FvH4_3g40290

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011946
Physical Location & Seq
Forward (+)
34035941 .. 34037917
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40290.t1

Sequence Viewer

Length: 1284 bp
ATGGAATCAGCCGGGGGTAAACCCCTTAAACCCTCCTCAAACATATCTGATATAGTCTCCAAGTTTGCCAAAGTTTGCAAATTGAGATCCATTGGAGTGCACCAACCTCACAACAGCAGTAATGCTCCTTCGGGCGAAGATAGCAGCGATGTGACTGAGGACACCGAGTGTGGTGGGGTGAAGATCCATCCCCAACCTGTTGAAGTTAAAGGAGAAAGCAAAATCTGTGGAGGTGAGGAGTTATCCAAGTTGTTTGACATTGTTTCGACACTGAAGTTGGCTTATGTTCAGCTCCAGGAAGCTCACTTACCCTACAACCCAAAAAAGATTATAGCTGCAGATGAGCGTTTTATGGCTGAGCTTGAAGCAATATGTAAGATGAAGCGCGTGTACAAGGAGAAGCAATTTGTGAAGTTGAAGTCAGAATCTTCTCGTTCTGTTATTCTCAAGAAGAAAATTGAATTGAATGAGAAGCTGCTGGAGGAGTTTAAGTTACAAATGGAAGTCAACAATTCTGAGATAATCTGCCTGCATAAAGAGCTCAGAGATTTGAATTTGGTGAATGCGACACTGGCTGAGAAGGTAAGGCAGATGAGTTTGCAAAGGAAGACCACAAGGGTTTGGACCATCACAAGATTTCAGGATACTTACAGAGCTGCGTCGAAATCAATTCATGACTTCGCAAAGCCTTTAATCAGTTTGATGAAAGCTACAGGCTGGGACTTGGACCTTGCAGCAAAAGCAATAGAAGCAGAAGCTGCTTACTTGAAAAGGTCCCACAAGAAGTATGCATTTGAAGCTTACATTTCAAGGAGAATGTTTTCTGGGATATCATTGAAATCTTATAATGTGGATGGTATTATGAGATATGATGATCCCATCGATGTGTTGATTGAGAATCCAGATTCAGATTTTGCCCGATATTGTGGAGAAAAGTATCTCCAAGTTGTTCATCCAATGATGGAAACACGGTTTTTTGGGAATCTAGATCACAGGACGCTTGTATTGAGCGGCAAGCATCCAAGAACATCATTCTACCAAATATTTGCAAGAATGGCAAGGTGGATTTGGGTTTTGCACAGAATTGCACCTTTGATAGATTCTGAAGCAAAAATGTTTGCTGTCAAAAGAGGAAGCAAATTCTCACATGTTTATATGGAGTCGGTGGTGGAGGATGGAGAAGATGCAGCTGTCTCGGATGGAAGAAAGGTTGAGTTTATGGTCATGCCAGGATTTAAAATTCTAGAGACATTAGTGAAGTCTCGTGTGTATGTTTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

428

Amino Acids

48.66

Weight (kDa)

