RchiOBHm_Chr5g0079321

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0009575
Physical Location & Seq
Reverse (-)
84958864 .. 84964268
5405 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35374

Sequence Viewer

Length: 1935 bp
ATGCAAATCCTTTCGCATTTCTCTTCCAAAGCCTCCTTACCTTCTTCTCTCCTTCCCTCTCTCACCTCCGCCCTCATCTTCCGCCGTCGCCCCCCGAATTTCCCCTTTTACCCCTCCACTCCCTTCAAATTTCCCACCCTCGCATGCCACCTCAGCTCCGCCGGCCATAGCCCCCAACAATCAGCAGCTCCCATGGACTCGCCGCCGCCACCGACAGAGGCCTCCGTCGAAGCCGTCACGCGCGATTTGCGCAACCAGAGCTTGGCCGCCGACGGTGGGAATAACGCGCCGAGAGCGCGGTTGAAGCTTGAAGATCTGAACTGGGATAACTCGTTTGTTAGAGAGTTGCCTGGTGATCCCAGGACCGATACGTTTCCACGAGAGGTGTTGCGTGCCTGTTTTACAAAAGTAACCCCGTCAGCTCAAGTTGATGATCCTCAGCTCGTTGCCTGGTCAGAGTTGGTTGCTGAGTTGTTTGAATTGGATCCTCAAGAATTTGAAAGGCCAGATTTCCCCCTTTTATTCTCTGGAGCGTCTCCTTTAGTTGGATCGTCACCCTATGCTCAGTGCTATGGAGGACATCAGTTTGGCATGTGGGCGGGACAGTTGGGAGATGGTCGGGCTATTACACTCGGGGAGGTTCTTAACTCTAAATCTGAAAGGTGGGAAATGCAGCTTAAAGGTGCTGGAAAGACCCCTTACAGCCGGTTTGCAGATGGCCTTGCTGTGCTTCGTAGTAGCGTCCGGGAATTCCTCTGCAGTGAAGCAATGCATAGTCTTGGAATTCCAACAACTCGTGCTCTATGTCTTGTGACAACAGGAAAACTTGTCACCCGTGACATGTTTTATGATGGCAATCCAAAGGAGGAGCCAGGTGCAATTGTTTGTAGGGTTGCTCCATCCTTCCTCCGCTTTGGATCCTACCAAATACACGCCTCTAGGGAAAATGAGGACCTTGCCATTGTTCGTACTCTAGCAGATTATACCATTAGGCATCACTTCCCTCATATAGAGAACATGAGTAAAAGTGAGAGTTTGTCTTTCAGTACAGGCAATGATGAACATTCAGTCGTGGATCTAACGTCTAACAAGTATGCAGCCTGGGTAGTGGAGGTTGCTGAACGAACTGCGTCCTTGGTTGCCAAATGGCAGGGGGTTGGTTTTACTCATGGTGTGTTGAACACTGACAATATGAGTATTTTGGGCCTCACCATTGATTATGGTCCTTTTGGATTTCTGGATGCATTCGATCCAAGTTACACTCCGAATACAACTGATCTTCCTGGGAGGAGATATTGTTTTGCAAATCAACCTGATATTGGCTTATGGAATATTATGCAATTAACCAGAACCTTGTCATCTGCCGAGTTGATAAATGAGAAGGAGGCAAACTATGCAATGGAAAGATACGGAACCAGATTCATGGATGATTATCAAGCTATAATGACAAAAAAACTTGGTCTCCCCAAGTATGTCAAACAGTTGATTAGTAAACTTCTTAATAATATGGCCGTTGACAAAGTGGATTACACAAATTTTTTCCGGTTGCTTTCCAATATCAAAGCTGATCCCGGCATCCCAGATGAGGAGTTGTTAAACCCACTAAAGGCTGTTTTATTAGATATTGGCCAGGAGCGGAAGGAGGCATGGATCAGCTGGGTGAGAATCTACATAGAGGAGCTATCTGCTAGTGGCATCCCAGATGAGGAGAGGAAGGCCTCAATGAATGCGGTGAACCCTAAATATGTTCTCAGAAACTACTTATGCCAGAGTGCTATTGATGCAGCTGAACAAGGTGATTTTGGAGAGGTTCAAAGGGTGCTTAAAGTAATGGAACGACCATTTGATGAGCAACCAGGAATGGAAAAATATGCTCGCTTGCCCCCAGCCTGGGCTTATCGGCCTGGAGTTTGCATGCTTTCTTGCTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

