Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0017639

Physical Location & Seq

Genomic Coordinates Forward (+)

775342 .. 776766

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1009900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGAGAGCCTCAGAATCTTCTCCAAGCTCCCAAATTTCCCAATCCCTTCTTGAACAACAAGAAGCCGAATCACAACCCCAAATCAGCCCCCAAAACCCCAAGAAACTAGCCCTTCTCCCACTAGTCTTCCTCATCTACTTTGAAGTCTCTGGAGGTCCCTATGGTGAAGAATCAGCTGTGGGGGCAGCTGGCCCTCTCTTTGCCATCCTTGGCTTCCTCATCTTCCCCTTCATTTGGAGCATCCCTGAGGCCCTTGTCACCGCCGAGCTCTCCACCACCTTCCCCGGAAATGGCGGTTTCGTCATCTGGGCACACCAGGCATTTGGCCCCTTCTGGGGATCCCTCATGGGATCTTGGAAATTCCTCAGTGGTGTCATCAACTTAGCTTCATACCCAATTCTTTGTGTGGACTATCTCAAGCTGGTAATCCCCATTTTTGCTTCCGGCTTACCGCGATTTTTCGCCATATTTATCTCTACTTTAGTTCTATCTTTTCTCAACTACTCTGGTTTGAGCATTGTTGGATACACTGCAGTAGGTTTAGGAATTGTTTCACTTTGCCCCTTTATCTTGATGTCTTTGATTGCAATTCCAAAAATTCATCCGAGCAGATGGATCAGTTTGGGTGAAAAGGGTGTGAAAAAAGATTGGACTTTATTTATCAACACCCTATTTTGGAACTTGAATTTTTGGGACAATGCTAGTACTCTAGCTGGAGAAGTAGAGCAACCCCAAAAGCTTTTCCCAAAAGCACTTTTCTCAGCTGGGATTCTCACATGTTTGGGCTACATAATCCCTCTCCTGGCTGCAACTGGGGCTATTCCACTTGACCAAGAAAGTTGGGTTGATGGGTATTTAGCTTCTGCTGGAGAAATGATTGCTGGGAAATGGTTGAAATTCTGGATTGAAATTGGTGCGGTTTTATCTATTATTGGACTTTTTGAGGCACAATTGAGCAGCTGTGCATACCAGCTTTTGGGTATGGCAAACTTGGGGTTCTTACCGAAGATTTTCGGGGCACGGTCCAAATGGTTCAACACCCCTTGGCTAGGGATTCTGATTTCAACTGTGATTGCGCTTGCTGTTTCTTACTTGGATTTCACAGACATCATATCTTCTGCAAATTTCTTGTACAGTTTGGGAATGCTGTTGGAATTTGCTTCTTTTATCTGGTTGAGAGTGAAATTTCCAGCTCTGAAGAGGCCATTCAAAGTTCCAATGGGATTGCTAGGGTTGGTGGTTATGTGCTTCATTCCATCTGTGTTTTTGGTGTATGTTTTGGCTGTCGGCACCAAAGCTGTTTATTTGGTTAGTGCATTGATGACTCTTTTTGGTGTTGGCTGGTACTTTTTGATGAATCTCAGCAAATCAAAGATGTGGTTTGAGTTCAATTTGGGTGAAAAAAAATTGGACTACGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

475

Amino Acids

52.19

Weight (kDa)

