FvH4_3g43840

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009575
Physical Location & Seq
Reverse (-)
36511441 .. 36516957
5517 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43840.t1

Sequence Viewer

Length: 1938 bp
ATGAGAAAAGACGGTCAGAAAAATATAATGCAAATCCTTTCGCATTTCTCCTCCAAAGCCGCACCTTCTCTCCTCCTTCCCTCTCTCACCTCCGCCCTCACCTTCCGCCGTCGCCCTCCCAATTTCCATTTCTACCCCTCCTCTTCCTTCAAATTCCCCTCCCTCGCTTGCCACCTCACCTCCGGCCGTAATAACCAACCCTCTCCAATGGACTCGCCGCCGCCGCCGGAGCAGCCCTCCGTCGACTCCGTCACGCACGATTTGCGCAACCAGAGCTTGGCCGCCGACGCGCCGAGAGCAAGGTTGAAGCTTGAGGATCTCAACTGGGAGAACTCGTTCGTCAGAGAGCTGCCTGGTGATCCGAGGACCGATACGTTTCCGCGAGAGGTCTTGCATGCCTGTTTTACAAAAGTAACTCCGTCAGCTTCAGTTGATGATCCTCAGCTCGTTGCCTGGTCAGAGTCGGTTGCTGAATTGCTTGAATTGGATCCTCAAGAATTTGAAAGGCCAGATTTCCCTCTTTTGTTCTCTGGAGCATCTCCTTTAGTCGGATCATCACCCTATGCTCAGTGCTATGGAGGACATCAGTTCGGCATGTGGGCGGGACAATTGGGAGATGGTCGGGCTATTACACTTGGAGAGGTTCTTAACTCTAAATCTGAAAGATGGGAACTGCAGCTTAAAGGTGCTGGGAAGACCCCTTACAGCCGGTTTGCAGATGGCCTTGCTGTGCTTCGTAGTAGCATTCGGGAATTCCTCTGCAGTGAAGCAATGCATAGTCTTGGTATTCCAACGACTCGTGCTCTATGTCTTGTGACAACAGGAAAACTTGTCACCCGTGACATGTTTTATGATGGCAATCCAAAGGAGGAGCCAGGTGCAATTGTTTGCAGGGTTGCTCCATCCTTCCTGCGCTTTGGATCCTATCAAATCCATGCCTCTAGGGAAAAAGAAGATCTTGCCATTGTTCGTACTCTAGCAGACTATGCCATTAGGCATCACTTCCCACATATAGAGAACATGAGTAGAAGTGAGAGTTTATCGTTCAATACGGGCAACGAAGAACATGAAATCGTTGATCTAACATCTAATAAGTATGCAGCCTGGGTGGTGGAGATTGCTGAACGTACTGCGTCCTTGGTTGCCAAATGGCAGGGGGTTGGTTTTACTCATGGTGTGTTGAACACTGACAATATGAGCATTTTGGGCCTCACCATTGATTATGGTCCTTTTGGATTTCTTGATGCATTTGATCCTAGTTACACCCCCAATACGACGGATCTTCCACAGAGGAGATATTGTTTTGCAAATCAACCTGATATTGGCTTATGGAATATTATGCAATTAACAAGAACCTTGTCATCTGCCGAGTTGATAAATGAGAAGGAGGCAAACTATGCAATGGAAAGGTATGGAACCAAATTCATGGATGATTATCAAGCTATAATGACAAAAAAAATTGGTCTCCCCAAGTATGTCAAGCAGTTGATTAGTAAACTTCTTAATAATATGGCTATTGACAAAGTGGATTACACAAACTTTTTCCGGTTGCTGTCCAATATCAAAGCTGACCCCAGCATCCCAGATGAGGAGTTGTTAAATCCACTAAAGGCTGTTCTATTAGATATTGGGCAGGAGAGGAAGGAGGCATGGATCAGCTGGGTGAGAATCTACATAGAGGAGCTATCTGCTAGTGGCATCCCAGATGAGGAGAGGAAGGTCTCAATGAATGCAGTGAATCCTAAATATGTTCTCCGAAACTACTTATGCCAGAGTGCCATTGATGCAGCTGAACAAGGTGATTTTGGAGAGGTTCAAAGGGTGCTTAAAGTGATGGAACGACCATTTGATGAGCAACCGGGAATGGAAAAGTATGCTCGCTTGCCCCCCGCGTGGGCTTATCGACCTGGAGTTTGCATGCTTTCTTGCTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

