FvH4_3g45150

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009575
Physical Location & Seq
Forward (+)
37535890 .. 37538641
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45150.t1

Sequence Viewer

Length: 813 bp
ATGATCCTCAGCTCATTGCCTGGTCACAGTCGGTTGCTGAATTGCTTGAATTGGATTCTCAAGAGTCACCCTATGCTCAGTGCCATGGAGGACATCAGTTCGGCATGTGAGTGGGACAGTTGGGAGACGGTCAGGCTATTACACTTGGGGGAGGTTCTTAACTCTAAATCTGAAAGGTGGGGACTGCAGCTCAAAGGTGCTGGGAAGACCCCTTACAGCCTGTTTGCCGATGGCCTTGCTGTGCTTCGTAGTAGCATTCAGGAATTTCTCTGCAGTGAAGCAATGCATAGTCTTGTTATTCCAACGACCCGTGCTCTATGTCTTGTGACAACTGGAAAACTTGTCACCCGTGACATGTTCTATGGGGAAACAGAAGACCTTGCCATTGTTTGTACTCTAGCAGACTATGCCATTAGGCATCACTTCCCACATATAGAGAACCCGAATAGAAGTGAGAGTTTATCGTTCAATGCAGGGAACGAAGACCATGAAGTCGTTGATTTAACGTCTAACAAGCATGCAGCCTGGGTGGTGGAGATTGCTGAACGTACTGCGTCCTTGGTTGCCAAATGGCAGGGGGTCAGTTTTGCTCATGGTGTGTTGAACACTGACAATATGAGCATTTTGGGCCTCACCATTGATTATGGTCCTTTTGGATTTCTTGATGCATTTGATCCAAGTTACACCCCCGGTACAACGGATCTTCCTGAGAGGAGATATTGTTTTGCAAATTGGCTTATGGAATATTATGCATTGTCATCTGCCAAGTTGATAAATGAGGAGGCAAACTATGCAATGGAAAAGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

271

Amino Acids

30.21

Weight (kDa)