644

Amino Acids

71.8

Weight (kDa)

5.56

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelO PF02696 132 - 609 3.6e-123 Protein adenylyltransferase SelO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 262
AccBSI CCGCTC 1 cut(s) 1636
AccII CGCG 4 cut(s) 241, 243, 287, 298
AcoI YGGCCR 4 cut(s) 163, 264, 1509, 1627
AcsI RAATTY 6 cut(s) 97, 128, 494, 749, 783, 1534
AfaI GTAC 2 cut(s) 970, 1048
AfiI CCNNNNNNNGG 9 cut(s) 262, 276, 545, 1319, 1585, 1606, 1705, 1890, 1891
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 7 cut(s) 127, 304, 311, 479, 500, 1180, 1814
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 2 cut(s) 540, 1466
Ama87I CYCGRG 1 cut(s) 632
ApeKI GCWGC 4 cut(s) 185, 673, 1097, 1784
ApoI RAATTY 6 cut(s) 97, 128, 494, 749, 783, 1534
AspLEI GCGC 4 cut(s) 243, 252, 289, 298
AspS9I GGNCC 4 cut(s) 363, 952, 1204, 1223
AsuC2I CCSGG 2 cut(s) 746, 1572
AsuHPI GGTGA 8 cut(s) 55, 365, 546, 823, 1201, 1672, 1744, 1808
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 3 cut(s) 363, 952, 1223
BalI TGGCCA 1 cut(s) 1629
BamHI GGATCC 2 cut(s) 484, 917
BauI CACGAG 2 cut(s) 378, 795
Bbv12I GWGCWC 1 cut(s) 802
BbvCI CCTCAGC 2 cut(s) 152, 438
BbvI GCAGC 4 cut(s) 197, 685, 1109, 1796
BccI CCATC 4 cut(s) 608, 710, 845, 907
BceAI ACGGC 3 cut(s) 69, 218, 1496
BcnI CCSGG 2 cut(s) 746, 1572
BcoDI GTCTC 2 cut(s) 540, 1466
BfaI CTAG 3 cut(s) 939, 974, 1689
BfmI CTRYAG 1 cut(s) 757
BglII AGATCT 1 cut(s) 313
BisI GCNGC 7 cut(s) 186, 203, 206, 267, 674, 1098, 1785
BlsI GCNGC 7 cut(s) 187, 204, 207, 268, 675, 1099, 1786
Bme18I GGWCC 3 cut(s) 363, 952, 1223
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 4 cut(s) 363, 952, 1204, 1223
BmiI GGNNCC 4 cut(s) 486, 870, 919, 1414
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 5 cut(s) 1003, 1231, 1584, 1704, 1771
BmuI ACTGGG 1 cut(s) 331
BpmI CTGGAG 2 cut(s) 549, 1926
Bpu10I CCTNAGC 2 cut(s) 152, 438
BpuEI CTTGAG 2 cut(s) 408, 474
BpuMI CCSGG 2 cut(s) 746, 1572
BsaBI GATNNNNATC 2 cut(s) 855, 1431
BsaI GGTCTC 1 cut(s) 1466
BsaJI CCNNGG 6 cut(s) 192, 359, 1101, 1134, 1283, 1890
BsaWI WCCGGW 1 cut(s) 1542
BsaXI ACNNNNNCTCC 6 cut(s) 140, 170, 1282, 1312, 1446, 1476
Bsc4I CCNNNNNNNGG 9 cut(s) 262, 276, 545, 1319, 1585, 1606, 1705, 1890, 1891
Bse118I RCCGGY 2 cut(s) 161, 705
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 3 cut(s) 774, 1060, 1404
Bse8I GATNNNNATC 2 cut(s) 855, 1431
BseDI CCNNGG 6 cut(s) 192, 359, 1101, 1134, 1283, 1890
BseGI GGATG 5 cut(s) 899, 1246, 1432, 1575, 1695
BseJI GATNNNNATC 2 cut(s) 855, 1431
BseLI CCNNNNNNNGG 9 cut(s) 262, 276, 545, 1319, 1585, 1606, 1705, 1890, 1891
BseMI GCAATG 3 cut(s) 774, 1060, 1404
