pycom16g04190

leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0019689
Physical Location & Seq
Reverse (-)
2597849 .. 2598953
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04190.1

Sequence Viewer

Length: 609 bp
ATGTGCTCCCCTTGGCCCGACGACCTCGCCCGAACCGGCGCATACTCGGATTTATTCGCTTTCGTCGCCGACTCCAACGCCGATGTCTGCTTCCACAGCATTGCCAATGGCGCTCCCGTAATCGGATCTCTCATGCTCGTTCGGGTAGACGAGACCTCATACGACGGGGTTTCCATCGGCCAAAACTACATCCTCGTAAACTACGGGCGGTTCTCCTGCGGCGCCGATCCGTTTGGCCCCGGCTTCACCAACGACACCGACCTATTCGGTCTACCGGCGCCGAATCCTCACCCCGAACTATTTCCCGGCAAACTGTACCAATCGGCGGCGGTTGTCGAGGGGGAAGGAGTCATAGTGTACGAATTACCGGTGGACGTGGAGCTGGACTACTTCCCGTGGCTACATTTCGCGGAAATCGATCCGGGAGTGACAGAGGCGGGGCAGAGAGTGTTCGACGGGGTGGGGAGCTTCGCGGCGTACTCGTGGAGTTATAGAGTGAAGAACTTGATCAGTACGGTGTTGACGGTGGAGCTTCAGAGTGTGGCCGGCACGGCGTTGATTTGTGGGCTAGAGAACTACGCTCTCGTTCCCGCCAATAAATTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

203

Amino Acids

21.71

Weight (kDa)

4.15

Isoelectric Point (pI)

