Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007073

Physical Location & Seq

Genomic Coordinates Reverse (-)

74717577 .. 74721846

Gene Structure 4270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG469200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGACCGCCAGAGCTCTTTGCTACTCCTTCTCTCCCAAACCAAACGTCCCGCTCGATATCTCTATCCCCAAGAGAAGTCTCGGCTCCGGTTTCAGACCCGTAAGCCCGGTTCGGTTCCGGGTACGGGTCCAGAACCGGGGGCAGTACTGCTGCGTCGTGCGAGTTTCGGGAGGCGGTGAGAGGAGAGGCGGGAAAGTGTTTGCGGATGTTAAATCGGAGCCGTATGAGTTATCGAAGACGGTGAAGGAGGAGTTGGAGTCTGTGGCTGATGAGGTTTCGTGGTTGGAGCAGTTTCCGAAACGATGGATTATTGTCATTTTGTGCTTCTCGGCTTTTCTTCTTTGCAATATGGACAGAGTAAATATGAGCATTGCTATACTTCCCATGTCAGCAGAGTACAACTGGAACTCAGCAACTGTGGGTTTGATACAGTCTTCTTTTTTCTGGGGCTACCTCCTCACTCAGATTGCTGGTGGCATTTTGGCAGACACAGTAGGTGGGAAGCAGGTTTTGGCCTTTGGAGTTATTTGGTGGTCTATTGCTACTGCTCTGACTCCTATTGCTGCGAAACTTGGATTACCTTTCCTACTTGTGGTTCGCGCTTTCATGGGGATTGGTGAGGGCGTGGCTATGCCTGCAATGAATAATATTCTGTCAAAATGGATTCCAGTATCAGAAAGAAGTAGAGCGTTGGCTCTGGTTTACAGTGGGATGTACATTGGATCAGTCACTGGCTTTGCATTTTCACCATTTTTAATACATCAATTTGGATGGCCATCGGTGTTTTACTCCTTTGGTTCTCTGGGGACAGTCTGGTTTGCTGTTTGGCTAAGTAAGGCATACAGTTCACCTGCTGAGGATCCTGAGCTGAGACCTGAAGAGAAGAAGCTAATTCTTGCCGGTAATGCTTCCAAGGAACCTGTAAAAGTGATTCCTTGGGGACAAATTTTGTCCAAAGCACCTGTTTGGGCCCTTATCGTTTCTCACTTTTGTCACAACTGGGGAACATTTATTCTTCTTACATGGATGCCAACATACTATAACCAATGTATCAAACCTGAAATTGCTTGTGTTTTGCTGATTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055035 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

362

Amino Acids

40.17

Weight (kDa)

