Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017639

Physical Location & Seq

Genomic Coordinates Forward (+)

551684 .. 553561

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGCAAAGCATGAGAGCCTCAGAATTTTCCACAAGCTCCCAATCCCTTCTTGAACAAGAACAAACAGAATCACAACCTAAAATCACCACCAAGAATCCCAAGAAGCTAGCATTTCTTCCACTTGTCTTCCTCATCTACTTTGAAGTCTCTGGAGGCCCCTATGGTGAAGAATCAGCTGTGGGGGCTGCTGGTCCTCTCTTTGCCATTCTTGGCTTCCTCATCTTCCCCTTCATTTGGAGCATCCCTGAGGCCCTTGTCACGGCTGAGCTGGCCACCGCCTACCCCGGCAACGGCGGCTTTGTCATTTGGGCACACCAAGCTTTTGGTCCCTTCTGGGGCTCCCTCATGGGCTCTTGGAAATTCCTCAGTGGGGTCATCAACTTGGCTTCATATCCAATTCTTTGTGTAGACTATCTCAAGCTGGTAATTCCCATTTTCTCTTCTGGCCTACCTCGCTTTGTTGCTGTATTTGTCTCAACTTTGGTGCTATCGTTTCTCAACTACTCTGGTTTGAGTATAGTTGGTTACACTGCAGTAGGTTTAGGGATTGTGTCACTTTGTCCATTTATAATAATGTCTTTGGTTGCAATCCCCAAGATTGATCCAAGCAGATGGATCAGTTTGGGTCAGAAGGGTGTTAAAAGAGATTGGACATTATTTATCAATACCCTATTTTGGAACTTGAATTTTTGGGACAATGCTAGTACTCTAGCTGGTGAAGTAGAAGAACCCCAAAAGCTATACCCAAAAGCACTTTTTTCTGCTGGCATTCTCACATGTTTGGGTTACGTAATTCCTCTCCTGGCTGCAACTGGTGCTATTCCACTTGACCAAGAAGATTGGGTTGATGGGTATTTAGCTTCTGCTGGGGAAATGATTGCTGGGAAATGGCTGAAATTCTGGATTGAAATTGGTGCAGTTTTATCAATTATTGGACTGTTCGAGGCCCAGTTAAGTAGTTGTGCATACCAACTTTTAGGTATGGCAGACTTGGGAATTTTACCAATGATTTTTGGGGCAAGGTCCAAATGGTTCAACACCCCTTGCTTGGGGATGCTATTGGAATTTGCATCTTTTCTTTGGTTGAGGGTGAAGTTTCCAGCTCTGAAAAGGCCTTTTGAAGTTCCAATGGGCCTGCCAGGGCTGGTGGTTATGTGCTTGATTCCATCTGGTTTTTTGGTCTATGTGTTGGCTGTGGCCACCAAAGCTGTTTATTTGGTTAGTGCATTGATGACTCTGTTTGGTGTTGCCTGGTACCTTTTCATGAATCTCAGCAAATCAAAGATGTGGTTTGATTTCAAAATGGAAGAAGAAAAATTGGACAATGAGGAAAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

447

Amino Acids

49.18

Weight (kDa)

