Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009575

Physical Location & Seq

Genomic Coordinates Reverse (-)

64032169 .. 64032553

Gene Structure 385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0464400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGCAAACTCCTCACAGCCCGTGATTTCAAGATCAAGTCATTCATGGGGATGTTCCGCAACGCTTGGAGGATTAATGGAATGTTGCAAGTGGAGGAAGCGGAGGAACAAAGGGTGCTCTTCACGCTGTCGGACCTGGCTGATCGGGTTCGGGTCTGGCGCGGTGTACCATGGGGGGATCCCGCCGGCGTTCCGGTAGGAAAGAGTCATGACTATGATAGGATACACACTGGGGGATTTCCAGGAGATCGAGAAGAATGCCAAGAAGGCTGGGAAGCTTCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0061

Protein Analysis

95

Amino Acids

10.86

Weight (kDa)

5.35

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13030
fragaria_vesca	FvH4_3g43840 FvH4_3g45150
malus_domestica	MD03G1018700.v1.1 MD11G1020700.v1.1
prunus_persica	Prupe.6G017800_v2.0.a1 Prupe.6G017800_v2.0.a1
pyrus_communis	pycom03g01620 pycom11g01650
rosa_chinensis	RchiOBHm_Chr5g0079321
rosa_laevigata	RLG00000036811
rosa_multiflora	Rmu_sc0000607.1_g000004 Rmu_sc0002187.1_g000034
rosa_roxburghii	Rroxscaffold_1G00003410 Rroxscaffold_1G00003610
rosa_rugosa	Rorug05G0464400
rosa_samantha	Rh5AG516500 Rh5BG540200 Rh5CG563200 Rh5DG550600
rosa_wichuraiana	Rw0G005200 Rw5G048060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AciI	CCGC	4 cut(s)	58, 101, 162, 183
AclWI	GGATC	2 cut(s)	173, 186
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	135, 241
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	173, 186
AseI	ATTAAT	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	120
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	2 cut(s)	137, 243
BciVI	GTATCC	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	267
Bme1390I	CCNGG	2 cut(s)	137, 243
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	137, 243
BmrI	ACTGGG	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	137, 243
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	186, 194
BsmI	GAATGC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	33, 142, 178, 247
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	4 cut(s)	58, 101, 162, 183
BspFNI	CGCG	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	2 cut(s)	173, 186
BspQI	GCTCTTC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	4 cut(s)	33, 142, 178, 247
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	137, 243
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	187
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	4 cut(s)	36, 145, 181, 250
BstMBI	GATC	4 cut(s)	33, 142, 178, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 267
BstNI	CCWGG	2 cut(s)	137, 243
BstSCI	CCNGG	2 cut(s)	135, 241
BstUI	CGCG	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	187
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	3 cut(s)	46, 171, 209
CviJI	RGCY	4 cut(s)	20, 140, 270, 278
CviKI_1	RGCY	4 cut(s)	20, 140, 270, 278
CviQI	GTAC	1 cut(s)	167
DpnI	GATC	4 cut(s)	35, 144, 180, 249
DpnII	GATC	4 cut(s)	33, 142, 178, 247
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	135, 241
EcoT14I	CCWWGG	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	3 cut(s)	49, 174, 212
FaiI	YATR	4 cut(s)	47, 172, 210, 216
FatI	CATG	3 cut(s)	45, 170, 208
FauI	CCCGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	64
GlaI	GCGC	1 cut(s)	161
GsaI	CCCAGC	1 cut(s)	274
HapII	CCGG	2 cut(s)	186, 194
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	49, 174, 212
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	186, 194
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	133, 283
Hpy188III	TCNNGA	3 cut(s)	31, 209, 251
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 267
Hsp92II	CATG	3 cut(s)	49, 174, 212
HspAI	GCGC	1 cut(s)	160
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	33, 142, 178, 247
LguI	GCTCTTC	1 cut(s)	125
LpnPI	CCDG	9 cut(s)	122, 142, 149, 199, 207, 216, 228, 255, 256
MalI	GATC	4 cut(s)	35, 144, 180, 249
MboI	GATC	4 cut(s)	33, 142, 178, 247
MboII	GAAGA	2 cut(s)	112, 266
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	4 cut(s)	23, 63, 88, 97
MreI	CGCCGGCG	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	185
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	50, 213
MspI	CCGG	2 cut(s)	186, 194
MspR9I	CCNGG	2 cut(s)	137, 243
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	2 cut(s)	137, 243
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	124, 267
NaeI	GCCGGC	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	4 cut(s)	33, 142, 178, 247
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	3 cut(s)	49, 174, 212
NlaIV	GGNNCC	1 cut(s)	180
PagI	TCATGA	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	263
PdiI	GCCGGC	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	241
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	135, 241
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	2 cut(s)	135, 241
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	2 cut(s)	50, 213
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	4 cut(s)	33, 142, 178, 247
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	137, 243
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	2 cut(s)	138, 280
SgrAI	CRCCGGYG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	50, 213
SsiI	CCGC	4 cut(s)	58, 101, 162, 183
StyD4I	CCNGG	2 cut(s)	135, 241
StyI	CCWWGG	1 cut(s)	170
TaqI	TCGA	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	133
VspI	ATTAAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.