9.22

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	108 - 347	1.4e-47	Major Facilitator Superfamily
MFS_3	PF05977	113 - 276	9.7e-06	Transmembrane secretion effector
Sugar_tr	PF00083	136 - 263	5.1e-07	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29650 AT2G29650 AT2G29650 AT2G29650
fragaria_vesca	FvH4_3g38280 FvH4_3g38280
malus_domestica	MD01G1081800.v1.1 MD03G1073500.v1.1 MD11G1079500.v1.1
prunus_persica	Prupe.6G060100_v2.0.a1 Prupe.6G060100_v2.0.a1
pyrus_communis	pycom03g05940 pycom11g06700
rosa_chinensis	RchiOBHm_Chr5g0068811
rosa_laevigata	RLG00000036010
rosa_multiflora	Rmu_sc0000376.1_g000038 Rmu_ssc0000427.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012030
rosa_rugosa	Rorug05G0393200 Rorug05G0393300
rosa_samantha	Rh5AG450700 Rh5BG469200 Rh5CG491400 Rh5DG482500
rosa_wichuraiana	Rw5G042070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1087
AarI	CACCTGC	1 cut(s)	859
Acc36I	ACCTGC	2 cut(s)	496, 859
AccBSI	CCGCTC	1 cut(s)	52
AccII	CGCG	1 cut(s)	600
AciI	CCGC	5 cut(s)	6, 50, 174, 189, 203
AclWI	GGATC	3 cut(s)	730, 854, 867
AcoI	YGGCCR	1 cut(s)	773
AcsI	RAATTY	1 cut(s)	945
AcuI	CTGAAG	1 cut(s)	897
AfaI	GTAC	4 cut(s)	123, 146, 398, 716
AfiI	CCNNNNNNNGG	3 cut(s)	124, 136, 592
AjuI	GAANNNNNNNTTGG	4 cut(s)	236, 268, 494, 526
AluBI	AGCT	3 cut(s)	14, 868, 889
AluI	AGCT	3 cut(s)	14, 868, 889
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	83, 865
AlwI	GGATC	3 cut(s)	730, 854, 867
AlwNI	CAGNNNCTG	2 cut(s)	416, 731
AoxI	GGCC	3 cut(s)	513, 773, 969
ApaI	GGGCCC	1 cut(s)	973
ApeKI	GCWGC	2 cut(s)	150, 563
ApoI	RAATTY	1 cut(s)	945
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspLEI	GCGC	1 cut(s)	602
AspS9I	GGNCC	3 cut(s)	127, 969, 970
AsuC2I	CCSGG	3 cut(s)	107, 119, 137
AsuHPI	GGTGA	5 cut(s)	188, 253, 629, 738, 840
AvaII	GGWCC	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	973
BaeI	ACNNNNGTAYC	2 cut(s)	1033, 1066
BalI	TGGCCA	1 cut(s)	775
BamHI	GGATCC	1 cut(s)	859
BanII	GRGCYC	2 cut(s)	16, 973
BbsI	GAAGAC	2 cut(s)	242, 426
Bbv12I	GWGCWC	1 cut(s)	16
BbvCI	CCTCAGC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	137, 550
BccI	CCATC	3 cut(s)	297, 765, 784
BceAI	ACGGC	1 cut(s)	205
BcnI	CCSGG	3 cut(s)	107, 119, 137
BcoDI	GTCTC	2 cut(s)	83, 865
BfuAI	ACCTGC	2 cut(s)	496, 859
BisI	GCNGC	2 cut(s)	151, 564
BlsI	GCNGC	2 cut(s)	152, 565
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	3 cut(s)	107, 119, 137
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	127, 969, 970
BmiI	GGNNCC	7 cut(s)	85, 116, 128, 219, 861, 918, 971
BmrFI	CCNGG	3 cut(s)	107, 119, 137
BmrI	ACTGGG	1 cut(s)	1009
BmsI	GCATC	1 cut(s)	1017
BmuI	ACTGGG	1 cut(s)	1009
BpiI	GAAGAC	2 cut(s)	242, 426
Bpu10I	CCTNAGC	2 cut(s)	855, 864
BpuMI	CCSGG	3 cut(s)	107, 119, 137
BsaBI	GATNNNNATC	1 cut(s)	775
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	3 cut(s)	136, 912, 935
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 136, 592
Bse118I	RCCGGY	1 cut(s)	899
Bse1I	ACTGG	4 cut(s)	407, 668, 736, 1004
Bse3DI	GCAATG	2 cut(s)	369, 645
Bse8I	GATNNNNATC	1 cut(s)	775
BseDI	CCNNGG	3 cut(s)	136, 912, 935
BseGI	GGATG	4 cut(s)	211, 717, 776, 1032
BseJI	GATNNNNATC	1 cut(s)	775
BseLI	CCNNNNNNNGG	3 cut(s)	124, 136, 592
BseMI	GCAATG	2 cut(s)	369, 645
BseMII	CTCAG	5 cut(s)	423, 476, 846, 855, 860
BseNI	ACTGG	4 cut(s)	407, 668, 736, 1004
BseRI	GAGGAG	3 cut(s)	196, 263, 446
BseSI	GKGCMC	1 cut(s)	973
BseXI	GCAGC	2 cut(s)	137, 550
