Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017639

Physical Location & Seq

Genomic Coordinates Forward (+)

1797616 .. 1799238

Gene Structure 1623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGAGCATGGGAGCCTCAGATTCTTCTACAAGCTCCCAATCCCTAATTGAACGTCAACAACAAGAACTAGAATCACAGCCTCAAATTACCACCAAGAATCCCAAAAAACTTGCCCTTATCCCACTAGTTTTCCTCATCTATTTTGAGGTCTCTGGAGGTCCTTATGGTGAAGAACCAGCAGTTGGTGCAGCTGGTCCACTCTTTGCCATTCTTGGCTTCCTCATCTTCCCATTCATTTGGAGCATCCCAGAGGCCCTTGTCACTGCTGAGCTGGCCACCGCCTTCCCCGGAAATGGTGGTTTTGTCATCTGGGCACACCAGGCCTTTGGACCCTTCTGGGGCTCCCTAATGGGATCTTGGAAATTCCTCAGTGGAGTCATCAATTTAGCTTCATATCCTATTCTTTGTGTTGACTATCTCAAGCTGGTAATCCCAATTTTCTCTTCAGGCCTTCCTCGATTTTTCGCAATATTTGTATCAACTGTAGTGCTCTCATGTTTGAATTATTCTGGTTTGAGTATTGTTGGTTACACTGCAGTAGGTTTAGGAATAGTGTCACTATGTCCATTTATAGTAATGTCTTTGGTTGCAATTCCCAAGATTGATCCTAGCAGATGGATCAGTTTGGGACAAAAGGGTGTGGAAAAAGATTGGACTTTGTATATAAACACCTTATTCTGGAACTTAAATTTTTGGGACAATGCTAGTACATTAGCTGGTGAAGTTGAACAACCCCAAAAGATGTATCCAAAAGCACTTTTTTCAGCTGGCATTCTCACATGTTTGGGGTACATAGTTCCTCTCCTAGCTGCAACTGGTGCTATTCCACTTGAACAAGAAGATTGGGTTGATGGGTATTTAGCTTCAGCTGGAGAAGTGATTGCTGGGAAGTGGTTGAAATACTGGATCGAAATTGGTGCTGTTTTATCAATCATTGGACTGTTTGAAGCTCAGTTAAGTAGCTGTGCATACCAGCTTTTGGGCATGGCAGACTTGGGGATTTCACCGCTAATTTTTGGGTCACGGTCCAAATGGTTCAACACACCTTGGTTAGGAATTCTCATTTCAACAGTTTTCGCACTATCGGTTTCTTACCTGGATTTCGCAGACATTATATCTTCTGCCAATTTCCTGTACAGTTTGGGAATGCTATTAGAATTTGCATCTTTTCTATGGTTGAGAGTGAAGTTTCCAGGTCTAGGAAGGCCATTTAAAGTTCCAATGGGCATGAGAGGGTTGATCGTCATGTGCTTGATTCCTTCAGGGTTTTTGGTCTATGTTCTGGCTGTGGCTACCAAAGCTGTTTATTTGGTTAGTGCATTGATGACTCTGTTTGGAATTGTGTGCTACTTGACGGCTCCTCAATCACTCTGCTCTACTAAAAAGCTTCGTATTGAAGAGAAACCAGATGAGCTTGTAGTTGAAAATCCCTCAGCAACAGTAACTACTACCACTACTTCCCACCGTTCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

491

Amino Acids

53.47

Weight (kDa)