26.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 13 - 78 1.5e-06 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39050 FvH4_5g07980 FvH4_5g07980
pyrus_communis pycom16g04190
rosa_chinensis RchiOBHm_Chr2g0134681
rosa_roxburghii Rroxscaffold_2G00102990 Rroxscaffold_7G00192900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 277
AccI GTMKAC 2 cut(s) 147, 271
AccII CGCG 2 cut(s) 410, 473
AciI CCGC 8 cut(s) 208, 219, 326, 329, 410, 437, 473, 591
AclWI GGATC 3 cut(s) 133, 221, 413
AcoI YGGCCR 2 cut(s) 178, 543
AcuI CTGAAG 1 cut(s) 518
AcyI GRCGYC 2 cut(s) 222, 278
AfaI GTAC 4 cut(s) 317, 359, 479, 514
AfiI CCNNNNNNNGG 2 cut(s) 122, 325
AgeI ACCGGT 1 cut(s) 367
AjiI CACGTC 1 cut(s) 376
AluBI AGCT 3 cut(s) 382, 468, 532
AluI AGCT 3 cut(s) 382, 468, 532
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 3 cut(s) 133, 221, 413
AoxI GGCC 4 cut(s) 14, 178, 235, 543
AsiGI ACCGGT 1 cut(s) 367
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 4 cut(s) 41, 113, 224, 280
AspS9I GGNCC 2 cut(s) 15, 236
AsuC2I CCSGG 3 cut(s) 240, 306, 423
AsuHPI GGTGA 2 cut(s) 238, 281
BanI GGYRCC 2 cut(s) 221, 277
BauI CACGAG 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 567
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 3 cut(s) 240, 306, 423
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 569
BfoI RGCGCY 3 cut(s) 114, 225, 281
BglI GCCNNNNNGGC 1 cut(s) 551
BisI GCNGC 3 cut(s) 220, 327, 474
BlsI GCNGC 3 cut(s) 221, 328, 475
Bme1390I CCNGG 3 cut(s) 240, 306, 423
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 15, 236
BmiI GGNNCC 3 cut(s) 223, 238, 279
BmrFI CCNGG 3 cut(s) 240, 306, 423
BpuMI CCSGG 3 cut(s) 240, 306, 423
Bsa29I ATCGAT 1 cut(s) 417
BsaHI GRCGYC 2 cut(s) 222, 278
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 11, 238, 395
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 325
Bse118I RCCGGY 4 cut(s) 35, 274, 367, 545
Bse3DI GCAATG 1 cut(s) 99
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 11, 238, 395
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 122, 325
BseMI GCAATG 1 cut(s) 99
Bsh1236I CGCG 2 cut(s) 410, 473
BshFI GGCC 4 cut(s) 16, 180, 237, 545
BshNI GGYRCC 2 cut(s) 221, 277
BshTI ACCGGT 1 cut(s) 367
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 7 cut(s) 36, 240, 275, 306, 368, 422, 546
BslI CCNNNNNNNGG 2 cut(s) 122, 325
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 4 cut(s) 16, 180, 237, 545
Bso31I GGTCTC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 125, 226, 418, 507
BspACI CCGC 8 cut(s) 208, 219, 326, 329, 410, 437, 473, 591
BspANI GGCC 4 cut(s) 16, 180, 237, 545
BspDI ATCGAT 1 cut(s) 417
BspFNI CGCG 2 cut(s) 410, 473
BspLI GGNNCC 3 cut(s) 223, 238, 279
BspPI GGATC 3 cut(s) 133, 221, 413
BspT107I GGYRCC 2 cut(s) 221, 277
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 4 cut(s) 35, 274, 367, 545
BssAI RCCGGY 4 cut(s) 35, 274, 367, 545
BssECI CCNNGG 3 cut(s) 11, 238, 395
BssMI GATC 4 cut(s) 125, 226, 418, 507
BssNI GRCGYC 2 cut(s) 222, 278
BssSI CACGAG 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 481
Bst4CI ACNGT 3 cut(s) 315, 517, 526
BstACI GRCGYC 2 cut(s) 222, 278
BstC8I GCNNGC 1 cut(s) 547
BstDSI CCRYGG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 2 cut(s) 410, 473
BstH2I RGCGCY 3 cut(s) 114, 225, 281
BstHHI GCGC 4 cut(s) 41, 113, 224, 280
BstKTI GATC 4 cut(s) 128, 229, 421, 510
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 125, 226, 418, 507
BstMWI GCNNNNNNNGC 4 cut(s) 65, 96, 110, 551
BstSCI CCNGG 3 cut(s) 238, 304, 421
BstUI CGCG 2 cut(s) 410, 473
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 417
BsuRI GGCC 4 cut(s) 16, 180, 237, 545
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 395
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 547
CfoI GCGC 4 cut(s) 41, 113, 224, 280
Cfr10I RCCGGY 4 cut(s) 35, 274, 367, 545
Cfr13I GGNCC 2 cut(s) 15, 236
ClaI ATCGAT 1 cut(s) 417
Csp6I GTAC 4 cut(s) 316, 358, 478, 513
CspAI ACCGGT 1 cut(s) 367
CviAII CATG 1 cut(s) 133
CviQI GTAC 4 cut(s) 316, 358, 478, 513
DinI GGCGCC 2 cut(s) 223, 279
DpnI GATC 4 cut(s) 127, 228, 420, 509