9.12

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 81 - 194 2.2e-25 Plant protein of unknown function (DUF641)
GIL1_IRKI_C PF24994 372 - 424 2.2e-20 GIL1/IRKI C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011946)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30380
fragaria_vesca FvH4_3g40290
malus_domestica MD03G1053800.v1.1 MD11G1055400.v1.1
prunus_persica Prupe.6G042900_v2.0.a1 Prupe.6G042900_v2.0.a1 Prupe.6G042900_v2.0.a1 Prupe.6G042900_v2.0.a1
pyrus_communis pycom03g04270
rosa_chinensis RchiOBHm_Chr5g0072631
rosa_laevigata RLG00000036318
rosa_multiflora Rmu_sc0002088.1_g000004
rosa_roxburghii Rroxscaffold_1G00008520
rosa_rugosa Rorug05G0418900
rosa_samantha Rh5AG475800 Rh5BG495900 Rh5CG519700 Rh5DG508400
rosa_wichuraiana Rw5G044180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 846
AccBSI CCGCTC 1 cut(s) 1011
AccII CGCG 1 cut(s) 387
AciI CCGC 1 cut(s) 1011
AclWI GGATC 3 cut(s) 81, 178, 869
AcsI RAATTY 3 cut(s) 553, 1139, 1239
AcuI CTGAAG 2 cut(s) 293, 1125
AdeI CACNNNGTG 1 cut(s) 168
AfaI GTAC 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 1147
AjnI CCWGG 2 cut(s) 294, 1228
Alw21I GWGCWC 2 cut(s) 102, 543
Alw26I GTCTC 4 cut(s) 61, 1198, 1241, 1266
Alw44I GTGCAC 1 cut(s) 98
AlwI GGATC 3 cut(s) 81, 178, 869
AlwNI CAGNNNCTG 1 cut(s) 758
ApaLI GTGCAC 1 cut(s) 98
ApeKI GCWGC 7 cut(s) 144, 335, 475, 656, 734, 758, 1187
ApoI RAATTY 3 cut(s) 553, 1139, 1239
Asp700I GAANNNNTTC 1 cut(s) 820
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 3 cut(s) 624, 727, 774
AsuC2I CCSGG 1 cut(s) 13
AsuHPI GGTGA 3 cut(s) 190, 245, 571
AvaII GGWCC 3 cut(s) 624, 727, 774
BaeGI GKGCMC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 543
BarI GAAGNNNNNNTAC 6 cut(s) 112, 144, 291, 323, 374, 406
BauI CACGAG 1 cut(s) 1263
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 2 cut(s) 102, 543
BbvI GCAGC 7 cut(s) 156, 322, 462, 643, 745, 746, 1199
BccI CCATC 7 cut(s) 195, 635, 848, 887, 955, 1169, 1193
BcgI CGANNNNNNTGC 2 cut(s) 1176, 1210
BciT130I CCWGG 2 cut(s) 296, 1230
BciVI GTATCC 1 cut(s) 637
BcnI CCSGG 1 cut(s) 13
BcoDI GTCTC 4 cut(s) 61, 1198, 1241, 1266
BfaI CTAG 2 cut(s) 986, 1244
BfmI CTRYAG 2 cut(s) 336, 711
BfuI GTATCC 1 cut(s) 637
BisI GCNGC 8 cut(s) 145, 336, 476, 657, 735, 759, 1012, 1188
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 8 cut(s) 146, 337, 477, 658, 736, 760, 1013, 1189
Bme1390I CCNGG 3 cut(s) 13, 296, 1230
Bme18I GGWCC 3 cut(s) 624, 727, 774
BmgT120I GGNCC 3 cut(s) 624, 727, 774
BmiI GGNNCC 1 cut(s) 776
BmrFI CCNGG 3 cut(s) 13, 296, 1230
BmsI GCATC 2 cut(s) 1027, 1174
BpiI GAAGAC 1 cut(s) 614
BpmI CTGGAG 2 cut(s) 278, 500
Bpu1102I GCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 882
BsaJI CCNNGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bse1I ACTGG 1 cut(s) 576
BseBI CCWGG 2 cut(s) 296, 1230
BseCI ATCGAT 1 cut(s) 882
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 6 cut(s) 187, 859, 952, 1018, 1180, 1204
BseMII CTCAG 5 cut(s) 147, 348, 507, 556, 567
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 3 cut(s) 25, 251, 497
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 7 cut(s) 156, 322, 462, 643, 745, 746, 1199
BseYI CCCAGC 1 cut(s) 717
Bsh1236I CGCG 1 cut(s) 387
BshVI ATCGAT 1 cut(s) 882
BsiHKAI GWGCWC 2 cut(s) 102, 543
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 2 cut(s) 734, 760
BsmAI GTCTC 4 cut(s) 61, 1198, 1241, 1266
BsmFI GGGAC 2 cut(s) 734, 760
BsmI GAATGC 1 cut(s) 568
Bsp1286I GDGCHC 2 cut(s) 102, 543
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 4 cut(s) 86, 183, 874, 988