BseMII CTCAG 5 cut(s) 166, 452, 459, 578, 1765
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 5 cut(s) 881, 1303, 1601, 1691, 1721
BseXI GCAGC 4 cut(s) 197, 685, 1109, 1796
BseYI CCCAGC 2 cut(s) 1656, 1885
Bsh1236I CGCG 4 cut(s) 241, 243, 287, 298
BsiHKAI GWGCWC 1 cut(s) 802
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 5 cut(s) 162, 706, 745, 1543, 1572
BslFI GGGAC 1 cut(s) 615
BslI CCNNNNNNNGG 9 cut(s) 262, 276, 545, 1319, 1585, 1606, 1705, 1890, 1891
BsmAI GTCTC 2 cut(s) 540, 1466
BsmBI CGTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 615
BsmI GAATGC 2 cut(s) 1244, 1732
Bso31I GGTCTC 1 cut(s) 1466
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 802
Bsp19I CCATGG 1 cut(s) 192
BspCNI CTCAG 5 cut(s) 165, 451, 460, 577, 1764
BspFNI CGCG 4 cut(s) 241, 243, 287, 298
BspHI TCATGA 1 cut(s) 1931
BspLI GGNNCC 4 cut(s) 486, 870, 919, 1414
BspMAI CTGCAG 1 cut(s) 761
BspTNI GGTCTC 1 cut(s) 1466
BsrBI CCGCTC 1 cut(s) 1636
BsrDI GCAATG 3 cut(s) 774, 1060, 1404
BsrFI RCCGGY 2 cut(s) 161, 705
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 2 cut(s) 161, 705
BssECI CCNNGG 6 cut(s) 192, 359, 1101, 1134, 1283, 1890
BssSI CACGAG 2 cut(s) 378, 795
BssT1I CCWWGG 2 cut(s) 192, 1134
Bst2BI CACGAG 2 cut(s) 378, 795
Bst4CI ACNGT 3 cut(s) 275, 606, 1482
Bst6I CTCTTC 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 1394
BstC8I GCNNGC 6 cut(s) 145, 163, 393, 1876, 1880, 1916
BstDEI CTNAG 5 cut(s) 152, 438, 468, 564, 1751
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 5 cut(s) 899, 1246, 1432, 1575, 1695
BstFNI CGCG 4 cut(s) 241, 243, 287, 298
BstHHI GCGC 4 cut(s) 243, 252, 289, 298
BstMAI GTCTC 2 cut(s) 540, 1466
BstNSI RCATGY 4 cut(s) 147, 595, 844, 1918
BstSFI CTRYAG 1 cut(s) 757
BstUI CGCG 4 cut(s) 241, 243, 287, 298
BstV1I GCAGC 4 cut(s) 197, 685, 1109, 1796
BstX2I RGATCY 4 cut(s) 313, 484, 917, 1075
BstXI CCANNNNNNTGG 1 cut(s) 1423
BstYI RGATCY 4 cut(s) 313, 484, 917, 1075
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 5 cut(s) 899, 1246, 1432, 1575, 1695
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 3 cut(s) 572, 766, 1182
Cac8I GCNNGC 6 cut(s) 145, 163, 393, 1876, 1880, 1916
CciI TCATGA 1 cut(s) 1931
CfoI GCGC 4 cut(s) 243, 252, 289, 298
Cfr10I RCCGGY 2 cut(s) 161, 705
Cfr13I GGNCC 4 cut(s) 363, 952, 1204, 1223
CseI GACGC 3 cut(s) 522, 730, 1119
Csp6I GTAC 2 cut(s) 969, 1047
CviQI GTAC 2 cut(s) 969, 1047
DdeI CTNAG 5 cut(s) 152, 438, 468, 564, 1751
EaeI YGGCCR 4 cut(s) 163, 264, 1509, 1627
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
EciI GGCGGA 3 cut(s) 58, 71, 148
Eco130I CCWWGG 2 cut(s) 192, 1134
Eco147I AGGCCT 2 cut(s) 221, 1718
Eco31I GGTCTC 1 cut(s) 1466
Eco47I GGWCC 3 cut(s) 363, 952, 1223
