Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017639

Physical Location & Seq

Genomic Coordinates Reverse (-)

37604333 .. 37606097

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45281.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGGAGCCTCAACCTGTTCTGCAAGCTCCCAGTCCTTGATTGAACAGGAACAACAACTAGAATCACAGCCTCAAATTACCACCAAGAATCCCAAAAAACTTGCCCTTATCCCACTAGTCTTCCTAATCTATTTTGAAGTCTCTGGAGGTCCTTATGGTGAAGAACCTGCAGTTGGTGCAGCTGGTCCACTCTTTGCCATTCTTGGCTTCCTCATCTTCCCATTCATATGGAGCATCCCTGAGGCCCTTGTCACCGCTGAGCTGGCAACCGCCTTCCCCGGAAATGGTGGTTTTGTCATCTGGGCACACCAAGCCTTTGGACCCTTCTGGGGATCCCTAATGGGATCTTGGAAATTCCTCAGTGGAGTCATCAATTTAGCTTCATATCCTATTCTTTGTGTGGACTATCTCAAGCTGGTAATCCCAATTTTTTCTTCAGGCCTTCCTCGATTTTTCGCTATATTTGTATCAACTATAGTGCTTTCATTTTTGAACTATTCTGGTTTGAGCATTGTTGGTTACACTGCAGTAGGTTTAGGAATACTGTCATTATGTCCATTTATAGTAATGTCTTTGGTTGCAATTCCCAAGATTGATCCTAGTAGATGGATCAGTTTGGGTCAAAAGGGTGTGGGAAAGGATTGGACTTTGTATATAAACACCTTATTCTGGAACTTGAATTTTTGGGACAATGCTAGTACATTAGCTGGTGAAGTTGAAGAACCCCAAAAGATGTACCCAATAGCACTTTTCTCAGCTGGCATTCTCACATGTTTGGGGTACATAATTCCTCTCCTAGCTGCAACTGGTGCTATTCCACTTGAACAAGAAGATTGGGTTGATGGGTATTTAGCTTCAGCTGGAGAAGTGATTGCTGGGAAATGGTTGAAATACTGGATCGAAATTGGTGCTGTTTTATCAATCATTGGACTTTTTGAAGCTCAATTAAGTAGTTGTGCATACCAGCTTTTGGGGATGGCAGACTTGGGGATTTCACCACTAATTTTTGGGTCACGGTCCAAATGGTTCAACACACCTTGGTTAGGAATTCTGATTTCAACAGCTTTTGCACTCTCCGTTTCTTACTTGGATTTCACAGACATTATATCTTCTGCCAATTTCCTATACAGTTTGGGAATGCTATTAGAATTTGCGTCTTTTCTTTGGTTAAGAGTGAAGTTTCCAGGTCTAGAAAGGCCATTTAAAGTTCCAATGGGTGTGAGAGGTTTGGTAGTCATGTGCTTGATTCCATCTGTGTTTTTGGCCTATGTTCTGGCTGTGGCTACTAAAGCTGTTTATTTGGTTAGTGCAGTGATGACTCTGTTTGGAATTGTGTGGTACTTCCTTATGAATATCTGCAAATCAAAGATGTGGTTTGAATTCAACAACGGTGAACAAAAATTGGAATACCAGTGTATGCCGCGTATCATGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

479

Amino Acids

52.54

Weight (kDa)

