Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019689

Physical Location & Seq

Genomic Coordinates Forward (+)

25333050 .. 25333876

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCCGCCTACTCTACTCGAGATCGGTGTTGGAGCATCTCGAGGATCCGAAAACCTGAACTCAAGCTCGATCTTCCTCTCCGACCTCCGAAGCGCTTCCCTATTGGAGGACCTCGCCCGCCTCGGAGCTTACTCCGATCTCTTCGTTTTCATCACCGACGGCAAAGCCAATATCTTCTTCTGCAGTATCGCCACCATGGATTTAGTGATCCCAGCTTTGGATCCCAGTACACCAATATTTGCATCATCCTTCACCATGGAGTTACTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

90

Amino Acids

9.63

Weight (kDa)

4.12

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39050 FvH4_5g07980 FvH4_5g07980
pyrus_communis	pycom16g04190
rosa_chinensis	RchiOBHm_Chr2g0134681
rosa_roxburghii	Rroxscaffold_2G00102990 Rroxscaffold_7G00192900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 118
AclWI	GGATC	5 cut(s)	39, 52, 202, 215, 228
AfaI	GTAC	1 cut(s)	229
AfeI	AGCGCT	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	106, 217
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	3 cut(s)	66, 128, 215
AluI	AGCT	3 cut(s)	66, 128, 215
AlwI	GGATC	5 cut(s)	39, 52, 202, 215, 228
Ama87I	CYCGRG	2 cut(s)	17, 39
Aor51HI	AGCGCT	1 cut(s)	94
Asp700I	GAANNNNTTC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	145, 244
AvaI	CYCGRG	2 cut(s)	17, 39
AvaII	GGWCC	1 cut(s)	109
BamHI	GGATCC	2 cut(s)	44, 220
BceAI	ACGGC	1 cut(s)	175
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	2 cut(s)	17, 39
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	46, 222
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	44, 251
BmuI	ACTGGG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	121, 195, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 217
Bse1I	ACTGG	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	121, 195, 255
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	106, 217
BseNI	ACTGG	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	211
BsiHKCI	CYCGRG	2 cut(s)	17, 39
BslI	CCNNNNNNNGG	2 cut(s)	106, 217
BsoBI	CYCGRG	2 cut(s)	17, 39
Bsp143I	GATC	6 cut(s)	21, 44, 69, 136, 207, 220
Bsp19I	CCATGG	2 cut(s)	195, 255
BspACI	CCGC	2 cut(s)	5, 118
BspLI	GGNNCC	2 cut(s)	46, 222
BspMAI	CTGCAG	1 cut(s)	185
BspPI	GGATC	5 cut(s)	39, 52, 202, 215, 228
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	3 cut(s)	121, 195, 255
BssMI	GATC	6 cut(s)	21, 44, 69, 136, 207, 220
BssT1I	CCWWGG	2 cut(s)	195, 255
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	118
BstDSI	CCRYGG	2 cut(s)	195, 255
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	6 cut(s)	24, 47, 72, 139, 210, 223
BstMBI	GATC	6 cut(s)	21, 44, 69, 136, 207, 220
BstSFI	CTRYAG	1 cut(s)	181
BstX2I	RGATCY	2 cut(s)	44, 220
BstYI	RGATCY	2 cut(s)	44, 220
BtgI	CCRYGG	2 cut(s)	195, 255
BtsCI	GGATG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	196, 256
CviJI	RGCY	4 cut(s)	66, 128, 167, 215
CviKI_1	RGCY	4 cut(s)	66, 128, 167, 215
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	6 cut(s)	23, 46, 71, 138, 209, 222
DpnII	GATC	6 cut(s)	21, 44, 69, 136, 207, 220
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	195, 255
Eco47I	GGWCC	1 cut(s)	109
Eco47III	AGCGCT	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	17, 39
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	195, 255
ErhI	CCWWGG	2 cut(s)	195, 255
FaeI	CATG	2 cut(s)	199, 259
FaiI	YATR	2 cut(s)	197, 257
FatI	CATG	2 cut(s)	195, 255
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	96
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	199, 259
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HphI	GGTGA	2 cut(s)	145, 244
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	5 cut(s)	49, 82, 89, 125, 136
Hpy188III	TCNNGA	2 cut(s)	19, 39
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	259
HpyCH4V	TGCA	2 cut(s)	183, 242
Hsp92II	CATG	2 cut(s)	199, 259
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	6 cut(s)	21, 44, 69, 136, 207, 220
LmnI	GCTCC	2 cut(s)	32, 125
LpnPI	CCDG	3 cut(s)	68, 225, 238
LweI	GCATC	2 cut(s)	44, 251
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	6 cut(s)	23, 46, 71, 138, 209, 222
MboI	GATC	6 cut(s)	21, 44, 69, 136, 207, 220
MboII	GAAGA	4 cut(s)	64, 133, 166, 169
MflI	RGATCY	2 cut(s)	44, 220
MmeI	TCCRAC	2 cut(s)	10, 105
MnlI	CCTC	6 cut(s)	35, 86, 95, 100, 122, 131
MroXI	GAANNNNTTC	1 cut(s)	94
NcoI	CCATGG	2 cut(s)	195, 255
NdeII	GATC	6 cut(s)	21, 44, 69, 136, 207, 220
NlaIII	CATG	2 cut(s)	199, 259
NlaIV	GGNNCC	2 cut(s)	46, 222
PaeR7I	CTCGAG	2 cut(s)	17, 39
PdmI	GAANNNNTTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	6
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	46, 222
PspPI	GGNCC	1 cut(s)	109
PspPPI	RGGWCCY	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	44, 220
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	6 cut(s)	21, 44, 69, 136, 207, 220
Sau96I	GGNCC	1 cut(s)	109
SetI	ASST	6 cut(s)	57, 68, 87, 114, 130, 217
SfaNI	GCATC	2 cut(s)	44, 251
SfcI	CTRYAG	1 cut(s)	181
Sfr274I	CTCGAG	2 cut(s)	17, 39
SinI	GGWCC	1 cut(s)	109
SlaI	CTCGAG	2 cut(s)	17, 39
SmlI	CTYRAG	4 cut(s)	17, 39, 61, 266
SmoI	CTYRAG	4 cut(s)	17, 39, 61, 266
SsiI	CCGC	2 cut(s)	5, 118
SspI	AATATT	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	195, 255
TaqI	TCGA	3 cut(s)	18, 40, 68
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	109
XagI	CCTNNNNNAGG	1 cut(s)	104
XhoI	CTCGAG	2 cut(s)	17, 39
XmnI	GAANNNNTTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.