5.43

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	59 - 432	1.1e-33	Amino acid permease
AA_permease	PF00324	60 - 434	3.4e-10	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45281
malus_domestica	MD11G1009900.v1.1
prunus_persica	Prupe.6G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082951
rosa_laevigata	RLG00000037004
rosa_multiflora	Rmu_sc0017035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001470
rosa_rugosa	Rorug05G0481600
rosa_samantha	Rh5BG558200 Rh5CG581100 Rh5DG567000
rosa_wichuraiana	Rw5G049740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	182, 979
AciI	CCGC	2 cut(s)	279, 1007
AclWI	GGATC	4 cut(s)	361, 599, 626, 914
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	4 cut(s)	362, 688, 1056, 1157
AcuI	CTGAAG	3 cut(s)	429, 849, 1245
AfaI	GTAC	3 cut(s)	709, 791, 1136
AfiI	CCNNNNNNNGG	7 cut(s)	182, 293, 338, 678, 979, 1052, 1199
AflIII	ACRYGT	1 cut(s)	779
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	3 cut(s)	318, 1095, 1192
AjuI	GAANNNNNNNTTGG	4 cut(s)	165, 197, 427, 459
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	4 cut(s)	361, 599, 626, 914
AoxI	GGCC	5 cut(s)	252, 273, 321, 448, 1205
ApeKI	GCWGC	2 cut(s)	188, 809
ApoI	RAATTY	4 cut(s)	362, 688, 1056, 1157
AspS9I	GGNCC	5 cut(s)	158, 194, 253, 329, 1026
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	3 cut(s)	179, 731, 996
AvaII	GGWCC	4 cut(s)	158, 194, 329, 1026
BaeGI	GKGCMC	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	492
BbvCI	CCTCAGC	1 cut(s)	1432
BbvI	GCAGC	2 cut(s)	200, 796
BccI	CCATC	2 cut(s)	609, 845
BceAI	ACGGC	1 cut(s)	1371
BcgI	CGANNNNNNTGC	2 cut(s)	899, 933
BciT130I	CCWGG	3 cut(s)	320, 1097, 1194
BciVI	GTATCC	1 cut(s)	756
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	154
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	6 cut(s)	68, 125, 609, 705, 806, 1199
BfmI	CTRYAG	2 cut(s)	483, 534
BfuI	GTATCC	1 cut(s)	756
BisI	GCNGC	2 cut(s)	189, 810
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	2 cut(s)	190, 811
Bme1390I	CCNGG	4 cut(s)	288, 320, 1097, 1194
Bme18I	GGWCC	4 cut(s)	158, 194, 329, 1026
BmgT120I	GGNCC	5 cut(s)	158, 194, 253, 329, 1026
BmiI	GGNNCC	4 cut(s)	13, 331, 343, 1359
BmrFI	CCNGG	4 cut(s)	288, 320, 1097, 1194
BmrI	ACTGGG	1 cut(s)	1465
BmsI	GCATC	2 cut(s)	252, 1172
BmuI	ACTGGG	1 cut(s)	1465
BpmI	CTGGAG	2 cut(s)	174, 891
Bpu10I	CCTNAGC	1 cut(s)	1432
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	286, 1046
Bsc4I	CCNNNNNNNGG	7 cut(s)	182, 293, 338, 678, 979, 1052, 1199
Bse1I	ACTGG	3 cut(s)	820, 908, 1471
BseBI	CCWGG	3 cut(s)	320, 1097, 1194
BseDI	CCNNGG	2 cut(s)	286, 1046
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	7 cut(s)	182, 293, 338, 678, 979, 1052, 1199
BseMII	CTCAG	5 cut(s)	30, 258, 382, 965, 1446
BseNI	ACTGG	3 cut(s)	820, 908, 1471
BseRI	GAGGAG	1 cut(s)	1350
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	200, 796
BseYI	CCCAGC	1 cut(s)	884
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	5 cut(s)	254, 275, 323, 450, 1207
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	642, 710
BslI	CCNNNNNNNGG	7 cut(s)	182, 293, 338, 678, 979, 1052, 1199
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	2 cut(s)	642, 710
BsmI	GAATGC	2 cut(s)	771, 1152
BsnI	GGCC	5 cut(s)	254, 275, 323, 450, 1207
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	3 cut(s)	316, 344, 492
Bsp1407I	TGTACA	1 cut(s)	1134
Bsp143I	GATC	5 cut(s)	353, 604, 618, 906, 1239
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	279, 1007