6.22

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	58 - 436	5.4e-36	Amino acid permease
AA_permease	PF00324	58 - 430	1.5e-13	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45281
malus_domestica	MD11G1009900.v1.1
prunus_persica	Prupe.6G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082951
rosa_laevigata	RLG00000037004
rosa_multiflora	Rmu_sc0017035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001470
rosa_rugosa	Rorug05G0481600
rosa_samantha	Rh5BG558200 Rh5CG581100 Rh5DG567000
rosa_wichuraiana	Rw5G049740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1289
AccB7I	CCANNNNNTGG	1 cut(s)	976
AccII	CGCG	1 cut(s)	454
AciI	CCGC	4 cut(s)	261, 294, 452, 917
AclWI	GGATC	4 cut(s)	333, 346, 358, 623
AcsI	RAATTY	8 cut(s)	33, 359, 597, 685, 896, 1123, 1154, 1184
AcuI	CTGAAG	1 cut(s)	1217
AfaI	GTAC	3 cut(s)	706, 1133, 1346
AfiI	CCNNNNNNNGG	8 cut(s)	234, 290, 334, 335, 675, 802, 976, 1049
AflIII	ACRYGT	1 cut(s)	776
AgsI	TTSAA	9 cut(s)	53, 143, 685, 895, 908, 1036, 1065, 1210, 1390
AhlI	ACTAGT	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	315, 801
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	4 cut(s)	333, 346, 358, 623
AoxI	GGCC	4 cut(s)	190, 249, 325, 1202
ApeKI	GCWGC	3 cut(s)	185, 806, 957
ApoI	RAATTY	8 cut(s)	33, 359, 597, 685, 896, 1123, 1154, 1184
Asp700I	GAANNNNTTC	2 cut(s)	550, 1010
AspLEI	GCGC	1 cut(s)	1078
AspS9I	GGNCC	5 cut(s)	155, 191, 250, 326, 1023
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	4 cut(s)	176, 250, 638, 1409
AvaII	GGWCC	2 cut(s)	155, 1023
AxyI	CCTNAGG	1 cut(s)	246
BaeGI	GKGCMC	2 cut(s)	313, 1021
BamHI	GGATCC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	1289
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	197, 793, 969
BccI	CCATC	4 cut(s)	212, 606, 842, 1264
BciT130I	CCWGG	2 cut(s)	317, 803
BciVI	GTATCC	1 cut(s)	518
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	151
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	6 cut(s)	107, 122, 702, 710, 1049, 1229
BfmI	CTRYAG	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	518
BisI	GCNGC	3 cut(s)	186, 807, 958
BlsI	GCNGC	3 cut(s)	187, 808, 959
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	3 cut(s)	285, 317, 803
Bme18I	GGWCC	2 cut(s)	155, 1023
BmgT120I	GGNCC	5 cut(s)	155, 191, 250, 326, 1023
BmiI	GGNNCC	4 cut(s)	157, 328, 340, 1291
BmrFI	CCNGG	3 cut(s)	285, 317, 803
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	3 cut(s)	171, 735, 888
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	208, 283, 1043
Bsc4I	CCNNNNNNNGG	8 cut(s)	234, 290, 334, 335, 675, 802, 976, 1049
Bse1I	ACTGG	1 cut(s)	817
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	317, 803
BseDI	CCNNGG	3 cut(s)	208, 283, 1043
BseGI	GGATG	3 cut(s)	204, 240, 601
BseLI	CCNNNNNNNGG	8 cut(s)	234, 290, 334, 335, 675, 802, 976, 1049
BseMII	CTCAG	5 cut(s)	24, 237, 379, 774, 1375
BseNI	ACTGG	1 cut(s)	817
BseSI	GKGCMC	2 cut(s)	313, 1021
BseXI	GCAGC	3 cut(s)	197, 793, 969
BseYI	CCCAGC	2 cut(s)	764, 881
Bsh1236I	CGCG	1 cut(s)	454
BshFI	GGCC	4 cut(s)	192, 251, 327, 1204
BshNI	GGYRCC	1 cut(s)	1289
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	285, 444
BslFI	GGGAC	2 cut(s)	141, 707
BslI	CCNNNNNNNGG	8 cut(s)	234, 290, 334, 335, 675, 802, 976, 1049
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	2 cut(s)	141, 707
BsmI	GAATGC	1 cut(s)	1149
BsnI	GGCC	4 cut(s)	192, 251, 327, 1204