5.33

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45281
malus_domestica	MD11G1009900.v1.1
prunus_persica	Prupe.6G006400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082951
rosa_laevigata	RLG00000037004
rosa_multiflora	Rmu_sc0017035.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001470
rosa_rugosa	Rorug05G0481600
rosa_samantha	Rh5BG558200 Rh5CG581100 Rh5DG567000
rosa_wichuraiana	Rw5G049740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
Acc65I	GGTACC	1 cut(s)	1254
AccB1I	GGYRCC	1 cut(s)	1254
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	2 cut(s)	276, 294
AclWI	GGATC	2 cut(s)	596, 623
AcoI	YGGCCR	2 cut(s)	270, 1197
AcsI	RAATTY	6 cut(s)	23, 359, 685, 896, 996, 1064
AfaI	GTAC	2 cut(s)	706, 1256
AfiI	CCNNNNNNNGG	8 cut(s)	234, 259, 290, 335, 370, 675, 1048, 1049
AflIII	ACRYGT	1 cut(s)	776
AgsI	TTSAA	7 cut(s)	53, 143, 685, 908, 1036, 1121, 1300
AjnI	CCWGG	3 cut(s)	801, 1138, 1250
Alw26I	GTCTC	2 cut(s)	151, 478
AlwI	GGATC	2 cut(s)	596, 623
AoxI	GGCC	8 cut(s)	154, 249, 270, 445, 945, 1112, 1132, 1197
ApeKI	GCWGC	2 cut(s)	185, 806
ApoI	RAATTY	6 cut(s)	23, 359, 685, 896, 996, 1064
Asp718I	GGTACC	1 cut(s)	1254
AspS9I	GGNCC	7 cut(s)	155, 191, 250, 326, 946, 1023, 1132
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	4 cut(s)	76, 176, 728, 1102
AsuNHI	GCTAGC	1 cut(s)	106
AvaII	GGWCC	3 cut(s)	191, 326, 1023
AxyI	CCTNAGG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	313
BalI	TGGCCA	2 cut(s)	272, 1199
BanI	GGYRCC	1 cut(s)	1254
BanII	GRGCYC	2 cut(s)	341, 353
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	172, 793
BccI	CCATC	3 cut(s)	606, 842, 1174
BceAI	ACGGC	2 cut(s)	276, 307
BciT130I	CCWGG	3 cut(s)	803, 1140, 1252
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	151, 478
BfaI	CTAG	3 cut(s)	107, 702, 710
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	3 cut(s)	186, 295, 807
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	3 cut(s)	187, 296, 808
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	4 cut(s)	285, 803, 1140, 1252
Bme18I	GGWCC	3 cut(s)	191, 326, 1023
BmgT120I	GGNCC	7 cut(s)	155, 191, 250, 326, 946, 1023, 1132
BmiI	GGNNCC	4 cut(s)	157, 328, 340, 1256
BmrFI	CCNGG	4 cut(s)	285, 803, 1140, 1252
BmrI	ACTGGG	1 cut(s)	943
BmsI	GCATC	3 cut(s)	249, 1044, 1079
BmtI	GCTAGC	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	943
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	790
BsaJI	CCNNGG	2 cut(s)	283, 1139
Bsc4I	CCNNNNNNNGG	8 cut(s)	234, 259, 290, 335, 370, 675, 1048, 1049
Bse1I	ACTGG	2 cut(s)	817, 949
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	803, 1140, 1252
BseDI	CCNNGG	2 cut(s)	283, 1139
BseGI	GGATG	2 cut(s)	240, 1059
BseLI	CCNNNNNNNGG	8 cut(s)	234, 259, 290, 335, 370, 675, 1048, 1049
BseMII	CTCAG	5 cut(s)	33, 237, 255, 379, 1285
BseNI	ACTGG	2 cut(s)	817, 949
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	172, 793
BseYI	CCCAGC	2 cut(s)	866, 881
BsgI	GTGCAG	1 cut(s)	936
BshFI	GGCC	8 cut(s)	156, 251, 272, 447, 947, 1114, 1134, 1199
BshNI	GGYRCC	1 cut(s)	1254
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	2 cut(s)	312, 707
BslI	CCNNNNNNNGG	8 cut(s)	234, 259, 290, 335, 370, 675, 1048, 1049