646

Amino Acids

72.42

Weight (kDa)

5.74

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelO PF02696 133 - 610 7.2e-123 Protein adenylyltransferase SelO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 266
AccB7I CCANNNNNTGG 1 cut(s) 277
AccI GTMKAC 1 cut(s) 243
AccII CGCG 3 cut(s) 290, 382, 1892
AcoI YGGCCR 2 cut(s) 184, 279
AcsI RAATTY 4 cut(s) 152, 497, 752, 1421
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 2 cut(s) 973, 1129
AfiI CCNNNNNNNGG 7 cut(s) 277, 548, 1322, 1588, 1708, 1893, 1894
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 7 cut(s) 151, 307, 482, 503, 1048, 1183, 1817
AjnI CCWGG 5 cut(s) 352, 452, 874, 1103, 1906
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 2 cut(s) 1469, 1726
AoxI GGCC 5 cut(s) 184, 279, 506, 721, 1207
ApeKI GCWGC 5 cut(s) 232, 349, 676, 1100, 1787
ApoI RAATTY 4 cut(s) 152, 497, 752, 1421
ArsI GACNNNNNNTTYG 2 cut(s) 1896, 1928
Asp700I GAANNNNTTC 1 cut(s) 335
AspLEI GCGC 3 cut(s) 267, 292, 915
AspS9I GGNCC 3 cut(s) 366, 1207, 1226
AsuC2I CCSGG 1 cut(s) 1860
AsuHPI GGTGA 9 cut(s) 79, 91, 169, 368, 549, 826, 1204, 1675, 1811
AvaII GGWCC 2 cut(s) 366, 1226
BamHI GGATCC 2 cut(s) 487, 920
BarI GAAGNNNNNNTAC 2 cut(s) 686, 718
BauI CACGAG 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 805
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 5 cut(s) 244, 336, 688, 1112, 1799
BccI CCATC 6 cut(s) 611, 660, 713, 848, 910, 1828
BceAI ACGGC 2 cut(s) 93, 171
BciT130I CCWGG 5 cut(s) 354, 454, 876, 1105, 1908
BcnI CCSGG 1 cut(s) 1860
BcoDI GTCTC 2 cut(s) 1469, 1726
BfaI CTAG 4 cut(s) 942, 977, 1257, 1692
BfmI CTRYAG 2 cut(s) 674, 760
BglII AGATCT 1 cut(s) 955
Bme1390I CCNGG 6 cut(s) 354, 454, 876, 1105, 1860, 1908
Bme18I GGWCC 2 cut(s) 366, 1226
BmgT120I GGNCC 3 cut(s) 366, 1207, 1226
BmiI GGNNCC 4 cut(s) 489, 873, 922, 1417
BmrFI CCNGG 6 cut(s) 354, 454, 876, 1105, 1860, 1908
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 6 cut(s) 545, 1006, 1234, 1587, 1707, 1774
BmuI ACTGGG 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 701
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 2 cut(s) 552, 1929
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 2 cut(s) 332, 477
BpuMI CCSGG 1 cut(s) 1860
BsaBI GATNNNNATC 2 cut(s) 858, 1434
BsaI GGTCTC 2 cut(s) 1469, 1726
BsaJI CCNNGG 3 cut(s) 362, 1104, 1137
BsaWI WCCGGW 1 cut(s) 1545
BsaXI ACNNNNNCTCC 8 cut(s) 54, 84, 164, 194, 320, 350, 1285, 1315
Bsc4I CCNNNNNNNGG 7 cut(s) 277, 548, 1322, 1588, 1708, 1893, 1894
Bse118I RCCGGY 1 cut(s) 708
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 2 cut(s) 777, 1407
Bse8I GATNNNNATC 2 cut(s) 858, 1434