BspANI	GGCC	5 cut(s)	254, 275, 323, 450, 1207
BspCNI	CTCAG	5 cut(s)	29, 259, 381, 964, 1445
BspLI	GGNNCC	4 cut(s)	13, 331, 343, 1359
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	4 cut(s)	361, 599, 626, 914
BspTNI	GGTCTC	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	1134
BsrI	ACTGG	3 cut(s)	820, 908, 1471
BssECI	CCNNGG	2 cut(s)	286, 1046
BssMI	GATC	5 cut(s)	353, 604, 618, 906, 1239
BssT1I	CCWWGG	1 cut(s)	1046
Bst2UI	CCWGG	3 cut(s)	320, 1097, 1194
Bst4CI	ACNGT	7 cut(s)	484, 942, 1026, 1072, 1139, 1441, 1466
Bst6I	CTCTTC	2 cut(s)	448, 1392
BstAPI	GCANNNNNTGC	2 cut(s)	185, 818
BstAUI	TGTACA	1 cut(s)	1134
BstC8I	GCNNGC	2 cut(s)	273, 769
BstDEI	CTNAG	5 cut(s)	16, 267, 368, 951, 1432
BstENI	CCTNNNNNAGG	1 cut(s)	1050
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	5 cut(s)	356, 607, 621, 909, 1242
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	5 cut(s)	353, 604, 618, 906, 1239
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 272, 320, 818, 1298
BstNI	CCWGG	3 cut(s)	320, 1097, 1194
BstNSI	RCATGY	1 cut(s)	783
BstSCI	CCNGG	4 cut(s)	286, 318, 1095, 1192
BstSFI	CTRYAG	2 cut(s)	483, 534
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	200, 796
BstX2I	RGATCY	1 cut(s)	353
BstXI	CCANNNNNNTGG	2 cut(s)	237, 326
BstYI	RGATCY	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	756
BsuRI	GGCC	5 cut(s)	254, 275, 323, 450, 1207
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	2 cut(s)	261, 531
BtsIMutI	CAGTG	3 cut(s)	261, 376, 531
Cac8I	GCNNGC	2 cut(s)	273, 769
Cfr13I	GGNCC	5 cut(s)	158, 194, 253, 329, 1026
Csp6I	GTAC	3 cut(s)	708, 790, 1135
CviAII	CATG	6 cut(s)	7, 495, 780, 985, 1228, 1246
CviQI	GTAC	3 cut(s)	708, 790, 1135
DdeI	CTNAG	5 cut(s)	16, 267, 368, 951, 1432
DpnI	GATC	5 cut(s)	355, 606, 620, 908, 1241
DpnII	GATC	5 cut(s)	353, 604, 618, 906, 1239
DraI	TTTAAA	1 cut(s)	1213
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	448, 1392
EarI	CTCTTC	2 cut(s)	448, 1392
Eco130I	CCWWGG	1 cut(s)	1046
Eco147I	AGGCCT	2 cut(s)	323, 450
Eco24I	GRGCYC	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	4 cut(s)	158, 194, 329, 1026
Eco57I	CTGAAG	3 cut(s)	429, 849, 1245
EcoNI	CCTNNNNNAGG	1 cut(s)	1050
EcoO109I	RGGNCCY	2 cut(s)	158, 253
EcoRI	GAATTC	1 cut(s)	1056
EcoRII	CCWGG	3 cut(s)	318, 1095, 1192
EcoT14I	CCWWGG	1 cut(s)	1046
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	1046
FaeI	CATG	6 cut(s)	10, 498, 783, 988, 1231, 1249
FaqI	GGGAC	2 cut(s)	642, 710
FatI	CATG	6 cut(s)	6, 494, 779, 984, 1227, 1245
Fnu4HI	GCNGC	2 cut(s)	189, 810
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	189, 810
FspBI	CTAG	6 cut(s)	68, 125, 609, 705, 806, 1199
GluI	GCNGC	2 cut(s)	189, 810
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	2 cut(s)	174, 891
HaeIII	GGCC	5 cut(s)	254, 275, 323, 450, 1207
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	6 cut(s)	10, 498, 783, 988, 1231, 1249
HincII	GTYRAC	2 cut(s)	56, 412
HindII	GTYRAC	2 cut(s)	56, 412
HindIII	AAGCTT	1 cut(s)	1385
HinfI	GANTC	6 cut(s)	20, 71, 97, 375, 1255, 1327
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	3 cut(s)	179, 731, 996
Hpy166II	GTNNAC	3 cut(s)	56, 197, 412
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	153, 679
Hpy8I	GTNNAC	3 cut(s)	56, 197, 412
HpyAV	CCTTC	5 cut(s)	292, 343, 461, 1197, 1269
HpyCH4III	ACNGT	7 cut(s)	484, 942, 1026, 1072, 1139, 1441, 1466
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	7 cut(s)	188, 536, 590, 812, 968, 1163, 1319
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 272, 320, 818, 1298
