Rroxscaffold_7G00192900

leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019689
Physical Location & Seq
Reverse (-)
34265238 .. 34267040
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192900.1

Sequence Viewer

Length: 492 bp
ATGGGAGGTGCGCAAGGCCGAGGCGAAGCTACCCGAAAATTTCATGACCCATGGTGGCCGGATGAGGGAGAAATCGATTGGAGAAAAAATCGAAGGCAGCTCTCTCTATCTCTTCTCCTCCACGAGATTCGGACCTCTAGAAGCGGTTCCCTACCGGAGGACCTCGCCCGCACCGGAGCTTACTCCGATCTCTTCGTTTTCATCACCGACGACGAAGCCGATATCTGCTTCTACGGTAGCGCCTCTGATTTGTTATCCACAATCGAAGCGAGGAGACTACGAAATGAGCCAAGACGCCAAGAGAAGCTTTCCGGGACTATGCCGACGAAGCTGAATTTGGATGAGCGGAAACCCTCGCCGCTGTCACCACCTCCACCGCAAGCGCATATCAAAATCGAATTTACTCTTTGCTGCTATGCTAATAGGGTTTGCTTAACTCTGGAGATGGCTGCCGATGTTATAGAGCCGCAGTTTATTGGTTTTGACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

163

Amino Acids

18.49

Weight (kDa)