BseBI CCWGG 5 cut(s) 354, 454, 876, 1105, 1908
BseDI CCNNGG 3 cut(s) 362, 1104, 1137
BseGI GGATG 4 cut(s) 902, 1435, 1578, 1698
BseJI GATNNNNATC 2 cut(s) 858, 1434
BseLI CCNNNNNNNGG 7 cut(s) 277, 548, 1322, 1588, 1708, 1893, 1894
BseMI GCAATG 2 cut(s) 777, 1407
BseMII CTCAG 2 cut(s) 455, 581
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 8 cut(s) 40, 62, 130, 884, 1306, 1604, 1694, 1724
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 5 cut(s) 244, 336, 688, 1112, 1799
BseYI CCCAGC 3 cut(s) 689, 1574, 1659
Bsh1236I CGCG 3 cut(s) 290, 382, 1892
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 5 cut(s) 186, 281, 508, 723, 1209
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 5 cut(s) 183, 227, 709, 1546, 1859
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 7 cut(s) 277, 548, 1322, 1588, 1708, 1893, 1894
BsmAI GTCTC 2 cut(s) 1469, 1726
BsmFI GGGAC 1 cut(s) 618
BsmI GAATGC 2 cut(s) 744, 1735
BsnI GGCC 5 cut(s) 186, 281, 508, 723, 1209
Bso31I GGTCTC 2 cut(s) 1469, 1726
Bsp1286I GDGCHC 1 cut(s) 805
BspANI GGCC 5 cut(s) 186, 281, 508, 723, 1209
BspCNI CTCAG 2 cut(s) 454, 580
BspFNI CGCG 3 cut(s) 290, 382, 1892
BspHI TCATGA 1 cut(s) 1934
BspLI GGNNCC 4 cut(s) 489, 873, 922, 1417
BspMAI CTGCAG 2 cut(s) 678, 764
BspTNI GGTCTC 2 cut(s) 1469, 1726
BsrDI GCAATG 2 cut(s) 777, 1407
BsrFI RCCGGY 1 cut(s) 708
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 362, 1104, 1137
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 1137
Bst2BI CACGAG 1 cut(s) 798
Bst2UI CCWGG 5 cut(s) 354, 454, 876, 1105, 1908
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 148
BstAPI GCANNNNNTGC 3 cut(s) 262, 986, 1397
BstC8I GCNNGC 5 cut(s) 169, 396, 1879, 1883, 1919
BstDEI CTNAG 2 cut(s) 441, 567
BstF5I GGATG 4 cut(s) 902, 1435, 1578, 1698
BstFNI CGCG 3 cut(s) 290, 382, 1892
BstHHI GCGC 3 cut(s) 267, 292, 915
BstMAI GTCTC 2 cut(s) 1469, 1726
BstMCI CGRYCG 1 cut(s) 187
BstNI CCWGG 5 cut(s) 354, 454, 876, 1105, 1908
BstNSI RCATGY 4 cut(s) 398, 598, 847, 1921
BstSCI CCNGG 6 cut(s) 352, 452, 874, 1103, 1858, 1906
BstSFI CTRYAG 2 cut(s) 674, 760
BstUI CGCG 3 cut(s) 290, 382, 1892
BstV1I GCAGC 5 cut(s) 244, 336, 688, 1112, 1799
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 5 cut(s) 316, 487, 920, 955, 1279
BstXI CCANNNNNNTGG 1 cut(s) 1426
BstYI RGATCY 5 cut(s) 316, 487, 920, 955, 1279
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 5 cut(s) 186, 281, 508, 723, 1209
BtsCI GGATG 4 cut(s) 902, 1435, 1578, 1698
BtsI GCAGTG 2 cut(s) 769, 1740
BtsIMutI CAGTG 4 cut(s) 575, 769, 1185, 1740
Cac8I GCNNGC 5 cut(s) 169, 396, 1879, 1883, 1919
CciI TCATGA 1 cut(s) 1934
CfoI GCGC 3 cut(s) 267, 292, 915