Eco88I CYCGRG 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 952
EcoRI GAATTC 2 cut(s) 749, 783
EcoT14I CCWWGG 2 cut(s) 192, 1134
EcoT22I ATGCAT 2 cut(s) 774, 1246
ErhI CCWWGG 2 cut(s) 192, 1134
Esp3I CGTCTC 1 cut(s) 540
FaqI GGGAC 1 cut(s) 615
FauI CCCGC 1 cut(s) 592
Fnu4HI GCNGC 7 cut(s) 186, 203, 206, 267, 674, 1098, 1785
FokI GGATG 5 cut(s) 886, 1253, 1439, 1562, 1682
Fsp4HI GCNGC 7 cut(s) 186, 203, 206, 267, 674, 1098, 1785
FspBI CTAG 3 cut(s) 939, 974, 1689
FspI TGCGCA 1 cut(s) 251
GlaI GCGC 4 cut(s) 242, 251, 288, 297
GluI GCNGC 7 cut(s) 186, 203, 206, 267, 674, 1098, 1785
GsaI CCCAGC 2 cut(s) 1660, 1889
GsuI CTGGAG 2 cut(s) 549, 1926
HapII CCGG 5 cut(s) 162, 706, 745, 1543, 1572
HgaI GACGC 3 cut(s) 522, 730, 1119
HhaI GCGC 4 cut(s) 243, 252, 289, 298
Hin6I GCGC 4 cut(s) 241, 250, 287, 296
HinP1I GCGC 4 cut(s) 241, 250, 287, 296
HincII GTYRAC 1 cut(s) 1516
HindII GTYRAC 1 cut(s) 1516
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 3 cut(s) 197, 1419, 1665
HpaII CCGG 5 cut(s) 162, 706, 745, 1543, 1572
HphI GGTGA 8 cut(s) 55, 365, 546, 823, 1201, 1672, 1744, 1808
Hpy166II GTNNAC 3 cut(s) 1493, 1516, 1735
Hpy188I TCNGA 5 cut(s) 318, 457, 658, 1266, 1754
Hpy188III TCNNGA 4 cut(s) 491, 528, 1238, 1932
Hpy8I GTNNAC 3 cut(s) 1493, 1516, 1735
Hpy99I CGWCG 3 cut(s) 90, 230, 275
HpyAV CCTTC 7 cut(s) 51, 62, 133, 913, 1375, 1633, 1708
HpyCH4III ACNGT 3 cut(s) 275, 606, 1482
HpyCH4IV ACGT 2 cut(s) 371, 1082
HpyF3I CTNAG 5 cut(s) 152, 438, 468, 564, 1751
HpySE526I ACGT 2 cut(s) 371, 1082
HspAI GCGC 4 cut(s) 241, 250, 287, 296
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
LmnI GCTCC 7 cut(s) 161, 193, 530, 868, 901, 1633, 1678
Lsp1109I GCAGC 4 cut(s) 197, 685, 1109, 1796
LweI GCATC 5 cut(s) 1003, 1231, 1584, 1704, 1771
MaeI CTAG 3 cut(s) 939, 974, 1689
MaeII ACGT 2 cut(s) 371, 1082
MaeIII GTNAC 7 cut(s) 235, 409, 552, 811, 829, 836, 1256
MbiI CCGCTC 1 cut(s) 1636
MboII GAAGA 5 cut(s) 15, 36, 70, 323, 1271
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 4 cut(s) 313, 484, 917, 1075
MhlI GDGCHC 1 cut(s) 802
MlsI TGGCCA 1 cut(s) 1629
MluCI AATT 9 cut(s) 97, 128, 479, 494, 749, 783, 879, 1340, 1534
MluNI TGGCCA 1 cut(s) 1629
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 2 cut(s) 526, 812
Mox20I TGGCCA 1 cut(s) 1629
Mph1103I ATGCAT 2 cut(s) 774, 1246
MroNI GCCGGC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 1629
MseI TTAA 6 cut(s) 645, 678, 1343, 1500, 1595, 1824
Msp20I TGGCCA 1 cut(s) 1629
MspA1I CMGCKG 2 cut(s) 1656, 1787
MspI CCGG 5 cut(s) 162, 706, 745, 1543, 1572
MunI CAATTG 1 cut(s) 879
Mva1269I GAATGC 2 cut(s) 1244, 1732
MvnI CGCG 4 cut(s) 241, 243, 287, 298
