)	1128
SsiI	CCGC	1 cut(s)	136
SspI	AATATT	2 cut(s)	304, 1014
SspMI	CTAG	1 cut(s)	1046
StuI	AGGCCT	1 cut(s)	1128
StyD4I	CCNGG	1 cut(s)	749
StyI	CCWWGG	3 cut(s)	567, 590, 778
TaaI	ACNGT	6 cut(s)	11, 148, 362, 466, 500, 1147
TaqI	TCGA	1 cut(s)	1185
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	419, 546, 600, 852, 901
TatI	WGTACW	2 cut(s)	369, 1042
TfiI	GAWTC	3 cut(s)	319, 586, 725
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	3 cut(s)	367, 391, 1039
TseFI	GTSAC	3 cut(s)	382, 647, 823
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	3 cut(s)	382, 647, 823
TspDTI	ATGAA	3 cut(s)	19, 250, 311
TspRI	CASTG	3 cut(s)	367, 391, 1039
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	600
XceI	RCATGY	1 cut(s)	936
XmnI	GAANNNNTTC	1 cut(s)	1160
XspI	CTAG	1 cut(s)	1046
ZrmI	AGTACT	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.