5.15

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	56 - 429	6.4e-32	Amino acid permease
AA_permease	PF00324	57 - 426	1.7e-08	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45281
malus_domestica	MD11G1009900.v1.1
prunus_persica	Prupe.6G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082951
rosa_laevigata	RLG00000037004
rosa_multiflora	Rmu_sc0017035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001470
rosa_rugosa	Rorug05G0481600
rosa_samantha	Rh5BG558200 Rh5CG581100 Rh5DG567000
rosa_wichuraiana	Rw5G049740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccII	CGCG	1 cut(s)	1423
AciI	CCGC	3 cut(s)	255, 270, 1421
AclWI	GGATC	6 cut(s)	327, 340, 352, 590, 617, 905
AcsI	RAATTY	5 cut(s)	353, 679, 1047, 1148, 1379
AcuI	CTGAAG	2 cut(s)	420, 840
AfaI	GTAC	4 cut(s)	700, 737, 782, 1340
AfiI	CCNNNNNNNGG	6 cut(s)	173, 284, 329, 669, 970, 1043
AflIII	ACRYGT	1 cut(s)	770
AhlI	ACTAGT	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	1183
AjuI	GAANNNNNNNTTGG	4 cut(s)	156, 188, 418, 450
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	6 cut(s)	327, 340, 352, 590, 617, 905
AoxI	GGCC	4 cut(s)	243, 439, 1196, 1263
ApeKI	GCWGC	2 cut(s)	179, 800
ApoI	RAATTY	5 cut(s)	353, 679, 1047, 1148, 1379
AspS9I	GGNCC	5 cut(s)	149, 185, 244, 320, 1017
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	5 cut(s)	170, 244, 722, 987, 1403
AvaII	GGWCC	4 cut(s)	149, 185, 320, 1017
AxyI	CCTNAGG	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	191, 787
BccI	CCATC	4 cut(s)	600, 836, 970, 1258
BcgI	CGANNNNNNTGC	2 cut(s)	890, 924
BciT130I	CCWGG	1 cut(s)	1185
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	145
BcuI	ACTAGT	1 cut(s)	115
BfaI	CTAG	6 cut(s)	59, 116, 600, 696, 797, 1190
BfmI	CTRYAG	3 cut(s)	168, 474, 525
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	3 cut(s)	180, 801, 1421
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	3 cut(s)	181, 802, 1422
Bme1390I	CCNGG	2 cut(s)	279, 1185
Bme18I	GGWCC	4 cut(s)	149, 185, 320, 1017
BmgT120I	GGNCC	5 cut(s)	149, 185, 244, 320, 1017
BmiI	GGNNCC	3 cut(s)	7, 322, 334
BmrFI	CCNGG	2 cut(s)	279, 1185
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	112
BpmI	CTGGAG	2 cut(s)	165, 882
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	277, 1037
Bsc4I	CCNNNNNNNGG	6 cut(s)	173, 284, 329, 669, 970, 1043
Bse1I	ACTGG	4 cut(s)	31, 811, 899, 1411
Bse21I	CCTNAGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	1185
BseDI	CCNNGG	2 cut(s)	277, 1037
BseGI	GGATG	2 cut(s)	234, 981
BseLI	CCNNNNNNNGG	6 cut(s)	173, 284, 329, 669, 970, 1043
BseMII	CTCAG	4 cut(s)	231, 249, 373, 768
BseNI	ACTGG	4 cut(s)	31, 811, 899, 1411
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	191, 787
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	2 cut(s)	198, 1329
Bsh1236I	CGCG	1 cut(s)	1423
BshFI	GGCC	4 cut(s)	245, 441, 1198, 1265
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	6 cut(s)	173, 284, 329, 669, 970, 1043
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	2 cut(s)	762, 1143
BsnI	GGCC	4 cut(s)	245, 441, 1198, 1265
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	5 cut(s)	332, 344, 595, 609, 897
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	255, 270, 1421
BspANI	GGCC	4 cut(s)	245, 441, 1198, 1265