Bsp1720I GCTNAGC 1 cut(s) 357
BspACI CCGC 1 cut(s) 1011
BspCNI CTCAG 5 cut(s) 148, 349, 508, 555, 568
BspDI ATCGAT 1 cut(s) 882
BspFNI CGCG 1 cut(s) 387
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 1 cut(s) 776
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 3 cut(s) 81, 178, 869
BsrBI CCGCTC 1 cut(s) 1011
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 1 cut(s) 576
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 4 cut(s) 86, 183, 874, 988
BssSI CACGAG 1 cut(s) 1263
Bst2BI CACGAG 1 cut(s) 1263
Bst2UI CCWGG 2 cut(s) 296, 1230
Bst4CI ACNGT 1 cut(s) 972
BstAPI GCANNNNNTGC 1 cut(s) 758
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 530, 1016
BstDEI CTNAG 5 cut(s) 156, 357, 516, 542, 576
BstF5I GGATG 6 cut(s) 187, 859, 952, 1018, 1180, 1204
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 4 cut(s) 89, 186, 877, 991
BstMAI GTCTC 4 cut(s) 61, 1198, 1241, 1266
BstMBI GATC 4 cut(s) 86, 183, 874, 988
BstMWI GCNNNNNNNGC 8 cut(s) 141, 538, 572, 740, 749, 758, 797, 1055
BstNI CCWGG 2 cut(s) 296, 1230
BstNSI RCATGY 1 cut(s) 1151
BstSCI CCNGG 3 cut(s) 11, 294, 1228
BstSFI CTRYAG 2 cut(s) 336, 711
BstSLI GKGCMC 1 cut(s) 102
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 7 cut(s) 156, 322, 462, 643, 745, 746, 1199
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 2 cut(s) 86, 183
BstYI RGATCY 2 cut(s) 86, 183
Bsu15I ATCGAT 1 cut(s) 882
BsuI GTATCC 1 cut(s) 637
BsuTUI ATCGAT 1 cut(s) 882
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 6 cut(s) 187, 859, 952, 1018, 1180, 1204
BtsIMutI CAGTG 2 cut(s) 269, 569
Cac8I GCNNGC 2 cut(s) 530, 1016
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 387
Cfr13I GGNCC 3 cut(s) 624, 727, 774
ClaI ATCGAT 1 cut(s) 882
CseI GACGC 2 cut(s) 648, 1006
Csp6I GTAC 1 cut(s) 391
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 3 cut(s) 674, 1148, 1225
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 5 cut(s) 156, 357, 516, 542, 576
DpnI GATC 4 cut(s) 88, 185, 876, 990
DpnII GATC 4 cut(s) 86, 183, 874, 988
DraI TTTAAA 1 cut(s) 1237
DraIII CACNNNGTG 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 543
Eco32I GATATC 1 cut(s) 831
Eco47I GGWCC 3 cut(s) 624, 727, 774
Eco53kI GAGCTC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 293, 1125
EcoICRI GAGCTC 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 774
EcoRII CCWGG 2 cut(s) 294, 1228
EcoRV GATATC 1 cut(s) 831
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 543
FaeI CATG 3 cut(s) 677, 1151, 1228
FaqI GGGAC 2 cut(s) 734, 760
FatI CATG 3 cut(s) 673, 1147, 1224
Fnu4HI GCNGC 8 cut(s) 145, 336, 476, 657, 735, 759, 1012, 1188
FokI GGATG 6 cut(s) 174, 866, 939, 1005, 1187, 1211
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 8 cut(s) 145, 336, 476, 657, 735, 759, 1012, 1188
FspBI CTAG 2 cut(s) 986, 1244
GlaI GCGC 1 cut(s) 386
GluI GCNGC 8 cut(s) 145, 336, 476, 657, 735, 759, 1012, 1188
GsaI CCCAGC 1 cut(s) 721
GsuI CTGGAG 2 cut(s) 278, 500
HapII CCGG 1 cut(s) 12
HgaI GACGC 2 cut(s) 648, 1006
HhaI GCGC 1 cut(s) 387
Hin1II CATG 3 cut(s) 677, 1151, 1228
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 798
HinfI GANTC 7 cut(s) 5, 425, 898, 905, 982, 1100, 1160
HpaII CCGG 1 cut(s) 12
HphI GGTGA 3 cut(s) 190, 245, 571
Hpy166II GTNNAC 4 cut(s) 20, 100, 391, 508
Hpy188I TCNGA 7 cut(s) 49, 424, 517, 545, 910, 1105, 1198
Hpy188III TCNNGA 6 cut(s) 448, 641, 674, 902, 986, 1244
Hpy8I GTNNAC 4 cut(s) 20, 100, 391, 508
Hpy99I CGWCG 1 cut(s) 664
HpyAV CCTTC 2 cut(s) 138, 574
HpyCH4III ACNGT 1 cut(s) 972