Cfr10I RCCGGY 1 cut(s) 708
Cfr13I GGNCC 3 cut(s) 366, 1207, 1226
CseI GACGC 2 cut(s) 296, 1122
Csp6I GTAC 2 cut(s) 972, 1128
CviQI GTAC 2 cut(s) 972, 1128
DdeI CTNAG 2 cut(s) 441, 567
EaeI YGGCCR 2 cut(s) 184, 279
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
EciI GGCGGA 2 cut(s) 82, 95
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 1137
Eco31I GGTCTC 2 cut(s) 1469, 1726
Eco47I GGWCC 2 cut(s) 366, 1226
Eco52I CGGCCG 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 5 cut(s) 352, 452, 874, 1103, 1906
EcoT14I CCWWGG 1 cut(s) 1137
EcoT22I ATGCAT 2 cut(s) 777, 1249
ErhI CCWWGG 1 cut(s) 1137
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 1 cut(s) 618
FauI CCCGC 2 cut(s) 595, 1897
FblI GTMKAC 1 cut(s) 243
FokI GGATG 4 cut(s) 889, 1442, 1565, 1685
FspBI CTAG 4 cut(s) 942, 977, 1257, 1692
FspI TGCGCA 1 cut(s) 266
GlaI GCGC 3 cut(s) 266, 291, 914
GsaI CCCAGC 3 cut(s) 693, 1578, 1663
GsuI CTGGAG 2 cut(s) 552, 1929
HaeIII GGCC 5 cut(s) 186, 281, 508, 723, 1209
HapII CCGG 5 cut(s) 183, 227, 709, 1546, 1859
HgaI GACGC 2 cut(s) 296, 1122
HhaI GCGC 3 cut(s) 267, 292, 915
Hin6I GCGC 3 cut(s) 265, 290, 913
HinP1I GCGC 3 cut(s) 265, 290, 913
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 6 cut(s) 212, 245, 461, 796, 1668, 1738
HpaII CCGG 5 cut(s) 183, 227, 709, 1546, 1859
HphI GGTGA 9 cut(s) 79, 91, 169, 368, 549, 826, 1204, 1675, 1811
Hpy166II GTNNAC 2 cut(s) 244, 1496
Hpy188I TCNGA 7 cut(s) 18, 344, 363, 460, 551, 661, 1757
Hpy188III TCNNGA 5 cut(s) 494, 531, 749, 1241, 1935
Hpy8I GTNNAC 2 cut(s) 244, 1496
Hpy99I CGWCG 4 cut(s) 114, 245, 290, 1279
HpyAV CCTTC 8 cut(s) 75, 86, 112, 157, 916, 1378, 1636, 1711
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 2 cut(s) 374, 1126
HpyF3I CTNAG 2 cut(s) 441, 567
HpySE526I ACGT 2 cut(s) 374, 1126
HspAI GCGC 3 cut(s) 265, 290, 913
LmnI GCTCC 5 cut(s) 229, 533, 871, 904, 1681
Lsp1109I GCAGC 5 cut(s) 244, 336, 688, 1112, 1799
LweI GCATC 6 cut(s) 545, 1006, 1234, 1587, 1707, 1774
MaeI CTAG 4 cut(s) 942, 977, 1257, 1692
MaeII ACGT 2 cut(s) 374, 1126
MaeIII GTNAC 6 cut(s) 250, 412, 814, 832, 839, 1259
MboII GAAGA 5 cut(s) 135, 706, 965, 1073, 1274
MfeI CAATTG 2 cut(s) 608, 882
MflI RGATCY 5 cut(s) 316, 487, 920, 955, 1279
MhlI GDGCHC 1 cut(s) 805
MlyI GAGTC 4 cut(s) 206, 239, 470, 790
MmeI TCCRAC 2 cut(s) 529, 815
Mph1103I ATGCAT 2 cut(s) 777, 1249
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 6 cut(s) 648, 681, 1346, 1503, 1598, 1827
MspA1I CMGCKG 2 cut(s) 1659, 1790
MspI CCGG 5 cut(s) 183, 227, 709, 1546, 1859
MspR9I CCNGG 6 cut(s) 354, 454, 876, 1105, 1860, 1908
MunI CAATTG 2 cut(s) 608, 882