HpyF3I	CTNAG	5 cut(s)	16, 267, 368, 951, 1432
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	6 cut(s)	10, 498, 783, 988, 1231, 1249
Kzo9I	GATC	5 cut(s)	353, 604, 618, 906, 1239
LmnI	GCTCC	5 cut(s)	11, 38, 240, 347, 1363
Lsp1109I	GCAGC	2 cut(s)	200, 796
LweI	GCATC	2 cut(s)	252, 1172
MaeI	CTAG	6 cut(s)	68, 125, 609, 705, 806, 1199
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	5 cut(s)	259, 527, 555, 1020, 1441
MalI	GATC	5 cut(s)	355, 606, 620, 908, 1241
MboI	GATC	5 cut(s)	353, 604, 618, 906, 1239
MboII	GAAGA	7 cut(s)	15, 182, 217, 435, 851, 1110, 1409
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	3 cut(s)	316, 344, 492
MlsI	TGGCCA	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	384, 1321
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	3 cut(s)	686, 956, 1212
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	3 cut(s)	191, 767, 869
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	4 cut(s)	288, 320, 1097, 1194
Mva1269I	GAATGC	2 cut(s)	771, 1152
MvaI	CCWGG	3 cut(s)	320, 1097, 1194
MwoI	GCNNNNNNNGC	5 cut(s)	185, 272, 320, 818, 1298
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	5 cut(s)	353, 604, 618, 906, 1239
NlaIII	CATG	6 cut(s)	10, 498, 783, 988, 1231, 1249
NlaIV	GGNNCC	4 cut(s)	13, 331, 343, 1359
NmuCI	GTSAC	3 cut(s)	259, 555, 1020
NspI	RCATGY	1 cut(s)	783
PceI	AGGCCT	2 cut(s)	323, 450
PciI	ACATGT	1 cut(s)	779
PctI	GAATGC	2 cut(s)	771, 1152
PfeI	GAWTC	4 cut(s)	20, 71, 97, 1255
PflMI	CCANNNNNTGG	2 cut(s)	182, 979
PkrI	GCNGC	2 cut(s)	190, 811
PleI	GAGTC	2 cut(s)	383, 1321
PpsI	GAGTC	2 cut(s)	383, 1321
PpuMI	RGGWCCY	1 cut(s)	158
PscI	ACATGT	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	318, 1095, 1192
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	3 cut(s)	318, 1095, 1192
PspN4I	GGNNCC	4 cut(s)	13, 331, 343, 1359
PspPI	GGNCC	5 cut(s)	158, 194, 253, 329, 1026
PspPPI	RGGWCCY	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	353
PvuII	CAGCTG	3 cut(s)	191, 767, 869
RsaI	GTAC	3 cut(s)	709, 791, 1136
RsaNI	GTAC	3 cut(s)	708, 790, 1135
SaqAI	TTAA	3 cut(s)	686, 956, 1212
SatI	GCNGC	2 cut(s)	189, 810
Sau3AI	GATC	5 cut(s)	353, 604, 618, 906, 1239
Sau96I	GGNCC	5 cut(s)	158, 194, 253, 329, 1026
SchI	GAGTC	2 cut(s)	384, 1321
ScrFI	CCNGG	4 cut(s)	288, 320, 1097, 1194
SduI	GDGCHC	3 cut(s)	316, 344, 492
SfaNI	GCATC	2 cut(s)	252, 1172
SfcI	CTRYAG	2 cut(s)	483, 534
SinI	GGWCC	4 cut(s)	158, 194, 329, 1026
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SpeI	ACTAGT	1 cut(s)	124
SseBI	AGGCCT	2 cut(s)	323, 450
SsiI	CCGC	2 cut(s)	279, 1007
SspI	AATATT	1 cut(s)	471
SspMI	CTAG	6 cut(s)	68, 125, 609, 705, 806, 1199
StuI	AGGCCT	2 cut(s)	323, 450
StyD4I	CCNGG	4 cut(s)	286, 318, 1095, 1192
StyI	CCWWGG	1 cut(s)	1046
TaaI	ACNGT	7 cut(s)	484, 942, 1026, 1072, 1139, 1441, 1466
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	457, 909
TatI	WGTACW	2 cut(s)	707, 1134
TfiI	GAWTC	4 cut(s)	20, 71, 97, 1255
Tru1I	TTAA	3 cut(s)	686, 956, 1212
Tru9I	TTAA	3 cut(s)	686, 956, 1212
TscAI	CASTG	3 cut(s)	268, 376, 538
TseFI	GTSAC	3 cut(s)	259, 555, 1020
TseI	GCWGC	2 cut(s)	188, 809
Tsp45I	GTSAC	3 cut(s)	259, 555, 1020
TspDTI	ATGAA	2 cut(s)	223, 381
TspRI	CASTG	3 cut(s)	268, 376, 538
Van91I	CCANNNNNTGG	2 cut(s)	182, 979
VpaK11BI	GGWCC	4 cut(s)	158, 194, 329, 1026
XagI	CCTNNNNNAGG	1 cut(s)	1050
XapI	RAATTY	4 cut(s)	362, 688, 1056, 1157
XceI	RCATGY	1 cut(s)	783
XspI	CTAG	6 cut(s)	68, 125, 609, 705, 806, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.