Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017639

Physical Location & Seq

Genomic Coordinates Reverse (-)

88779352 .. 88780779

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG558200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGGAGACTCAGATTCTTCTACAAGCTCCCAATCCCTAATTGACCATCAACAACTAGAACTAGAATCACAGCCTCAAATCACCACCAAGAATCCCAAAAAACTTGCCCTTATCCCACTAGTTTTCCTTATCTATTTTGAGGTCTCTGGAGGTCCTTATGGTGAAGAACCAGCAGTTGGTGCAGCTGGTCCACTCTTTGCCATTCTTGGCTTCCTCATCTTCCCATTCATTTGGAGCATCCCTGAGGCCCTTGTCACCGCTGAGCTGGCCACCGCCTTCCCCGGAAATGGTGGTTTTGTCATCTGGGCACACCAGGCCTTTGGACCCTTCTGGGGCTCCCTAATGGGATCTTGGAAATTCCTCAGTGGAGTCATCAATTTAGCTTCATATCCTATTCTTTGTGTTGACTATCTCAAGCTGGTAATCCCAATTTTCTCTTCAGGCCTTCCTCGATTTTTCGCAATATTTGTATCAACTGTAGTGCTCTCATGTTTGAATTATTCTGGTTTGAGTATTGTTGGTTACACTGCAGTAGGTTTAGGAATATTGTCACTATGTCCATTTATAGTAATGTCTTTGGTTGCAATTCCCAAGATTGATCCTAGCAGATGGATCAGTTGGGGACAAAAGGGTGTGGAAAAAGATTGGACTTTGTATATAAACACCTTATTCTGGAACTTAAATTTTTGGGACAATGCTAGTACATTAGCTGGAGAAGTTGAACAACCCCAAAAGATGTATCCAAAAGCACTTTTTTCAGCTGGCATTCTCACATGTTTGGGGTACATAGTTCCTCTCCTAGCTGCAACTGGTGCTATTCCACTTGAACAAGAAGATTGGGTTGATGGGTATTTTGCTTCAGCTGGAGAAGTGATTGCTGGGAAGTGGTTGAAATACTGGATCGAAATTGGTGCTGTTTTATCAATCATTGGACTGTTTGAAGCTCAGTTAAGTAGCTGTGCATACCAGCTTTTGGGCATGGCAGACTTGGGGATTTCACCGCTAATTTTTGGGTCACGGTCCAAATGGTTCAACACACCTTGGTTAGGAATTCTCATTTCAACAGTTTTCGCACTATCGGTTTCTTACTTGGATTTCGCAGACATTATATCTTCTGCCAATTTCCTGTACAGTTTGGGAATGCTATTAGAATTTGCATCTTTTCTTTGGTTGAGAGTGAAGTTTCCAGGTCTAGGAAGGCCATTTAAAGTTCCAATGGGCATGAGAGGGTTGATCGTCATGTGCTTGATTCCGTCAGGGTTTTTGGTCTATGTTCTTGCTGTGGCTACCAAAGCTGTTTATTTGGTTAGTGCATTGATGACTCTGTTTGGAATTGTGTGGTACTTTTTTATGAATCTCTGCAAATCAAAGATGTGGTTTGAATTTAACAAGGGTGAACAAAAATTGGAAATACGAGGACATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

475

Amino Acids

52.33

Weight (kDa)