BspCNI	CTCAG	4 cut(s)	232, 250, 372, 767
BspFNI	CGCG	1 cut(s)	1423
BspLI	GGNNCC	3 cut(s)	7, 322, 334
BspMAI	CTGCAG	2 cut(s)	172, 529
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	6 cut(s)	327, 340, 352, 590, 617, 905
BsrI	ACTGG	4 cut(s)	31, 811, 899, 1411
BssECI	CCNNGG	2 cut(s)	277, 1037
BssMI	GATC	5 cut(s)	332, 344, 595, 609, 897
BssT1I	CCWWGG	1 cut(s)	1037
Bst2UI	CCWGG	1 cut(s)	1185
Bst4CI	ACNGT	4 cut(s)	546, 1017, 1130, 1391
BstAPI	GCANNNNNTGC	2 cut(s)	176, 809
BstC8I	GCNNGC	3 cut(s)	25, 264, 760
BstDEI	CTNAG	4 cut(s)	240, 258, 359, 754
BstENI	CCTNNNNNAGG	1 cut(s)	1041
BstF5I	GGATG	2 cut(s)	234, 981
BstFNI	CGCG	1 cut(s)	1423
BstKTI	GATC	5 cut(s)	335, 347, 598, 612, 900
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	5 cut(s)	332, 344, 595, 609, 897
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 263, 311, 809, 1289
BstNI	CCWGG	1 cut(s)	1185
BstNSI	RCATGY	1 cut(s)	774
BstSCI	CCNGG	2 cut(s)	277, 1183
BstSFI	CTRYAG	3 cut(s)	168, 474, 525
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	1423
BstV1I	GCAGC	2 cut(s)	191, 787
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	332, 344
BstXI	CCANNNNNNTGG	2 cut(s)	228, 317
BstYI	RGATCY	2 cut(s)	332, 344
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	4 cut(s)	245, 441, 1198, 1265
BtsCI	GGATG	2 cut(s)	234, 981
BtsI	GCAGTG	2 cut(s)	522, 1317
BtsIMutI	CAGTG	4 cut(s)	367, 522, 1317, 1418
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	3 cut(s)	25, 264, 760
Cfr13I	GGNCC	5 cut(s)	149, 185, 244, 320, 1017
CseI	GACGC	1 cut(s)	1143
Csp6I	GTAC	4 cut(s)	699, 736, 781, 1339
CviAII	CATG	3 cut(s)	771, 1237, 1429
CviQI	GTAC	4 cut(s)	699, 736, 781, 1339
DdeI	CTNAG	4 cut(s)	240, 258, 359, 754
DpnI	GATC	5 cut(s)	334, 346, 597, 611, 899
DpnII	GATC	5 cut(s)	332, 344, 595, 609, 897
DraI	TTTAAA	1 cut(s)	1204
Eco130I	CCWWGG	1 cut(s)	1037
Eco147I	AGGCCT	1 cut(s)	441
Eco47I	GGWCC	4 cut(s)	149, 185, 320, 1017
Eco57I	CTGAAG	2 cut(s)	420, 840
Eco81I	CCTNAGG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	1041
EcoO109I	RGGNCCY	2 cut(s)	149, 244
EcoRI	GAATTC	2 cut(s)	1047, 1379
EcoRII	CCWGG	1 cut(s)	1183
EcoT14I	CCWWGG	1 cut(s)	1037
ErhI	CCWWGG	1 cut(s)	1037
FaeI	CATG	3 cut(s)	774, 1240, 1432
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	3 cut(s)	770, 1236, 1428
FauNDI	CATATG	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	180, 801, 1421
FokI	GGATG	2 cut(s)	221, 988
Fsp4HI	GCNGC	3 cut(s)	180, 801, 1421
FspBI	CTAG	6 cut(s)	59, 116, 600, 696, 797, 1190
GluI	GCNGC	3 cut(s)	180, 801, 1421
GsaI	CCCAGC	1 cut(s)	879
GsuI	CTGGAG	2 cut(s)	165, 882
HaeIII	GGCC	4 cut(s)	245, 441, 1198, 1265
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	1143
Hin1II	CATG	3 cut(s)	774, 1240, 1432
HinfI	GANTC	5 cut(s)	62, 88, 366, 1246, 1318
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	5 cut(s)	170, 244, 722, 987, 1403
Hpy166II	GTNNAC	3 cut(s)	188, 403, 1394
Hpy188I	TCNGA	1 cut(s)	1053
Hpy188III	TCNNGA	3 cut(s)	144, 670, 1190
Hpy8I	GTNNAC	3 cut(s)	188, 403, 1394
HpyAV	CCTTC	3 cut(s)	283, 334, 452
HpyCH4III	ACNGT	4 cut(s)	546, 1017, 1130, 1391
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 263, 311, 809, 1289
HpyF3I	CTNAG	4 cut(s)	240, 258, 359, 754
Hsp92II	CATG	3 cut(s)	774, 1240, 1432