BsmAI	GTCTC	2 cut(s)	151, 478
BsmFI	GGGAC	2 cut(s)	312, 707
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	8 cut(s)	156, 251, 272, 447, 947, 1114, 1134, 1199
Bsp1286I	GDGCHC	3 cut(s)	313, 341, 353
Bsp143I	GATC	2 cut(s)	601, 615
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	2 cut(s)	276, 294
BspANI	GGCC	8 cut(s)	156, 251, 272, 447, 947, 1114, 1134, 1199
BspCNI	CTCAG	5 cut(s)	32, 238, 256, 378, 1284
BspHI	TCATGA	1 cut(s)	1263
BspLI	GGNNCC	4 cut(s)	157, 328, 340, 1256
BspMAI	CTGCAG	1 cut(s)	535
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	2 cut(s)	596, 623
BspT107I	GGYRCC	1 cut(s)	1254
BsrI	ACTGG	2 cut(s)	817, 949
BssECI	CCNNGG	2 cut(s)	283, 1139
BssMI	GATC	2 cut(s)	601, 615
Bst2UI	CCWGG	3 cut(s)	803, 1140, 1252
Bst4CI	ACNGT	1 cut(s)	939
Bst6I	CTCTTC	1 cut(s)	445
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	790
BstC8I	GCNNGC	4 cut(s)	108, 270, 766, 1136
BstDEI	CTNAG	6 cut(s)	19, 246, 264, 365, 1271, 1338
BstF5I	GGATG	2 cut(s)	240, 1059
BstKTI	GATC	2 cut(s)	604, 618
BstMAI	GTCTC	2 cut(s)	151, 478
BstMBI	GATC	2 cut(s)	601, 615
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 269, 294, 317, 453, 815, 1205
BstNI	CCWGG	3 cut(s)	803, 1140, 1252
BstNSI	RCATGY	1 cut(s)	780
BstSCI	CCNGG	4 cut(s)	283, 801, 1138, 1250
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	313
BstSNI	TACGTA	1 cut(s)	790
BstV1I	GCAGC	2 cut(s)	172, 793
BstV2I	GAAGAC	1 cut(s)	118
BstXI	CCANNNNNNTGG	2 cut(s)	323, 612
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	8 cut(s)	156, 251, 272, 447, 947, 1114, 1134, 1199
BtsCI	GGATG	2 cut(s)	240, 1059
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	373, 528
Cac8I	GCNNGC	4 cut(s)	108, 270, 766, 1136
CciI	TCATGA	1 cut(s)	1263
Cfr13I	GGNCC	7 cut(s)	155, 191, 250, 326, 946, 1023, 1132
Csp6I	GTAC	2 cut(s)	705, 1255
CviAII	CATG	4 cut(s)	10, 346, 777, 1264
CviQI	GTAC	2 cut(s)	705, 1255
DdeI	CTNAG	6 cut(s)	19, 246, 264, 365, 1271, 1338
DpnI	GATC	2 cut(s)	603, 617
DpnII	GATC	2 cut(s)	601, 615
EaeI	YGGCCR	2 cut(s)	270, 1197
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Eco105I	TACGTA	1 cut(s)	790
Eco147I	AGGCCT	1 cut(s)	1114
Eco24I	GRGCYC	2 cut(s)	341, 353
Eco47I	GGWCC	3 cut(s)	191, 326, 1023
Eco81I	CCTNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	2 cut(s)	155, 250
EcoRII	CCWGG	3 cut(s)	801, 1138, 1250
EcoT38I	GRGCYC	2 cut(s)	341, 353
FaeI	CATG	4 cut(s)	13, 349, 780, 1267
FaqI	GGGAC	2 cut(s)	312, 707
FatI	CATG	4 cut(s)	9, 345, 776, 1263
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	3 cut(s)	186, 295, 807
FokI	GGATG	2 cut(s)	227, 1066
FriOI	GRGCYC	2 cut(s)	341, 353
Fsp4HI	GCNGC	3 cut(s)	186, 295, 807
FspBI	CTAG	3 cut(s)	107, 702, 710
GluI	GCNGC	3 cut(s)	186, 295, 807
GsaI	CCCAGC	2 cut(s)	870, 885
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	8 cut(s)	156, 251, 272, 447, 947, 1114, 1134, 1199
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	4 cut(s)	13, 349, 780, 1267
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	6 cut(s)	68, 94, 170, 1162, 1234, 1267
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	4 cut(s)	76, 176, 728, 1102