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	515, 775, 971
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	5 cut(s)	87, 107, 118, 136, 900
BslFI	GGGAC	3 cut(s)	32, 820, 954
BslI	CCNNNNNNNGG	3 cut(s)	124, 136, 592
BsmAI	GTCTC	2 cut(s)	83, 865
BsmFI	GGGAC	3 cut(s)	32, 820, 954
BsnI	GGCC	3 cut(s)	515, 775, 971
Bso31I	GGTCTC	1 cut(s)	865
Bsp120I	GGGCCC	1 cut(s)	969
Bsp1286I	GDGCHC	2 cut(s)	16, 973
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	2 cut(s)	722, 859
BspACI	CCGC	5 cut(s)	6, 50, 174, 189, 203
BspANI	GGCC	3 cut(s)	515, 775, 971
BspCNI	CTCAG	5 cut(s)	422, 475, 847, 856, 861
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	7 cut(s)	85, 116, 128, 219, 861, 918, 971
BspMI	ACCTGC	2 cut(s)	496, 859
BspPI	GGATC	3 cut(s)	730, 854, 867
BspTNI	GGTCTC	1 cut(s)	865
BsrBI	CCGCTC	1 cut(s)	52
BsrDI	GCAATG	2 cut(s)	369, 645
BsrFI	RCCGGY	1 cut(s)	899
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	4 cut(s)	407, 668, 736, 1004
BssAI	RCCGGY	1 cut(s)	899
BssECI	CCNNGG	3 cut(s)	136, 912, 935
BssMI	GATC	2 cut(s)	722, 859
BssT1I	CCWWGG	2 cut(s)	912, 935
Bst4CI	ACNGT	7 cut(s)	241, 418, 432, 493, 707, 811, 845
Bst6I	CTCTTC	1 cut(s)	873
BstAUI	TGTACA	1 cut(s)	714
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	6 cut(s)	409, 462, 830, 855, 864, 869
BstF5I	GGATG	4 cut(s)	211, 717, 776, 1032
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	602
BstKTI	GATC	2 cut(s)	725, 862
BstMAI	GTCTC	2 cut(s)	83, 865
BstMBI	GATC	2 cut(s)	722, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	635, 905
BstSCI	CCNGG	3 cut(s)	105, 117, 135
BstSLI	GKGCMC	1 cut(s)	973
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	137, 550
BstV2I	GAAGAC	2 cut(s)	242, 426
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BsuRI	GGCC	3 cut(s)	515, 775, 971
BtsCI	GGATG	4 cut(s)	211, 717, 776, 1032
BtsIMutI	CAGTG	2 cut(s)	712, 729
BveI	ACCTGC	2 cut(s)	496, 859
Cac8I	GCNNGC	1 cut(s)	636
CaiI	CAGNNNCTG	2 cut(s)	416, 731
CfoI	GCGC	1 cut(s)	602
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	3 cut(s)	127, 969, 970
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	4 cut(s)	122, 145, 397, 715
CviAII	CATG	3 cut(s)	385, 607, 1023
CviQI	GTAC	4 cut(s)	122, 145, 397, 715
DdeI	CTNAG	6 cut(s)	409, 462, 830, 855, 864, 869
DpnI	GATC	2 cut(s)	724, 861
DpnII	GATC	2 cut(s)	722, 859
EaeI	YGGCCR	1 cut(s)	773
Eam1104I	CTCTTC	1 cut(s)	873
EarI	CTCTTC	1 cut(s)	873
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	912, 935
Eco24I	GRGCYC	2 cut(s)	16, 973
Eco31I	GGTCTC	1 cut(s)	865
Eco32I	GATATC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	897
EcoICRI	GAGCTC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	970
EcoRV	GATATC	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	912, 935
EcoT38I	GRGCYC	2 cut(s)	16, 973
ErhI	CCWWGG	2 cut(s)	912, 935
FaeI	CATG	3 cut(s)	388, 610, 1026
FaqI	GGGAC	3 cut(s)	32, 820, 954
FatI	CATG	3 cut(s)	384, 606, 1022
FauI	CCCGC	2 cut(s)	57, 182
Fnu4HI	GCNGC	2 cut(s)	151, 564
FokI	GGATG	4 cut(s)	218, 724, 783, 1039
FriOI	GRGCYC	2 cut(s)	16, 973
Fsp4HI	GCNGC	2 cut(s)	151, 564
GlaI	GCGC	1 cut(s)	601
GluI	GCNGC	2 cut(s)	151, 564
HaeIII	GGCC	3 cut(s)	515, 775, 971
HapII	CCGG	5 cut(s)	87, 107, 118, 136, 900
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	602
Hin1II	CATG	3 cut(s)	388, 610, 1026
Hin6I	GCGC	1 cut(s)	600
HinP1I	GCGC	1 cut(s)	600
HinfI	GANTC	4 cut(s)	257, 553, 664, 931