Bsp1286I	GDGCHC	3 cut(s)	270, 313, 1021
Bsp1407I	TGTACA	1 cut(s)	1131
Bsp143I	GATC	3 cut(s)	338, 350, 615
BspACI	CCGC	4 cut(s)	261, 294, 452, 917
BspANI	GGCC	4 cut(s)	192, 251, 327, 1204
BspCNI	CTCAG	5 cut(s)	23, 238, 378, 773, 1374
BspFNI	CGCG	1 cut(s)	454
BspLI	GGNNCC	4 cut(s)	157, 328, 340, 1291
BspMAI	CTGCAG	1 cut(s)	535
BspPI	GGATC	4 cut(s)	333, 346, 358, 623
BspT107I	GGYRCC	1 cut(s)	1289
BsrGI	TGTACA	1 cut(s)	1131
BsrI	ACTGG	1 cut(s)	817
BssECI	CCNNGG	3 cut(s)	208, 283, 1043
BssMI	GATC	3 cut(s)	338, 350, 615
BssT1I	CCWWGG	2 cut(s)	208, 1043
Bst2UI	CCWGG	2 cut(s)	317, 803
Bst4CI	ACNGT	3 cut(s)	1023, 1069, 1136
Bst6I	CTCTTC	1 cut(s)	1193
BstAUI	TGTACA	1 cut(s)	1131
BstC8I	GCNNGC	2 cut(s)	190, 1080
BstDEI	CTNAG	6 cut(s)	10, 246, 365, 382, 760, 1361
BstENI	CCTNNNNNAGG	1 cut(s)	1047
BstF5I	GGATG	3 cut(s)	204, 240, 601
BstFNI	CGCG	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	1078
BstKTI	GATC	3 cut(s)	341, 353, 618
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	3 cut(s)	338, 350, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 317, 815
BstNI	CCWGG	2 cut(s)	317, 803
BstNSI	RCATGY	1 cut(s)	780
BstSCI	CCNGG	3 cut(s)	283, 315, 801
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	2 cut(s)	313, 1021
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	3 cut(s)	197, 793, 969
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	338, 350
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	2 cut(s)	338, 350
Bsu36I	CCTNAGG	1 cut(s)	246
BsuI	GTATCC	1 cut(s)	518
BsuRI	GGCC	4 cut(s)	192, 251, 327, 1204
BtsCI	GGATG	3 cut(s)	204, 240, 601
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	373, 528
Cac8I	GCNNGC	2 cut(s)	190, 1080
CfoI	GCGC	1 cut(s)	1078
Cfr13I	GGNCC	5 cut(s)	155, 191, 250, 326, 1023
Csp6I	GTAC	3 cut(s)	705, 1132, 1345
CviAII	CATG	2 cut(s)	346, 777
CviQI	GTAC	3 cut(s)	705, 1132, 1345
DdeI	CTNAG	6 cut(s)	10, 246, 365, 382, 760, 1361
DpnI	GATC	3 cut(s)	340, 352, 617
DpnII	GATC	3 cut(s)	338, 350, 615
Eam1104I	CTCTTC	1 cut(s)	1193
EarI	CTCTTC	1 cut(s)	1193
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	2 cut(s)	208, 1043
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	155, 1023
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	1217
Eco81I	CCTNAGG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	1047
EcoO109I	RGGNCCY	2 cut(s)	155, 250
EcoRII	CCWGG	2 cut(s)	315, 801
EcoT14I	CCWWGG	2 cut(s)	208, 1043
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	208, 1043
FaeI	CATG	2 cut(s)	349, 780
FaqI	GGGAC	2 cut(s)	141, 707
FatI	CATG	2 cut(s)	345, 776
Fnu4HI	GCNGC	3 cut(s)	186, 807, 958
FokI	GGATG	3 cut(s)	191, 227, 588
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	3 cut(s)	186, 807, 958
FspBI	CTAG	6 cut(s)	107, 122, 702, 710, 1049, 1229
GlaI	GCGC	1 cut(s)	1077
GluI	GCNGC	3 cut(s)	186, 807, 958
GsaI	CCCAGC	2 cut(s)	768, 885
GsuI	CTGGAG	3 cut(s)	171, 735, 888
HaeIII	GGCC	4 cut(s)	192, 251, 327, 1204
HapII	CCGG	2 cut(s)	285, 444
HhaI	GCGC	1 cut(s)	1078
Hin1II	CATG	2 cut(s)	349, 780
Hin6I	GCGC	1 cut(s)	1076
HinP1I	GCGC	1 cut(s)	1076
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	7 cut(s)	14, 68, 170, 769, 1054, 1324, 1357
HpaII	CCGG	2 cut(s)	285, 444
HphI	GGTGA	4 cut(s)	176, 250, 638, 1409
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	4 cut(s)	13, 606, 1059, 1197
Hpy188III	TCNNGA	4 cut(s)	50, 150, 571, 901
