RchiOBHm_Chr2g0134681

leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019689
Physical Location & Seq
Forward (+)
51786277 .. 51789023
2747 bp
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UTR
Exon/CDS
Intron
PRQ50568

Sequence Viewer

Length: 375 bp
ATGAATAATGAGGAGATGTTAAAAATGTCAGTTTTTACTTTTATTGATTCCCATTATGCCCTTAAAGGCAGCTCTCTCCATCTCTTCTCCTCCACAGAGATACAGACCTCCAGAAGCGGTTCCCTACCGGAGGACCTCGCTCGCACCGGAGCTTACTCCGATCTCTTCGTTTTCATCACTGACGACGAAGCCGATATCTGCTTTTACAGTAGCGCCTCTGATTTGTTATCCACAATCAGAAGCAGGAGACCGCGAAATGAGCCAAGACACCAAGAGAAGCGTTCCCGGGACTGTGCCGAAGAAGCCGAATTTCGACGAGCAGAAACCCTCGCCGGCTGTCACCGCCTCCACCGGCAAGCGCGTTTGTTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

124

Amino Acids

14.23

Weight (kDa)

6.2

Isoelectric Point (pI)

77.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39050 FvH4_5g07980 FvH4_5g07980
pyrus_communis pycom16g04190
rosa_chinensis RchiOBHm_Chr2g0134681
rosa_roxburghii Rroxscaffold_2G00102990 Rroxscaffold_7G00192900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 253, 361
AciI CCGC 3 cut(s) 117, 251, 343
AcsI RAATTY 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 72, 152
AluI AGCT 2 cut(s) 72, 152
Alw26I GTCTC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 2 cut(s) 215, 361
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 2 cut(s) 286, 287
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 87
BcnI CCSGG 2 cut(s) 286, 287
BcoDI GTCTC 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 216
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 286, 287
Bme18I GGWCC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 286, 287
BpmI CTGGAG 1 cut(s) 94
BpuMI CCSGG 2 cut(s) 286, 287
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 2 cut(s) 127, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 2 cut(s) 332, 351
BseDI CCNNGG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 26, 79
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 2 cut(s) 253, 361
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 5 cut(s) 128, 147, 286, 333, 352
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 302
Bso31I GGTCTC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 285
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 3 cut(s) 117, 251, 343
BspFNI CGCG 2 cut(s) 253, 361
BspLI GGNNCC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 241
BsrFI RCCGGY 2 cut(s) 332, 351
BssAI RCCGGY 2 cut(s) 332, 351
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 209, 293
Bst6I CTCTTC 2 cut(s) 89, 170
BstC8I GCNNGC 3 cut(s) 142, 334, 357
BstENI CCTNNNNNAGG 1 cut(s) 128
BstFNI CGCG 2 cut(s) 253, 361
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 361
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 3 cut(s) 259, 302, 342
BstSCI CCNGG 2 cut(s) 284, 285
BstUI CGCG 2 cut(s) 253, 361
BstV1I GCAGC 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 142, 334, 357
CfoI GCGC 2 cut(s) 215, 361
Cfr10I RCCGGY 2 cut(s) 332, 351
Cfr13I GGNCC 1 cut(s) 133
Cfr9I CCCGGG 1 cut(s) 285
CviJI RGCY 6 cut(s) 72, 152, 191, 262, 305, 336
CviKI_1 RGCY 6 cut(s) 72, 152, 191, 262, 305, 336
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 89, 170
EarI CTCTTC 2 cut(s) 89, 170
Eco31I GGTCTC 1 cut(s) 241
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 133
EcoRV GATATC 1 cut(s) 196
FaiI YATR 1 cut(s) 57
FaqI GGGAC 1 cut(s) 302
Fnu4HI GCNGC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 70
GlaI GCGC 2 cut(s) 214, 360
GluI GCNGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 216
HapII CCGG 5 cut(s) 128, 147, 286, 333, 352
HhaI GCGC 2 cut(s) 215, 361
Hin6I GCGC 2 cut(s) 213, 359
HinP1I GCGC 2 cut(s) 213, 359
HinfI GANTC 1 cut(s) 47
HpaII CCGG 5 cut(s) 128, 147, 286, 333, 352
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 160, 220, 239
Hpy188III TCNNGA 1 cut(s) 111
Hpy99I CGWCG 2 cut(s) 188, 318
HpyCH4III ACNGT 2 cut(s) 209, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 302, 342
HspAI GCGC 2 cut(s) 213, 359
KroI GCCGGC 1 cut(s) 332
KroNI GCCGGC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 7 cut(s) 124, 141, 160, 229, 299, 346, 365
Lsp1109I GCAGC 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 338
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 76, 157, 311
MluCI AATT 1 cut(s) 308
MnlI CCTC 8 cut(s) 4, 100, 118, 124, 146, 226, 338, 356
MroNI GCCGGC 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 2 cut(s) 20, 63
MspI CCGG 5 cut(s) 128, 147, 286, 333, 352
MspR9I CCNGG 2 cut(s) 286, 287
MvnI CGCG 2 cut(s) 253, 361
MwoI GCNNNNNNNGC 3 cut(s) 259, 302, 342
NaeI GCCGGC 1 cut(s) 334
NciI CCSGG 2 cut(s) 286, 287
NdeII GATC 1 cut(s) 160
NgoMIV GCCGGC 1 cut(s) 332
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdiI GCCGGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 133
PspPPI RGGWCCY 1 cut(s) 133
SaqAI TTAA 2 cut(s) 20, 63
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 286, 287
SetI ASST 4 cut(s) 74, 110, 138, 154
SinI GGWCC 1 cut(s) 133
SmaI CCCGGG 1 cut(s) 287
Sse9I AATT 1 cut(s) 308
SsiI CCGC 3 cut(s) 117, 251, 343
StyD4I CCNGG 2 cut(s) 284, 285
TaaI ACNGT 2 cut(s) 209, 293
TaqI TCGA 1 cut(s) 313
TasI AATT 1 cut(s) 308
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 20, 63
Tru9I TTAA 2 cut(s) 20, 63
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 17, 163
TspMI CCCGGG 1 cut(s) 285
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 133
XagI CCTNNNNNAGG 1 cut(s) 128
XapI RAATTY 1 cut(s) 308
XmaI CCCGGG 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.