5.24

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelO PF02696 45 - 244 6.6e-55 Protein adenylyltransferase SelO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 491
AclWI GGATC 2 cut(s) 668, 708
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 3 cut(s) 394, 550, 694
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 3 cut(s) 49, 469, 604
AjnI CCWGG 2 cut(s) 19, 524
AluBI AGCT 2 cut(s) 12, 190
AluI AGCT 2 cut(s) 12, 190
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 2 cut(s) 668, 708
AoxI GGCC 2 cut(s) 232, 628
ApeKI GCWGC 2 cut(s) 187, 521
ApoI RAATTY 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 628, 647
AsuC2I CCSGG 1 cut(s) 690
AsuHPI GGTGA 3 cut(s) 59, 337, 625
AvaII GGWCC 1 cut(s) 647
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BbsI GAAGAC 3 cut(s) 212, 381, 489
Bbv12I GWGCWC 1 cut(s) 316
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 199, 533
BccI CCATC 1 cut(s) 224
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 2 cut(s) 21, 526
BcnI CCSGG 1 cut(s) 690
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 2 cut(s) 185, 271
BisI GCNGC 2 cut(s) 188, 522
BlsI GCNGC 2 cut(s) 189, 523
Bme1390I CCNGG 3 cut(s) 21, 526, 690
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 2 cut(s) 628, 647
BmrFI CCNGG 3 cut(s) 21, 526, 690
BmsI GCATC 2 cut(s) 427, 655
BpiI GAAGAC 3 cut(s) 212, 381, 489
Bpu10I CCTNAGC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 690
BsaJI CCNNGG 4 cut(s) 84, 525, 558, 688
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 3 cut(s) 14, 288, 801
BseBI CCWGG 2 cut(s) 21, 526
BseDI CCNNGG 4 cut(s) 84, 525, 558, 688
BseMI GCAATG 3 cut(s) 14, 288, 801
BseMII CTCAG 3 cut(s) 22, 91, 699
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 2 cut(s) 727, 794
BseXI GCAGC 2 cut(s) 199, 533
BseYI CCCAGC 1 cut(s) 200
BshFI GGCC 2 cut(s) 234, 630
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 690
BslFI GGGAC 2 cut(s) 128, 195
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 128, 195
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 2 cut(s) 234, 630
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 3 cut(s) 3, 673, 700
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 2 cut(s) 234, 630
BspCNI CTCAG 3 cut(s) 21, 90, 700
BspMAI CTGCAG 2 cut(s) 189, 275
BspPI GGATC 2 cut(s) 668, 708
BsrDI GCAATG 3 cut(s) 14, 288, 801
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 4 cut(s) 84, 525, 558, 688
BssMI GATC 3 cut(s) 3, 673, 700
BssT1I CCWWGG 2 cut(s) 84, 558
Bst2UI CCWGG 2 cut(s) 21, 526
Bst4CI ACNGT 3 cut(s) 29, 119, 130
BstAPI GCANNNNNTGC 2 cut(s) 407, 791
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 3 cut(s) 8, 77, 708
BstDSI CCRYGG 1 cut(s) 84
BstKTI GATC 3 cut(s) 6, 676, 703
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 3, 673, 700
BstMWI GCNNNNNNNGC 3 cut(s) 407, 627, 791
BstNI CCWGG 2 cut(s) 21, 526
BstNSI RCATGY 3 cut(s) 108, 358, 521
BstSCI CCNGG 3 cut(s) 19, 524, 688
BstSFI CTRYAG 2 cut(s) 185, 271
BstV1I GCAGC 2 cut(s) 199, 533
BstV2I GAAGAC 3 cut(s) 212, 381, 489
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BsuRI GGCC 2 cut(s) 234, 630
BtgI CCRYGG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 3 cut(s) 85, 280, 606
Cac8I GCNNGC 1 cut(s) 519
Cfr13I GGNCC 2 cut(s) 628, 647
CseI GACGC 1 cut(s) 543
Csp6I GTAC 3 cut(s) 393, 549, 693
CviAII CATG 6 cut(s) 85, 105, 355, 488, 518, 593
CviJI RGCY 8 cut(s) 12, 136, 190, 219, 234, 524, 630, 736
CviKI_1 RGCY 8 cut(s) 12, 136, 190, 219, 234, 524, 630, 736
CviQI GTAC 3 cut(s) 393, 549, 693
DdeI CTNAG 3 cut(s) 8, 77, 708
DpnI GATC 3 cut(s) 5, 675, 702
DpnII GATC 3 cut(s) 3, 673, 700
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
Eco130I CCWWGG 2 cut(s) 84, 558
Eco47I GGWCC 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 19, 524