HpaII	CCGG	5 cut(s)	87, 107, 118, 136, 900
HphI	GGTGA	5 cut(s)	188, 253, 629, 738, 840
Hpy166II	GTNNAC	2 cut(s)	703, 848
Hpy188I	TCNGA	6 cut(s)	95, 217, 297, 465, 552, 676
Hpy188III	TCNNGA	3 cut(s)	130, 168, 863
Hpy8I	GTNNAC	2 cut(s)	703, 848
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	2 cut(s)	37, 238
HpyCH4III	ACNGT	7 cut(s)	241, 418, 432, 493, 707, 811, 845
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	345, 638, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	635, 905
HpyF3I	CTNAG	6 cut(s)	409, 462, 830, 855, 864, 869
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	388, 610, 1026
HspAI	GCGC	1 cut(s)	600
Kzo9I	GATC	2 cut(s)	722, 859
LmnI	GCTCC	3 cut(s)	89, 217, 286
Lsp1109I	GCAGC	2 cut(s)	137, 550
LweI	GCATC	1 cut(s)	1017
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	727, 992
MalI	GATC	2 cut(s)	724, 861
MbiI	CCGCTC	1 cut(s)	52
MboI	GATC	2 cut(s)	722, 859
MboII	GAAGA	6 cut(s)	247, 329, 426, 890, 895, 1007
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	2 cut(s)	16, 973
MlsI	TGGCCA	1 cut(s)	775
MluCI	AATT	4 cut(s)	764, 891, 945, 1062
MluNI	TGGCCA	1 cut(s)	775
MlyI	GAGTC	2 cut(s)	266, 547
MmeI	TCCRAC	2 cut(s)	234, 264
MnlI	CCTC	9 cut(s)	164, 174, 179, 241, 265, 464, 467, 613, 850
Mox20I	TGGCCA	1 cut(s)	775
MscI	TGGCCA	1 cut(s)	775
MseI	TTAA	2 cut(s)	210, 755
Msp20I	TGGCCA	1 cut(s)	775
MspI	CCGG	5 cut(s)	87, 107, 118, 136, 900
MspR9I	CCNGG	3 cut(s)	107, 119, 137
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	635, 905
NciI	CCSGG	3 cut(s)	107, 119, 137
NdeII	GATC	2 cut(s)	722, 859
NlaIII	CATG	3 cut(s)	388, 610, 1026
NlaIV	GGNNCC	7 cut(s)	85, 116, 128, 219, 861, 918, 971
NmeAIII	GCCGAG	2 cut(s)	60, 308
NmuCI	GTSAC	2 cut(s)	727, 992
PaqCI	CACCTGC	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	664, 931
PkrI	GCNGC	2 cut(s)	152, 565
PleI	GAGTC	2 cut(s)	265, 547
PpsI	GAGTC	2 cut(s)	265, 547
PsiI	TTATAA	1 cut(s)	1087
Psp124BI	GAGCTC	1 cut(s)	16
PspN4I	GGNNCC	7 cut(s)	85, 116, 128, 219, 861, 918, 971
PspOMI	GGGCCC	1 cut(s)	969
PspPI	GGNCC	3 cut(s)	127, 969, 970
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
PstNI	CAGNNNCTG	2 cut(s)	416, 731
PsuI	RGATCY	1 cut(s)	859
RsaI	GTAC	4 cut(s)	123, 146, 398, 716
RsaNI	GTAC	4 cut(s)	122, 145, 397, 715
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	210, 755
SatI	GCNGC	2 cut(s)	151, 564
Sau3AI	GATC	2 cut(s)	722, 859
Sau96I	GGNCC	3 cut(s)	127, 969, 970
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	2 cut(s)	266, 547
ScrFI	CCNGG	3 cut(s)	107, 119, 137
SduI	GDGCHC	2 cut(s)	16, 973
SfaNI	GCATC	1 cut(s)	1017
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	4 cut(s)	764, 891, 945, 1062
SsiI	CCGC	5 cut(s)	6, 50, 174, 189, 203
SspI	AATATT	1 cut(s)	649
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	3 cut(s)	105, 117, 135
StyI	CCWWGG	2 cut(s)	912, 935
TaaI	ACNGT	7 cut(s)	241, 418, 432, 493, 707, 811, 845
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	54, 233
TasI	AATT	4 cut(s)	764, 891, 945, 1062
TatI	WGTACW	3 cut(s)	144, 396, 714
TfiI	GAWTC	2 cut(s)	664, 931
Tru1I	TTAA	2 cut(s)	210, 755
Tru9I	TTAA	2 cut(s)	210, 755
TscAI	CASTG	2 cut(s)	712, 736
TseFI	GTSAC	2 cut(s)	727, 992
TseI	GCWGC	2 cut(s)	150, 563
Tsp45I	GTSAC	2 cut(s)	727, 992
TspDTI	ATGAA	2 cut(s)	595, 656
TspRI	CASTG	2 cut(s)	712, 736
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	945
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.