Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0019689

Physical Location & Seq

Genomic Coordinates Reverse (-)

33268398 .. 33270101

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCATCAAGATCACAGATGGTGCGTTGCCTTGGGTGCTCCCAGCTTTGGATCCCCGTACGCCAATATTTGCATCATCCTTCACCATGGAGATTGATGAGTCACCACTTGATGATCAAGGTTTTGATAGTGAAGGTTTGGATGAACTTTCAAAAGGAGTAACACTGGAAGGACAACAAGTGTATCCACTATCCTCAGTGGCAGATGCACTGTTGAGGCATATTTCAGCAACTCAAGTGAGGTTTATTACTACCCAGTTTGCTTCAAACATACATCAACTTGGAAGTGTGAAAGCTGCTGCTGATGCTATTGGTAGAAAGTTGGTAGTTGTCGGATTCGCTAATCGTCACAACTGGCTCTCAAGCAGAACCACTTGCGGCTCTAAATCTTGCATCATTTGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008409 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009914 GO:0009942 GO:0009987 GO:0010154 GO:0010817 GO:0016043 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2 Myb_DNA-bind_4 RMMBL

Protein Analysis

136

Amino Acids

14.65

Weight (kDa)

5.85

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39050 FvH4_5g07980 FvH4_5g07980
pyrus_communis	pycom16g04190
rosa_chinensis	RchiOBHm_Chr2g0134681
rosa_roxburghii	Rroxscaffold_2G00102990 Rroxscaffold_7G00192900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	2 cut(s)	47, 60
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	153, 267
AluBI	AGCT	2 cut(s)	47, 296
AluI	AGCT	2 cut(s)	47, 296
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	47, 60
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	296, 299
AsuHPI	GGTGA	2 cut(s)	76, 96
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	283, 286
BccI	CCATC	2 cut(s)	14, 14
BciVI	GTATCC	1 cut(s)	195
BclI	TGATCA	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	195
BisI	GCNGC	3 cut(s)	297, 300, 379
BlsI	GCNGC	3 cut(s)	298, 301, 380
BmiI	GGNNCC	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	4 cut(s)	83, 196, 295, 402
BmuI	ACTGGG	1 cut(s)	250
BpuEI	CTTGAG	2 cut(s)	219, 346
BsaJI	CCNNGG	2 cut(s)	32, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	3 cut(s)	171, 256, 359
BseDI	CCNNGG	2 cut(s)	32, 87
BseGI	GGATG	2 cut(s)	77, 148
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	3 cut(s)	171, 256, 359
BseXI	GCAGC	2 cut(s)	283, 286
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	42
BsiWI	CGTACG	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	12, 52, 115
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	2 cut(s)	47, 60
BsrI	ACTGG	3 cut(s)	171, 256, 359
BssECI	CCNNGG	2 cut(s)	32, 87
BssMI	GATC	3 cut(s)	12, 52, 115
BssT1I	CCWWGG	2 cut(s)	32, 87
Bst4CI	ACNGT	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	77, 148
BstKTI	GATC	3 cut(s)	15, 55, 118
BstMBI	GATC	3 cut(s)	12, 52, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 305
BstV1I	GCAGC	2 cut(s)	283, 286
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	77, 148
BtsIMutI	CAGTG	3 cut(s)	164, 204, 209
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	5 cut(s)	5, 47, 296, 358, 381
CviKI_1	RGCY	5 cut(s)	5, 47, 296, 358, 381
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	3 cut(s)	14, 54, 117
DpnII	GATC	3 cut(s)	12, 52, 115
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	32, 87
EcoT14I	CCWWGG	2 cut(s)	32, 87
ErhI	CCWWGG	2 cut(s)	32, 87
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	89, 222, 272
FatI	CATG	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	297, 300, 379
FokI	GGATG	2 cut(s)	64, 155
Fsp4HI	GCNGC	3 cut(s)	297, 300, 379
GluI	GCNGC	3 cut(s)	297, 300, 379
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	2 cut(s)	101, 336
HphI	GGTGA	2 cut(s)	76, 96
Hpy188I	TCNGA	1 cut(s)	335
Hpy188III	TCNNGA	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	91, 128, 164
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	74, 209, 393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 305
HpyF3I	CTNAG	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	12, 52, 115
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	57, 152, 269, 340
Lsp1109I	GCAGC	2 cut(s)	283, 286
LweI	GCATC	4 cut(s)	83, 196, 295, 402
MaeIII	GTNAC	3 cut(s)	102, 160, 347
MalI	GATC	3 cut(s)	14, 54, 117
MboI	GATC	3 cut(s)	12, 52, 115
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	3 cut(s)	205, 210, 234
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	37, 305
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	12, 52, 115
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	102, 347
PfeI	GAWTC	1 cut(s)	336
Pfl23II	CGTACG	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	298, 301, 380
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	43
PspLI	CGTACG	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SatI	GCNGC	3 cut(s)	297, 300, 379
Sau3AI	GATC	3 cut(s)	12, 52, 115
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	5 cut(s)	49, 124, 139, 245, 298
SfaNI	GCATC	4 cut(s)	83, 196, 295, 402
SmlI	CTYRAG	2 cut(s)	234, 361
SmoI	CTYRAG	2 cut(s)	234, 361
SsiI	CCGC	1 cut(s)	378
SspI	AATATT	1 cut(s)	69
StyI	CCWWGG	2 cut(s)	32, 87
TaaI	ACNGT	1 cut(s)	213
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	336
TscAI	CASTG	3 cut(s)	171, 204, 216
TseFI	GTSAC	2 cut(s)	102, 347
TseI	GCWGC	2 cut(s)	296, 299
Tsp45I	GTSAC	2 cut(s)	102, 347
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	3 cut(s)	171, 204, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.