EcoT14I CCWWGG 2 cut(s) 84, 558
EcoT22I ATGCAT 3 cut(s) 288, 670, 754
ErhI CCWWGG 2 cut(s) 84, 558
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 6 cut(s) 88, 108, 358, 491, 521, 596
FaqI GGGAC 2 cut(s) 128, 195
FatI CATG 6 cut(s) 84, 104, 354, 487, 517, 592
Fnu4HI GCNGC 2 cut(s) 188, 522
Fsp4HI GCNGC 2 cut(s) 188, 522
FspBI CTAG 1 cut(s) 398
GluI GCNGC 2 cut(s) 188, 522
GsaI CCCAGC 1 cut(s) 204
HaeIII GGCC 2 cut(s) 234, 630
HapII CCGG 1 cut(s) 690
HgaI GACGC 1 cut(s) 543
Hin1II CATG 6 cut(s) 88, 108, 358, 491, 521, 596
HinfI GANTC 2 cut(s) 55, 64
HpaII CCGG 1 cut(s) 690
HphI GGTGA 3 cut(s) 59, 337, 625
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 4 cut(s) 61, 260, 662, 707
HpyCH4III ACNGT 3 cut(s) 29, 119, 130
HpyCH4IV ACGT 2 cut(s) 506, 547
HpyCH4V TGCA 9 cut(s) 187, 273, 286, 473, 521, 668, 728, 752, 794
HpyF10VI GCNNNNNNNGC 3 cut(s) 407, 627, 791
HpyF3I CTNAG 3 cut(s) 8, 77, 708
HpySE526I ACGT 2 cut(s) 506, 547
Hsp92II CATG 6 cut(s) 88, 108, 358, 491, 521, 596
Kzo9I GATC 3 cut(s) 3, 673, 700
Lsp1109I GCAGC 2 cut(s) 199, 533
LweI GCATC 2 cut(s) 427, 655
MaeI CTAG 1 cut(s) 398
MaeII ACGT 2 cut(s) 506, 547
MaeIII GTNAC 6 cut(s) 23, 65, 325, 343, 350, 680
MalI GATC 3 cut(s) 5, 675, 702
MboI GATC 3 cut(s) 3, 673, 700
MboII GAAGA 4 cut(s) 217, 386, 494, 695
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 4 cut(s) 40, 49, 263, 730
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 7 cut(s) 17, 82, 145, 641, 705, 772, 775
Mph1103I ATGCAT 3 cut(s) 288, 670, 754
MseI TTAA 2 cut(s) 159, 503
MslI CAYNNNNRTG 1 cut(s) 109
MspI CCGG 1 cut(s) 690
MspR9I CCNGG 3 cut(s) 21, 526, 690
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 2 cut(s) 21, 526
MwoI GCNNNNNNNGC 3 cut(s) 407, 627, 791
NciI CCSGG 1 cut(s) 690
NcoI CCATGG 1 cut(s) 84
NdeII GATC 3 cut(s) 3, 673, 700
NlaIII CATG 6 cut(s) 88, 108, 358, 491, 521, 596
NmuCI GTSAC 5 cut(s) 23, 65, 325, 343, 350
NsiI ATGCAT 3 cut(s) 288, 670, 754
NspI RCATGY 3 cut(s) 108, 358, 521
PaeI GCATGC 1 cut(s) 521
PciI ACATGT 1 cut(s) 354
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 189, 523
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PscI ACATGT 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 19, 524
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 2 cut(s) 19, 524
PspPI GGNCC 2 cut(s) 628, 647
PstI CTGCAG 2 cut(s) 189, 275
PsuI RGATCY 1 cut(s) 700
RsaI GTAC 3 cut(s) 394, 550, 694
RsaNI GTAC 3 cut(s) 393, 549, 693
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 2 cut(s) 159, 503
SatI GCNGC 2 cut(s) 188, 522
Sau3AI GATC 3 cut(s) 3, 673, 700
Sau96I GGNCC 2 cut(s) 628, 647
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 3 cut(s) 21, 526, 690
SduI GDGCHC 1 cut(s) 316
SetI ASST 8 cut(s) 14, 156, 179, 192, 199, 381, 509, 550
SfaNI GCATC 2 cut(s) 427, 655
SfcI CTRYAG 2 cut(s) 185, 271
SinI GGWCC 1 cut(s) 647
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
SphI GCATGC 1 cut(s) 521
Sse9I AATT 4 cut(s) 40, 49, 263, 730
SspI AATATT 1 cut(s) 746
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 3 cut(s) 19, 524, 688
StyI CCWWGG 2 cut(s) 84, 558
TaaI ACNGT 3 cut(s) 29, 119, 130
TaiI ACGT 2 cut(s) 509, 550
TasI AATT 4 cut(s) 40, 49, 263, 730
TatI WGTACW 1 cut(s) 392
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 159, 503
Tru9I TTAA 2 cut(s) 159, 503
TscAI CASTG 3 cut(s) 85, 280, 613
TseFI GTSAC 5 cut(s) 23, 65, 325, 343, 350
TseI GCWGC 2 cut(s) 187, 521
Tsp45I GTSAC 5 cut(s) 23, 65, 325, 343, 350
TspDTI ATGAA 1 cut(s) 504
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 3 cut(s) 85, 280, 613
VpaK11BI GGWCC 1 cut(s) 647
XapI RAATTY 1 cut(s) 263
XceI RCATGY 3 cut(s) 108, 358, 521
XspI CTAG 1 cut(s) 398
Zsp2I ATGCAT 3 cut(s) 288, 670, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.