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 2 cut(s) 746, 1572
NcoI CCATGG 1 cut(s) 192
NgoMIV GCCGGC 1 cut(s) 161
NlaIV GGNNCC 4 cut(s) 486, 870, 919, 1414
NmeAIII GCCGAG 2 cut(s) 315, 1390
NmuCI GTSAC 5 cut(s) 235, 552, 811, 829, 836
NsbI TGCGCA 1 cut(s) 251
NsiI ATGCAT 2 cut(s) 774, 1246
NspI RCATGY 4 cut(s) 147, 595, 844, 1918
PaeI GCATGC 2 cut(s) 147, 1918
PagI TCATGA 1 cut(s) 1931
PceI AGGCCT 2 cut(s) 221, 1718
PciI ACATGT 1 cut(s) 840
PctI GAATGC 2 cut(s) 1244, 1732
PdiI GCCGGC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 1419, 1665
PflMI CCANNNNNTGG 1 cut(s) 262
PfoI TCCNGGA 1 cut(s) 744
PkrI GCNGC 7 cut(s) 187, 204, 207, 268, 675, 1099, 1786
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 952
PscI ACATGT 1 cut(s) 840
Psp5II RGGWCCY 1 cut(s) 952
PspFI CCCAGC 2 cut(s) 1656, 1885
PspN4I GGNNCC 4 cut(s) 486, 870, 919, 1414
PspPI GGNCC 4 cut(s) 363, 952, 1204, 1223
PspPPI RGGWCCY 1 cut(s) 952
PstI CTGCAG 1 cut(s) 761
PsuI RGATCY 4 cut(s) 313, 484, 917, 1075
PvuII CAGCTG 2 cut(s) 1656, 1787
RsaI GTAC 2 cut(s) 970, 1048
RsaNI GTAC 2 cut(s) 969, 1047
SaqAI TTAA 6 cut(s) 645, 678, 1343, 1500, 1595, 1824
SatI GCNGC 7 cut(s) 186, 203, 206, 267, 674, 1098, 1785
Sau96I GGNCC 4 cut(s) 363, 952, 1204, 1223
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 802
SfaNI GCATC 5 cut(s) 1003, 1231, 1584, 1704, 1771
SfcI CTRYAG 1 cut(s) 757
SinI GGWCC 3 cut(s) 363, 952, 1223
SmlI CTYRAG 2 cut(s) 423, 489
SmoI CTYRAG 2 cut(s) 423, 489
SphI GCATGC 2 cut(s) 147, 1918
Sse9I AATT 9 cut(s) 97, 128, 479, 494, 749, 783, 879, 1340, 1534
SseBI AGGCCT 2 cut(s) 221, 1718
SspI AATATT 1 cut(s) 1333
SspMI CTAG 3 cut(s) 939, 974, 1689
StuI AGGCCT 2 cut(s) 221, 1718
StyI CCWWGG 2 cut(s) 192, 1134
TaaI ACNGT 3 cut(s) 275, 606, 1482
TaiI ACGT 2 cut(s) 374, 1085
TaqI TCGA 2 cut(s) 228, 1248
TaqII GACCGA 1 cut(s) 380
TasI AATT 9 cut(s) 97, 128, 479, 494, 749, 783, 879, 1340, 1534
TatI WGTACW 1 cut(s) 1046
TauI GCSGC 3 cut(s) 205, 208, 269
TfiI GAWTC 2 cut(s) 1419, 1665
Tru1I TTAA 6 cut(s) 645, 678, 1343, 1500, 1595, 1824
Tru9I TTAA 6 cut(s) 645, 678, 1343, 1500, 1595, 1824
TscAI CASTG 3 cut(s) 572, 766, 1189
TseFI GTSAC 5 cut(s) 235, 552, 811, 829, 836
TseI GCWGC 4 cut(s) 185, 673, 1097, 1784
Tsp45I GTSAC 5 cut(s) 235, 552, 811, 829, 836
TspDTI ATGAA 3 cut(s) 1074, 1411, 1739
TspGWI ACGGA 2 cut(s) 214, 1425
TspRI CASTG 3 cut(s) 572, 766, 1189
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 3 cut(s) 363, 952, 1223
XapI RAATTY 6 cut(s) 97, 128, 494, 749, 783, 1534
XceI RCATGY 4 cut(s) 147, 595, 844, 1918
XspI CTAG 3 cut(s) 939, 974, 1689
Zsp2I ATGCAT 2 cut(s) 774, 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.