Mva1269I GAATGC 2 cut(s) 744, 1735
MvaI CCWGG 5 cut(s) 354, 454, 876, 1105, 1908
MvnI CGCG 3 cut(s) 290, 382, 1892
NciI CCSGG 1 cut(s) 1860
NlaIV GGNNCC 4 cut(s) 489, 873, 922, 1417
NmeAIII GCCGAG 2 cut(s) 318, 1393
NmuCI GTSAC 4 cut(s) 250, 814, 832, 839
NsbI TGCGCA 1 cut(s) 266
NsiI ATGCAT 2 cut(s) 777, 1249
NspI RCATGY 4 cut(s) 398, 598, 847, 1921
PaeI GCATGC 2 cut(s) 398, 1921
PagI TCATGA 1 cut(s) 1934
PciI ACATGT 1 cut(s) 843
PctI GAATGC 2 cut(s) 744, 1735
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 1668, 1738
PflFI GACNNNGTC 1 cut(s) 248
PflMI CCANNNNNTGG 1 cut(s) 277
PleI GAGTC 4 cut(s) 206, 239, 469, 790
PpsI GAGTC 4 cut(s) 206, 239, 469, 790
PscI ACATGT 1 cut(s) 843
Psp6I CCWGG 5 cut(s) 352, 452, 874, 1103, 1906
PspFI CCCAGC 3 cut(s) 689, 1574, 1659
PspGI CCWGG 5 cut(s) 352, 452, 874, 1103, 1906
PspN4I GGNNCC 4 cut(s) 489, 873, 922, 1417
PspPI GGNCC 3 cut(s) 366, 1207, 1226
PstI CTGCAG 2 cut(s) 678, 764
PsuI RGATCY 5 cut(s) 316, 487, 920, 955, 1279
PsyI GACNNNGTC 1 cut(s) 248
PvuII CAGCTG 2 cut(s) 1659, 1790
RsaI GTAC 2 cut(s) 973, 1129
RsaNI GTAC 2 cut(s) 972, 1128
SalI GTCGAC 1 cut(s) 242
SaqAI TTAA 6 cut(s) 648, 681, 1346, 1503, 1598, 1827
Sau96I GGNCC 3 cut(s) 366, 1207, 1226
SchI GAGTC 4 cut(s) 206, 239, 470, 790
ScrFI CCNGG 6 cut(s) 354, 454, 876, 1105, 1860, 1908
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 6 cut(s) 545, 1006, 1234, 1587, 1707, 1774
SfcI CTRYAG 2 cut(s) 674, 760
SinI GGWCC 2 cut(s) 366, 1226
SmlI CTYRAG 2 cut(s) 311, 492
SmoI CTYRAG 2 cut(s) 311, 492
SphI GCATGC 2 cut(s) 398, 1921
SspI AATATT 1 cut(s) 1336
SspMI CTAG 4 cut(s) 942, 977, 1257, 1692
StyD4I CCNGG 6 cut(s) 352, 452, 874, 1103, 1858, 1906
StyI CCWWGG 1 cut(s) 1137
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 2 cut(s) 377, 1129
TaqI TCGA 2 cut(s) 243, 1903
TaqII GACCGA 1 cut(s) 383
TauI GCSGC 5 cut(s) 62, 220, 223, 226, 284
TfiI GAWTC 2 cut(s) 1668, 1738
Tru1I TTAA 6 cut(s) 648, 681, 1346, 1503, 1598, 1827
Tru9I TTAA 6 cut(s) 648, 681, 1346, 1503, 1598, 1827
TscAI CASTG 4 cut(s) 575, 769, 1192, 1740
TseFI GTSAC 4 cut(s) 250, 814, 832, 839
TseI GCWGC 5 cut(s) 232, 349, 676, 1100, 1787
Tsp45I GTSAC 4 cut(s) 250, 814, 832, 839
TspDTI ATGAA 3 cut(s) 1083, 1414, 1742
TspGWI ACGGA 4 cut(s) 229, 238, 408, 1292
TspRI CASTG 4 cut(s) 575, 769, 1192, 1740
Tth111I GACNNNGTC 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 366, 1226
XapI RAATTY 4 cut(s) 152, 497, 752, 1421
XceI RCATGY 4 cut(s) 398, 598, 847, 1921
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 4 cut(s) 942, 977, 1257, 1692
Zsp2I ATGCAT 2 cut(s) 777, 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.