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	5 cut(s)	56, 122, 238, 289, 340
HpyCH4III	ACNGT	3 cut(s)	1023, 1069, 1136
HpyCH4V	TGCA	6 cut(s)	533, 587, 809, 965, 1121, 1316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 317, 815
HpyF3I	CTNAG	6 cut(s)	10, 246, 365, 382, 760, 1361
Hsp92II	CATG	2 cut(s)	349, 780
HspAI	GCGC	1 cut(s)	1076
Kzo9I	GATC	3 cut(s)	338, 350, 615
LmnI	GCTCC	2 cut(s)	32, 237
Lsp1109I	GCAGC	3 cut(s)	197, 793, 969
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	6 cut(s)	107, 122, 702, 710, 1049, 1229
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	340, 352, 617
MboI	GATC	3 cut(s)	338, 350, 615
MboII	GAAGA	7 cut(s)	9, 118, 179, 214, 1018, 1107, 1210
MfeI	CAATTG	1 cut(s)	950
MflI	RGATCY	2 cut(s)	338, 350
MhlI	GDGCHC	3 cut(s)	270, 313, 1021
MlyI	GAGTC	1 cut(s)	1318
MmeI	TCCRAC	2 cut(s)	502, 1131
MroXI	GAANNNNTTC	2 cut(s)	550, 1010
MspA1I	CMGCKG	4 cut(s)	176, 188, 764, 960
MspI	CCGG	2 cut(s)	285, 444
MspR9I	CCNGG	3 cut(s)	285, 317, 803
MunI	CAATTG	1 cut(s)	950
Mva1269I	GAATGC	1 cut(s)	1149
MvaI	CCWGG	2 cut(s)	317, 803
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	182, 317, 815
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	3 cut(s)	338, 350, 615
NlaIII	CATG	2 cut(s)	349, 780
NlaIV	GGNNCC	4 cut(s)	157, 328, 340, 1291
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	780
PciI	ACATGT	1 cut(s)	776
PctI	GAATGC	1 cut(s)	1149
PdmI	GAANNNNTTC	2 cut(s)	550, 1010
PfeI	GAWTC	6 cut(s)	14, 68, 170, 769, 1054, 1357
PflMI	CCANNNNNTGG	1 cut(s)	976
PkrI	GCNGC	3 cut(s)	187, 808, 959
PleI	GAGTC	1 cut(s)	1318
PpsI	GAGTC	1 cut(s)	1318
PpuMI	RGGWCCY	1 cut(s)	155
PscI	ACATGT	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	315, 801
PspFI	CCCAGC	2 cut(s)	764, 881
PspGI	CCWGG	2 cut(s)	315, 801
PspN4I	GGNNCC	4 cut(s)	157, 328, 340, 1291
PspPI	GGNCC	5 cut(s)	155, 191, 250, 326, 1023
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	2 cut(s)	338, 350
PvuII	CAGCTG	4 cut(s)	176, 188, 764, 960
RsaI	GTAC	3 cut(s)	706, 1133, 1346
RsaNI	GTAC	3 cut(s)	705, 1132, 1345
SacI	GAGCTC	1 cut(s)	270
SatI	GCNGC	3 cut(s)	186, 807, 958
Sau3AI	GATC	3 cut(s)	338, 350, 615
Sau96I	GGNCC	5 cut(s)	155, 191, 250, 326, 1023
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	1 cut(s)	1318
ScrFI	CCNGG	3 cut(s)	285, 317, 803
SduI	GDGCHC	3 cut(s)	270, 313, 1021
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	155, 1023
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SpeI	ACTAGT	1 cut(s)	121
SsiI	CCGC	4 cut(s)	261, 294, 452, 917
SspMI	CTAG	6 cut(s)	107, 122, 702, 710, 1049, 1229
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	3 cut(s)	283, 315, 801
StyI	CCWWGG	2 cut(s)	208, 1043
TaaI	ACNGT	3 cut(s)	1023, 1069, 1136
TatI	WGTACW	2 cut(s)	704, 1131
TfiI	GAWTC	6 cut(s)	14, 68, 170, 769, 1054, 1357
TscAI	CASTG	2 cut(s)	373, 535
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	185, 806, 957
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	5 cut(s)	220, 378, 590, 1240, 1370
TspRI	CASTG	2 cut(s)	373, 535
Van91I	CCANNNNNTGG	1 cut(s)	976
VpaK11BI	GGWCC	2 cut(s)	155, 1023
XagI	CCTNNNNNAGG	1 cut(s)	1047
XapI	RAATTY	8 cut(s)	33, 359, 597, 685, 896, 1123, 1154, 1184
XceI	RCATGY	1 cut(s)	780
XmnI	GAANNNNTTC	2 cut(s)	550, 1010
XspI	CTAG	6 cut(s)	107, 122, 702, 710, 1049, 1229
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.