DpnII GATC 4 cut(s) 125, 226, 418, 507
EaeI YGGCCR 2 cut(s) 178, 543
Eco130I CCWWGG 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 11
EgeI GGCGCC 2 cut(s) 223, 279
EheI GGCGCC 2 cut(s) 223, 279
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 136
FaiI YATR 6 cut(s) 43, 134, 160, 353, 492, 607
FatI CATG 1 cut(s) 132
FauI CCCGC 2 cut(s) 430, 598
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 2 cut(s) 147, 271
Fnu4HI GCNGC 3 cut(s) 220, 327, 474
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 3 cut(s) 220, 327, 474
FspBI CTAG 1 cut(s) 569
GlaI GCGC 4 cut(s) 40, 112, 223, 279
GluI GCNGC 3 cut(s) 220, 327, 474
HaeII RGCGCY 3 cut(s) 114, 225, 281
HaeIII GGCC 4 cut(s) 16, 180, 237, 545
HapII CCGG 7 cut(s) 36, 240, 275, 306, 368, 422, 546
HhaI GCGC 4 cut(s) 41, 113, 224, 280
Hin1I GRCGYC 2 cut(s) 222, 278
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 4 cut(s) 39, 111, 222, 278
HinP1I GCGC 4 cut(s) 39, 111, 222, 278
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 3 cut(s) 71, 283, 348
HpaII CCGG 7 cut(s) 36, 240, 275, 306, 368, 422, 546
HphI GGTGA 2 cut(s) 238, 281
Hpy166II GTNNAC 6 cut(s) 148, 199, 272, 358, 373, 522
Hpy188I TCNGA 3 cut(s) 49, 125, 537
Hpy8I GTNNAC 6 cut(s) 148, 199, 272, 358, 373, 522
Hpy99I CGWCG 4 cut(s) 23, 68, 167, 458
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 3 cut(s) 315, 517, 526
HpyCH4IV ACGT 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 96, 110, 551
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 2 cut(s) 222, 278
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 4 cut(s) 39, 111, 222, 278
KasI GGCGCC 2 cut(s) 221, 277
KroI GCCGGC 1 cut(s) 545
KroNI GCCGGC 1 cut(s) 547
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 4 cut(s) 125, 226, 418, 507
LmnI GCTCC 5 cut(s) 11, 118, 379, 465, 529
LpnPI CCDG 9 cut(s) 49, 229, 253, 288, 319, 368, 381, 435, 559
MaeI CTAG 1 cut(s) 569
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 427
MalI GATC 4 cut(s) 127, 228, 420, 509
MboI GATC 4 cut(s) 125, 226, 418, 507
MboII GAAGA 1 cut(s) 511
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 362, 599
Mly113I GGCGCC 2 cut(s) 222, 278
MlyI GAGTC 2 cut(s) 65, 357
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 6 cut(s) 35, 166, 203, 297, 331, 427
MroNI GCCGGC 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 300
MspI CCGG 7 cut(s) 36, 240, 275, 306, 368, 422, 546
MspR9I CCNGG 3 cut(s) 240, 306, 423
MvnI CGCG 2 cut(s) 410, 473
MwoI GCNNNNNNNGC 4 cut(s) 65, 96, 110, 551
NaeI GCCGGC 1 cut(s) 547
NarI GGCGCC 2 cut(s) 222, 278
NciI CCSGG 3 cut(s) 240, 306, 423
NdeII GATC 4 cut(s) 125, 226, 418, 507
NgoMIV GCCGGC 1 cut(s) 545
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 3 cut(s) 223, 238, 279
NmuCI GTSAC 1 cut(s) 427
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PdiI GCCGGC 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 421
PinAI ACCGGT 1 cut(s) 367
PkrI GCNGC 3 cut(s) 221, 328, 475
PleI GAGTC 2 cut(s) 65, 356
PluTI GGCGCC 2 cut(s) 225, 281
PpsI GAGTC 2 cut(s) 65, 356
PspN4I GGNNCC 3 cut(s) 223, 238, 279
PspPI GGNCC 2 cut(s) 15, 236
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 4 cut(s) 317, 359, 479, 514
RsaNI GTAC 4 cut(s) 316, 358, 478, 513
SatI GCNGC 3 cut(s) 220, 327, 474
Sau3AI GATC 4 cut(s) 125, 226, 418, 507
Sau96I GGNCC 2 cut(s) 15, 236
SchI GAGTC 2 cut(s) 65, 357
ScrFI CCNGG 3 cut(s) 240, 306, 423
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 27, 158, 264, 378, 384, 470, 534
SfoI GGCGCC 2 cut(s) 223, 279
Sse9I AATT 2 cut(s) 362, 599
SsiI CCGC 8 cut(s) 208, 219, 326, 329, 410, 437, 473, 591
SspDI GGCGCC 2 cut(s) 221, 277
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 3 cut(s) 238, 304, 421
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 3 cut(s) 315, 517, 526
TaiI ACGT 1 cut(s) 378
TaqI TCGA 3 cut(s) 336, 417, 453
TaqII GACCGA 1 cut(s) 257
TasI AATT 2 cut(s) 362, 599
TauI GCSGC 3 cut(s) 222, 329, 476
TfiI GAWTC 1 cut(s) 283
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspGWI ACGGA 1 cut(s) 219
XmiI GTMKAC 2 cut(s) 147, 271
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.