5.41

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	57 - 450	2.4e-33	Amino acid permease
AA_permease	PF00324	58 - 429	4.5e-11	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45281
malus_domestica	MD11G1009900.v1.1
prunus_persica	Prupe.6G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082951
rosa_laevigata	RLG00000037004
rosa_multiflora	Rmu_sc0017035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001470
rosa_rugosa	Rorug05G0481600
rosa_samantha	Rh5BG558200 Rh5CG581100 Rh5DG567000
rosa_wichuraiana	Rw5G049740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	176, 973
AciI	CCGC	3 cut(s)	258, 273, 1001
AclWI	GGATC	4 cut(s)	355, 593, 620, 908
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	5 cut(s)	356, 682, 1050, 1151, 1382
AcuI	CTGAAG	2 cut(s)	423, 843
AfaI	GTAC	4 cut(s)	703, 785, 1130, 1343
AfiI	CCNNNNNNNGG	7 cut(s)	176, 287, 332, 672, 973, 1046, 1193
AflIII	ACRYGT	1 cut(s)	773
AgsI	TTSAA	8 cut(s)	496, 722, 827, 892, 941, 1033, 1062, 1382
AhlI	ACTAGT	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	312, 1186
AjuI	GAANNNNNNNTTGG	4 cut(s)	159, 191, 421, 453
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	4 cut(s)	355, 593, 620, 908
AoxI	GGCC	5 cut(s)	246, 267, 315, 442, 1199
ApeKI	GCWGC	2 cut(s)	182, 803
ApoI	RAATTY	5 cut(s)	356, 682, 1050, 1151, 1382
AspS9I	GGNCC	5 cut(s)	152, 188, 247, 323, 1020
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	5 cut(s)	73, 173, 247, 990, 1406
AvaII	GGWCC	4 cut(s)	152, 188, 323, 1020
AxyI	CCTNAGG	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	194, 790
BccI	CCATC	3 cut(s)	54, 603, 839
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciT130I	CCWGG	2 cut(s)	314, 1188
BciVI	GTATCC	1 cut(s)	750
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	148
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	7 cut(s)	56, 62, 119, 603, 699, 800, 1193
BfmI	CTRYAG	2 cut(s)	477, 528
BfuI	GTATCC	1 cut(s)	750
BisI	GCNGC	2 cut(s)	183, 804
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	2 cut(s)	184, 805
Bme1390I	CCNGG	3 cut(s)	282, 314, 1188
Bme18I	GGWCC	4 cut(s)	152, 188, 323, 1020
BmgT120I	GGNCC	5 cut(s)	152, 188, 247, 323, 1020
BmiI	GGNNCC	2 cut(s)	325, 337
BmrFI	CCNGG	3 cut(s)	282, 314, 1188
BmsI	GCATC	2 cut(s)	246, 1166
BpmI	CTGGAG	3 cut(s)	168, 732, 885
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	280, 1040
Bsc4I	CCNNNNNNNGG	7 cut(s)	176, 287, 332, 672, 973, 1046, 1193
Bse1I	ACTGG	2 cut(s)	814, 902
Bse21I	CCTNAGG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	314, 1188
BseDI	CCNNGG	2 cut(s)	280, 1040
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	7 cut(s)	176, 287, 332, 672, 973, 1046, 1193
BseMII	CTCAG	5 cut(s)	24, 234, 252, 376, 959
BseNI	ACTGG	2 cut(s)	814, 902
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	194, 790
BseYI	CCCAGC	1 cut(s)	878
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	5 cut(s)	248, 269, 317, 444, 1201
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	636, 704
BslI	CCNNNNNNNGG	7 cut(s)	176, 287, 332, 672, 973, 1046, 1193
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	636, 704
BsmI	GAATGC	2 cut(s)	765, 1146
BsnI	GGCC	5 cut(s)	248, 269, 317, 444, 1201
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	3 cut(s)	310, 338, 486
Bsp1407I	TGTACA	1 cut(s)	1128
Bsp143I	GATC	5 cut(s)	347, 598, 612, 900, 1233
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	3 cut(s)	258, 273, 1001