5.44

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39050 FvH4_5g07980 FvH4_5g07980
pyrus_communis pycom16g04190
rosa_chinensis RchiOBHm_Chr2g0134681
rosa_roxburghii Rroxscaffold_2G00102990 Rroxscaffold_7G00192900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 12
AccBSI CCGCTC 1 cut(s) 346
AciI CCGC 6 cut(s) 144, 169, 346, 359, 377, 467
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 3 cut(s) 38, 334, 398
AcyI GRCGYC 1 cut(s) 295
AfiI CCNNNNNNNGG 2 cut(s) 65, 157
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 5 cut(s) 29, 100, 179, 307, 331
AluI AGCT 5 cut(s) 29, 100, 179, 307, 331
Alw26I GTCTC 1 cut(s) 268
AoxI GGCC 2 cut(s) 16, 56
ApeKI GCWGC 3 cut(s) 97, 411, 449
ApoI RAATTY 3 cut(s) 38, 334, 398
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 3 cut(s) 13, 242, 385
AspS9I GGNCC 2 cut(s) 132, 160
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 196, 357
AvaII GGWCC 2 cut(s) 132, 160
BauI CACGAG 1 cut(s) 122
BbvI GCAGC 3 cut(s) 109, 398, 436
BccI CCATC 1 cut(s) 439
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 243
BisI GCNGC 5 cut(s) 98, 359, 412, 450, 467
BlsI GCNGC 5 cut(s) 99, 360, 413, 451, 468
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 132, 160
BmgT120I GGNCC 2 cut(s) 132, 160
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 313
BpmI CTGGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 313
Bsa29I ATCGAT 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 19, 50
BsaWI WCCGGW 2 cut(s) 154, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 157
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 19, 50
BseGI GGATG 2 cut(s) 67, 346
BseLI CCNNNNNNNGG 2 cut(s) 65, 157
BseRI GAGGAG 2 cut(s) 107, 286
BseXI GCAGC 3 cut(s) 109, 398, 436
BshFI GGCC 2 cut(s) 18, 58
BshVI ATCGAT 1 cut(s) 75
BsiSI CCGG 4 cut(s) 59, 155, 174, 312
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 65, 157
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 2 cut(s) 18, 58
Bsp143I GATC 1 cut(s) 187
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 6 cut(s) 144, 169, 346, 359, 377, 467
BspANI GGCC 2 cut(s) 18, 58
BspDI ATCGAT 1 cut(s) 75
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 148
BsrBI CCGCTC 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 19, 50
BssMI GATC 1 cut(s) 187
BssNI GRCGYC 1 cut(s) 295
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 236, 488
Bst6I CTCTTC 2 cut(s) 117, 197
BstACI GRCGYC 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 169, 381
BstDSI CCRYGG 1 cut(s) 50
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 67, 346
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 3 cut(s) 13, 242, 385
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 311
BstV1I GCAGC 3 cut(s) 109, 398, 436
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 2 cut(s) 18, 58
BsuTUI ATCGAT 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 67, 346
Cac8I GCNNGC 2 cut(s) 169, 381
CciI TCATGA 1 cut(s) 43
CfoI GCGC 3 cut(s) 13, 242, 385
Cfr13I GGNCC 2 cut(s) 132, 160
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 1 cut(s) 303
CviAII CATG 2 cut(s) 44, 51
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 56
Eam1104I CTCTTC 2 cut(s) 117, 197
EarI CTCTTC 2 cut(s) 117, 197
Eco130I CCWWGG 1 cut(s) 50
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 132, 160
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 160
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 2 cut(s) 47, 54
FaiI YATR 6 cut(s) 45, 52, 320, 387, 417, 461
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 328
FatI CATG 2 cut(s) 43, 50
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 5 cut(s) 98, 359, 412, 450, 467
FokI GGATG 2 cut(s) 74, 353
Fsp4HI GCNGC 5 cut(s) 98, 359, 412, 450, 467
FspBI CTAG 1 cut(s) 138
FspI TGCGCA 1 cut(s) 12
GlaI GCGC 3 cut(s) 12, 241, 384
GluI GCNGC 5 cut(s) 98, 359, 412, 450, 467
GsuI CTGGAG 1 cut(s) 461
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 2 cut(s) 18, 58
HapII CCGG 4 cut(s) 59, 155, 174, 312
HgaI GACGC 1 cut(s) 303
HhaI GCGC 3 cut(s) 13, 242, 385
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 2 cut(s) 47, 54
Hin6I GCGC 3 cut(s) 11, 240, 383
HinP1I GCGC 3 cut(s) 11, 240, 383
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 1 cut(s) 127
HpaII CCGG 4 cut(s) 59, 155, 174, 312
HphI GGTGA 2 cut(s) 196, 357
Hpy188I TCNGA 3 cut(s) 132, 187, 247
Hpy188III TCNNGA 3 cut(s) 44, 138, 440
Hpy99I CGWCG 3 cut(s) 212, 215, 328
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 2 cut(s) 236, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 2 cut(s) 47, 54
HspAI GCGC 3 cut(s) 11, 240, 383
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 5 cut(s) 72, 168, 187, 325, 425
Lsp1109I GCAGC 3 cut(s) 109, 398, 436
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 363
MalI GATC 1 cut(s) 189
MbiI CCGCTC 1 cut(s) 346
MboI GATC 1 cut(s) 187
MboII GAAGA 2 cut(s) 104, 184
MluCI AATT 3 cut(s) 38, 334, 398
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 2 cut(s) 434, 490
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 4 cut(s) 59, 155, 174, 312
MspR9I CCNGG 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 328
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 1 cut(s) 50
NdeII GATC 1 cut(s) 187
NlaIII CATG 2 cut(s) 47, 54
NlaIV GGNNCC 1 cut(s) 148
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 363
NsbI TGCGCA 1 cut(s) 12
PagI TCATGA 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 311
PkrI GCNGC 5 cut(s) 99, 360, 413, 451, 468
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 132, 160
PspPPI RGGWCCY 1 cut(s) 160
SaqAI TTAA 2 cut(s) 434, 490
SatI GCNGC 5 cut(s) 98, 359, 412, 450, 467
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 2 cut(s) 132, 160
ScrFI CCNGG 1 cut(s) 313
SetI ASST 9 cut(s) 10, 31, 102, 137, 165, 181, 309, 333, 373
SinI GGWCC 2 cut(s) 132, 160
Sse9I AATT 3 cut(s) 38, 334, 398
SsiI CCGC 6 cut(s) 144, 169, 346, 359, 377, 467
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 2 cut(s) 236, 488
TaqI TCGA 4 cut(s) 75, 91, 264, 396
TasI AATT 3 cut(s) 38, 334, 398
TauI GCSGC 2 cut(s) 361, 469
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 2 cut(s) 434, 490
Tru9I TTAA 2 cut(s) 434, 490
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 3 cut(s) 97, 411, 449
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 2 cut(s) 32, 190
VpaK11BI GGWCC 2 cut(s) 132, 160
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 3 cut(s) 38, 334, 398
XbaI TCTAGA 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.