Kzo9I	GATC	5 cut(s)	332, 344, 595, 609, 897
LmnI	GCTCC	3 cut(s)	5, 32, 231
Lsp1109I	GCAGC	2 cut(s)	191, 787
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	6 cut(s)	59, 116, 600, 696, 797, 1190
MaeIII	GTNAC	3 cut(s)	250, 518, 1011
MalI	GATC	5 cut(s)	334, 346, 597, 611, 899
MboI	GATC	5 cut(s)	332, 344, 595, 609, 897
MboII	GAAGA	7 cut(s)	112, 173, 208, 426, 731, 842, 1101
MflI	RGATCY	2 cut(s)	332, 344
MhlI	GDGCHC	1 cut(s)	307
MlyI	GAGTC	2 cut(s)	375, 1312
MnlI	CCTC	9 cut(s)	19, 81, 140, 221, 235, 368, 456, 801, 1217
MseI	TTAA	3 cut(s)	947, 1169, 1203
MslI	CAYNNNNRTG	1 cut(s)	226
MspA1I	CMGCKG	4 cut(s)	182, 257, 758, 860
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	279, 1185
Mva1269I	GAATGC	2 cut(s)	762, 1143
MvaI	CCWGG	1 cut(s)	1185
MvnI	CGCG	1 cut(s)	1423
MwoI	GCNNNNNNNGC	5 cut(s)	176, 263, 311, 809, 1289
NciI	CCSGG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	5 cut(s)	332, 344, 595, 609, 897
NlaIII	CATG	3 cut(s)	774, 1240, 1432
NlaIV	GGNNCC	3 cut(s)	7, 322, 334
NmuCI	GTSAC	2 cut(s)	250, 1011
NspI	RCATGY	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	441
PciI	ACATGT	1 cut(s)	770
PctI	GAATGC	2 cut(s)	762, 1143
PfeI	GAWTC	3 cut(s)	62, 88, 1246
PflMI	CCANNNNNTGG	1 cut(s)	970
PkrI	GCNGC	3 cut(s)	181, 802, 1422
PleI	GAGTC	2 cut(s)	374, 1312
PpsI	GAGTC	2 cut(s)	374, 1312
PpuMI	RGGWCCY	1 cut(s)	149
PscI	ACATGT	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	1183
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	1 cut(s)	1183
PspN4I	GGNNCC	3 cut(s)	7, 322, 334
PspPI	GGNCC	5 cut(s)	149, 185, 244, 320, 1017
PspPPI	RGGWCCY	1 cut(s)	149
PstI	CTGCAG	2 cut(s)	172, 529
PsuI	RGATCY	2 cut(s)	332, 344
PvuII	CAGCTG	3 cut(s)	182, 758, 860
RsaI	GTAC	4 cut(s)	700, 737, 782, 1340
RsaNI	GTAC	4 cut(s)	699, 736, 781, 1339
RseI	CAYNNNNRTG	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	947, 1169, 1203
SatI	GCNGC	3 cut(s)	180, 801, 1421
Sau3AI	GATC	5 cut(s)	332, 344, 595, 609, 897
Sau96I	GGNCC	5 cut(s)	149, 185, 244, 320, 1017
SchI	GAGTC	2 cut(s)	375, 1312
ScrFI	CCNGG	2 cut(s)	279, 1185
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	3 cut(s)	168, 474, 525
SinI	GGWCC	4 cut(s)	149, 185, 320, 1017
SmiMI	CAYNNNNRTG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	115
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	3 cut(s)	255, 270, 1421
SspMI	CTAG	6 cut(s)	59, 116, 600, 696, 797, 1190
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	277, 1183
StyI	CCWWGG	1 cut(s)	1037
TaaI	ACNGT	4 cut(s)	546, 1017, 1130, 1391
TaqI	TCGA	2 cut(s)	448, 900
TatI	WGTACW	1 cut(s)	698
TauI	GCSGC	1 cut(s)	1423
TfiI	GAWTC	3 cut(s)	62, 88, 1246
Tru1I	TTAA	3 cut(s)	947, 1169, 1203
Tru9I	TTAA	3 cut(s)	947, 1169, 1203
TscAI	CASTG	4 cut(s)	367, 529, 1317, 1418
TseFI	GTSAC	2 cut(s)	250, 1011
TseI	GCWGC	2 cut(s)	179, 800
Tsp45I	GTSAC	2 cut(s)	250, 1011
TspDTI	ATGAA	4 cut(s)	214, 372, 474, 1364
TspGWI	ACGGA	1 cut(s)	1066
TspRI	CASTG	4 cut(s)	367, 529, 1317, 1418
Van91I	CCANNNNNTGG	1 cut(s)	970
VpaK11BI	GGWCC	4 cut(s)	149, 185, 320, 1017
XagI	CCTNNNNNAGG	1 cut(s)	1041
XapI	RAATTY	5 cut(s)	353, 679, 1047, 1148, 1379
XbaI	TCTAGA	1 cut(s)	1189
XceI	RCATGY	1 cut(s)	774
XspI	CTAG	6 cut(s)	59, 116, 600, 696, 797, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.