BspANI	GGCC	5 cut(s)	248, 269, 317, 444, 1201
BspCNI	CTCAG	5 cut(s)	23, 235, 253, 375, 958
BspLI	GGNNCC	2 cut(s)	325, 337
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	4 cut(s)	355, 593, 620, 908
BspTNI	GGTCTC	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	1128
BsrI	ACTGG	2 cut(s)	814, 902
BssECI	CCNNGG	2 cut(s)	280, 1040
BssMI	GATC	5 cut(s)	347, 598, 612, 900, 1233
BssT1I	CCWWGG	1 cut(s)	1040
Bst2UI	CCWGG	2 cut(s)	314, 1188
Bst4CI	ACNGT	5 cut(s)	478, 936, 1020, 1066, 1133
Bst6I	CTCTTC	1 cut(s)	442
BstAPI	GCANNNNNTGC	2 cut(s)	179, 812
BstAUI	TGTACA	1 cut(s)	1128
BstC8I	GCNNGC	2 cut(s)	267, 763
BstDEI	CTNAG	5 cut(s)	10, 243, 261, 362, 945
BstENI	CCTNNNNNAGG	1 cut(s)	1044
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	5 cut(s)	350, 601, 615, 903, 1236
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	5 cut(s)	347, 598, 612, 900, 1233
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 266, 314, 812, 1292
BstNI	CCWGG	2 cut(s)	314, 1188
BstNSI	RCATGY	1 cut(s)	777
BstSCI	CCNGG	3 cut(s)	280, 312, 1186
BstSFI	CTRYAG	2 cut(s)	477, 528
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	194, 790
BstX2I	RGATCY	1 cut(s)	347
BstXI	CCANNNNNNTGG	2 cut(s)	231, 320
BstYI	RGATCY	1 cut(s)	347
Bsu36I	CCTNAGG	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	750
BsuRI	GGCC	5 cut(s)	248, 269, 317, 444, 1201
BtsCI	GGATG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	2 cut(s)	370, 525
Cac8I	GCNNGC	2 cut(s)	267, 763
Cfr13I	GGNCC	5 cut(s)	152, 188, 247, 323, 1020
Csp6I	GTAC	4 cut(s)	702, 784, 1129, 1342
CviAII	CATG	6 cut(s)	489, 774, 979, 1222, 1240, 1421
CviQI	GTAC	4 cut(s)	702, 784, 1129, 1342
DdeI	CTNAG	5 cut(s)	10, 243, 261, 362, 945
DpnI	GATC	5 cut(s)	349, 600, 614, 902, 1235
DpnII	GATC	5 cut(s)	347, 598, 612, 900, 1233
DraI	TTTAAA	1 cut(s)	1207
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	1040
Eco147I	AGGCCT	2 cut(s)	317, 444
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	4 cut(s)	152, 188, 323, 1020
Eco57I	CTGAAG	2 cut(s)	423, 843
Eco81I	CCTNAGG	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	1044
EcoO109I	RGGNCCY	2 cut(s)	152, 247
EcoRI	GAATTC	1 cut(s)	1050
EcoRII	CCWGG	2 cut(s)	312, 1186
EcoT14I	CCWWGG	1 cut(s)	1040
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	1040
FaeI	CATG	6 cut(s)	492, 777, 982, 1225, 1243, 1424
FaqI	GGGAC	2 cut(s)	636, 704
FatI	CATG	6 cut(s)	488, 773, 978, 1221, 1239, 1420
Fnu4HI	GCNGC	2 cut(s)	183, 804
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	183, 804
FspBI	CTAG	7 cut(s)	56, 62, 119, 603, 699, 800, 1193
GluI	GCNGC	2 cut(s)	183, 804
GsaI	CCCAGC	1 cut(s)	882
GsuI	CTGGAG	3 cut(s)	168, 732, 885
HaeIII	GGCC	5 cut(s)	248, 269, 317, 444, 1201
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	6 cut(s)	492, 777, 982, 1225, 1243, 1424
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	8 cut(s)	8, 14, 65, 91, 369, 1249, 1321, 1354
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	5 cut(s)	73, 173, 247, 990, 1406
Hpy166II	GTNNAC	3 cut(s)	191, 406, 1397
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	147, 673
Hpy8I	GTNNAC	3 cut(s)	191, 406, 1397
HpyAV	CCTTC	4 cut(s)	286, 337, 455, 1191
HpyCH4III	ACNGT	5 cut(s)	478, 936, 1020, 1066, 1133
HpyCH4V	TGCA	8 cut(s)	182, 530, 584, 806, 962, 1157, 1313, 1362
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 266, 314, 812, 1292