HpyF10VI GCNNNNNNNGC 8 cut(s) 141, 538, 572, 740, 749, 758, 797, 1055
HpyF3I CTNAG 5 cut(s) 156, 357, 516, 542, 576
Hsp92II CATG 3 cut(s) 677, 1151, 1228
HspAI GCGC 1 cut(s) 385
Kzo9I GATC 4 cut(s) 86, 183, 874, 988
LmnI GCTCC 2 cut(s) 130, 297
Lsp1109I GCAGC 7 cut(s) 156, 322, 462, 643, 745, 746, 1199
LweI GCATC 2 cut(s) 1027, 1174
MaeI CTAG 2 cut(s) 986, 1244
MaeIII GTNAC 2 cut(s) 151, 492
MalI GATC 4 cut(s) 88, 185, 876, 990
MbiI CCGCTC 1 cut(s) 1011
MboI GATC 4 cut(s) 86, 183, 874, 988
MboII GAAGA 7 cut(s) 149, 193, 420, 463, 619, 1193, 1215
MflI RGATCY 2 cut(s) 86, 183
MhlI GDGCHC 2 cut(s) 102, 543
MlyI GAGTC 1 cut(s) 1169
MnlI CCTC 9 cut(s) 43, 46, 117, 151, 224, 229, 475, 1124, 1165
Mph1103I ATGCAT 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 820
MseI TTAA 5 cut(s) 27, 207, 489, 692, 1236
MslI CAYNNNNRTG 2 cut(s) 95, 884
MspA1I CMGCKG 1 cut(s) 1190
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 3 cut(s) 13, 296, 1230
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 2 cut(s) 296, 1230
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 8 cut(s) 141, 538, 572, 740, 749, 758, 797, 1055
NciI CCSGG 1 cut(s) 13
NdeII GATC 4 cut(s) 86, 183, 874, 988
NlaIII CATG 3 cut(s) 677, 1151, 1228
NlaIV GGNNCC 1 cut(s) 776
NmuCI GTSAC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 1 cut(s) 1151
PagI TCATGA 1 cut(s) 673
PciI ACATGT 1 cut(s) 1147
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 1 cut(s) 820
PfeI GAWTC 6 cut(s) 5, 425, 898, 905, 982, 1100
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 8 cut(s) 146, 337, 477, 658, 736, 760, 1013, 1189
PleI GAGTC 1 cut(s) 1168
PpsI GAGTC 1 cut(s) 1168
PpuMI RGGWCCY 1 cut(s) 774
PscI ACATGT 1 cut(s) 1147
PsiI TTATAA 1 cut(s) 846
Psp124BI GAGCTC 1 cut(s) 543
Psp5II RGGWCCY 1 cut(s) 774
Psp6I CCWGG 2 cut(s) 294, 1228
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 2 cut(s) 294, 1228
PspN4I GGNNCC 1 cut(s) 776
PspPI GGNCC 3 cut(s) 624, 727, 774
PspPPI RGGWCCY 1 cut(s) 774
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 2 cut(s) 86, 183
PvuII CAGCTG 1 cut(s) 1190
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 2 cut(s) 95, 884
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 5 cut(s) 27, 207, 489, 692, 1236
SatI GCNGC 8 cut(s) 145, 336, 476, 657, 735, 759, 1012, 1188
Sau3AI GATC 4 cut(s) 86, 183, 874, 988
Sau96I GGNCC 3 cut(s) 624, 727, 774
SchI GAGTC 1 cut(s) 1169
ScrFI CCNGG 3 cut(s) 13, 296, 1230
SduI GDGCHC 2 cut(s) 102, 543
SfaNI GCATC 2 cut(s) 1027, 1174
SfcI CTRYAG 2 cut(s) 336, 711
SinI GGWCC 3 cut(s) 624, 727, 774
SmiMI CAYNNNNRTG 2 cut(s) 95, 884
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SsiI CCGC 1 cut(s) 1011
SspI AATATT 1 cut(s) 1044
SspMI CTAG 2 cut(s) 986, 1244
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 3 cut(s) 11, 294, 1228
TaaI ACNGT 1 cut(s) 972
TaqI TCGA 3 cut(s) 266, 662, 882
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 1014
TfiI GAWTC 6 cut(s) 5, 425, 898, 905, 982, 1100
Tru1I TTAA 5 cut(s) 27, 207, 489, 692, 1236
Tru9I TTAA 5 cut(s) 27, 207, 489, 692, 1236
TscAI CASTG 2 cut(s) 276, 576
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 7 cut(s) 144, 335, 475, 656, 734, 758, 1187
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 4 cut(s) 395, 662, 719, 941
TspRI CASTG 2 cut(s) 276, 576
VneI GTGCAC 1 cut(s) 98
VpaK11BI GGWCC 3 cut(s) 624, 727, 774
XapI RAATTY 3 cut(s) 553, 1139, 1239
XbaI TCTAGA 2 cut(s) 985, 1243
XceI RCATGY 1 cut(s) 1151
XmnI GAANNNNTTC 1 cut(s) 820
XspI CTAG 2 cut(s) 986, 1244
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.