HpyF3I	CTNAG	5 cut(s)	10, 243, 261, 362, 945
Hsp92II	CATG	6 cut(s)	492, 777, 982, 1225, 1243, 1424
Kzo9I	GATC	5 cut(s)	347, 598, 612, 900, 1233
LmnI	GCTCC	3 cut(s)	32, 234, 341
Lsp1109I	GCAGC	2 cut(s)	194, 790
LweI	GCATC	2 cut(s)	246, 1166
MaeI	CTAG	7 cut(s)	56, 62, 119, 603, 699, 800, 1193
MaeIII	GTNAC	4 cut(s)	253, 521, 549, 1014
MalI	GATC	5 cut(s)	349, 600, 614, 902, 1235
MboI	GATC	5 cut(s)	347, 598, 612, 900, 1233
MboII	GAAGA	6 cut(s)	9, 176, 211, 429, 845, 1104
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	3 cut(s)	310, 338, 486
MlsI	TGGCCA	1 cut(s)	269
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	3 cut(s)	2, 378, 1315
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	4 cut(s)	680, 950, 1206, 1386
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	4 cut(s)	185, 260, 761, 863
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	3 cut(s)	282, 314, 1188
Mva1269I	GAATGC	2 cut(s)	765, 1146
MvaI	CCWGG	2 cut(s)	314, 1188
MwoI	GCNNNNNNNGC	5 cut(s)	179, 266, 314, 812, 1292
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	5 cut(s)	347, 598, 612, 900, 1233
NlaIII	CATG	6 cut(s)	492, 777, 982, 1225, 1243, 1424
NlaIV	GGNNCC	2 cut(s)	325, 337
NmuCI	GTSAC	3 cut(s)	253, 549, 1014
NspI	RCATGY	1 cut(s)	777
PceI	AGGCCT	2 cut(s)	317, 444
PciI	ACATGT	1 cut(s)	773
PctI	GAATGC	2 cut(s)	765, 1146
PfeI	GAWTC	5 cut(s)	14, 65, 91, 1249, 1354
PflMI	CCANNNNNTGG	2 cut(s)	176, 973
PkrI	GCNGC	2 cut(s)	184, 805
PleI	GAGTC	3 cut(s)	2, 377, 1315
PpsI	GAGTC	3 cut(s)	2, 377, 1315
PpuMI	RGGWCCY	1 cut(s)	152
PscI	ACATGT	1 cut(s)	773
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	312, 1186
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	2 cut(s)	312, 1186
PspN4I	GGNNCC	2 cut(s)	325, 337
PspPI	GGNCC	5 cut(s)	152, 188, 247, 323, 1020
PspPPI	RGGWCCY	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	3 cut(s)	185, 761, 863
RsaI	GTAC	4 cut(s)	703, 785, 1130, 1343
RsaNI	GTAC	4 cut(s)	702, 784, 1129, 1342
SaqAI	TTAA	4 cut(s)	680, 950, 1206, 1386
SatI	GCNGC	2 cut(s)	183, 804
Sau3AI	GATC	5 cut(s)	347, 598, 612, 900, 1233
Sau96I	GGNCC	5 cut(s)	152, 188, 247, 323, 1020
SchI	GAGTC	3 cut(s)	2, 378, 1315
ScrFI	CCNGG	3 cut(s)	282, 314, 1188
SduI	GDGCHC	3 cut(s)	310, 338, 486
SfaNI	GCATC	2 cut(s)	246, 1166
SfcI	CTRYAG	2 cut(s)	477, 528
SinI	GGWCC	4 cut(s)	152, 188, 323, 1020
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SpeI	ACTAGT	1 cut(s)	118
SseBI	AGGCCT	2 cut(s)	317, 444
SsiI	CCGC	3 cut(s)	258, 273, 1001
SspI	AATATT	2 cut(s)	465, 546
SspMI	CTAG	7 cut(s)	56, 62, 119, 603, 699, 800, 1193
StuI	AGGCCT	2 cut(s)	317, 444
StyD4I	CCNGG	3 cut(s)	280, 312, 1186
StyI	CCWWGG	1 cut(s)	1040
TaaI	ACNGT	5 cut(s)	478, 936, 1020, 1066, 1133
TaqI	TCGA	2 cut(s)	451, 903
TatI	WGTACW	2 cut(s)	701, 1128
TfiI	GAWTC	5 cut(s)	14, 65, 91, 1249, 1354
Tru1I	TTAA	4 cut(s)	680, 950, 1206, 1386
Tru9I	TTAA	4 cut(s)	680, 950, 1206, 1386
TscAI	CASTG	2 cut(s)	370, 532
TseFI	GTSAC	3 cut(s)	253, 549, 1014
TseI	GCWGC	2 cut(s)	182, 803
Tsp45I	GTSAC	3 cut(s)	253, 549, 1014
TspDTI	ATGAA	3 cut(s)	217, 375, 1367
TspGWI	ACGGA	1 cut(s)	1242
TspRI	CASTG	2 cut(s)	370, 532
Van91I	CCANNNNNTGG	2 cut(s)	176, 973
VpaK11BI	GGWCC	4 cut(s)	152, 188, 323, 1020
XagI	CCTNNNNNAGG	1 cut(s)	1044
XapI	RAATTY	5 cut(s)	356, 682, 1050, 1151, 1382
XceI	RCATGY	1 cut(s)	777
XspI	CTAG	7 cut(s)	56, 62, 119, 603, 699, 800, 1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.