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	3 cut(s)	22, 630, 1107
Hpy188III	TCNNGA	4 cut(s)	50, 150, 901, 1264
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	4 cut(s)	56, 238, 340, 625
HpyCH4III	ACNGT	1 cut(s)	939
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	8 cut(s)	4, 533, 587, 809, 917, 965, 1070, 1226
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 269, 294, 317, 453, 815, 1205
HpyF3I	CTNAG	6 cut(s)	19, 246, 264, 365, 1271, 1338
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	4 cut(s)	13, 349, 780, 1267
KpnI	GGTACC	1 cut(s)	1258
Kzo9I	GATC	2 cut(s)	601, 615
LmnI	GCTCC	3 cut(s)	41, 237, 344
Lsp1109I	GCAGC	2 cut(s)	172, 793
LweI	GCATC	3 cut(s)	249, 1044, 1079
MaeI	CTAG	3 cut(s)	107, 702, 710
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	4 cut(s)	256, 524, 552, 785
MalI	GATC	2 cut(s)	603, 617
MboI	GATC	2 cut(s)	601, 615
MboII	GAAGA	9 cut(s)	107, 118, 179, 214, 432, 737, 848, 1319, 1322
MhlI	GDGCHC	3 cut(s)	313, 341, 353
MlsI	TGGCCA	2 cut(s)	272, 1199
MluNI	TGGCCA	2 cut(s)	272, 1199
MlyI	GAGTC	1 cut(s)	1228
Mox20I	TGGCCA	2 cut(s)	272, 1199
MscI	TGGCCA	2 cut(s)	272, 1199
MseI	TTAA	2 cut(s)	639, 953
Msp20I	TGGCCA	2 cut(s)	272, 1199
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	4 cut(s)	285, 803, 1140, 1252
Mva1269I	GAATGC	1 cut(s)	768
MvaI	CCWGG	3 cut(s)	803, 1140, 1252
MwoI	GCNNNNNNNGC	7 cut(s)	182, 269, 294, 317, 453, 815, 1205
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	601, 615
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	4 cut(s)	13, 349, 780, 1267
NlaIV	GGNNCC	4 cut(s)	157, 328, 340, 1256
NmuCI	GTSAC	2 cut(s)	256, 552
NspI	RCATGY	1 cut(s)	780
PagI	TCATGA	1 cut(s)	1263
PceI	AGGCCT	1 cut(s)	1114
PciI	ACATGT	1 cut(s)	776
PctI	GAATGC	1 cut(s)	768
PfeI	GAWTC	5 cut(s)	68, 94, 170, 1162, 1267
PkrI	GCNGC	3 cut(s)	187, 296, 808
PleI	GAGTC	1 cut(s)	1228
PpsI	GAGTC	1 cut(s)	1228
Ppu21I	YACGTR	1 cut(s)	790
PscI	ACATGT	1 cut(s)	776
PsiI	TTATAA	1 cut(s)	569
Psp6I	CCWGG	3 cut(s)	801, 1138, 1250
PspFI	CCCAGC	2 cut(s)	866, 881
PspGI	CCWGG	3 cut(s)	801, 1138, 1250
PspN4I	GGNNCC	4 cut(s)	157, 328, 340, 1256
PspPI	GGNCC	7 cut(s)	155, 191, 250, 326, 946, 1023, 1132
PstI	CTGCAG	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	706, 1256
RsaNI	GTAC	2 cut(s)	705, 1255
SaqAI	TTAA	2 cut(s)	639, 953
SatI	GCNGC	3 cut(s)	186, 295, 807
Sau3AI	GATC	2 cut(s)	601, 615
Sau96I	GGNCC	7 cut(s)	155, 191, 250, 326, 946, 1023, 1132
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	1 cut(s)	1228
ScrFI	CCNGG	4 cut(s)	285, 803, 1140, 1252
SduI	GDGCHC	3 cut(s)	313, 341, 353
SfaNI	GCATC	3 cut(s)	249, 1044, 1079
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	3 cut(s)	191, 326, 1023
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SnaBI	TACGTA	1 cut(s)	790
SseBI	AGGCCT	1 cut(s)	1114
SsiI	CCGC	2 cut(s)	276, 294
SspMI	CTAG	3 cut(s)	107, 702, 710
StuI	AGGCCT	1 cut(s)	1114
StyD4I	CCNGG	4 cut(s)	283, 801, 1138, 1250
TaaI	ACNGT	1 cut(s)	939
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	1 cut(s)	942
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	5 cut(s)	68, 94, 170, 1162, 1267
Tru1I	TTAA	2 cut(s)	639, 953
Tru9I	TTAA	2 cut(s)	639, 953
TscAI	CASTG	2 cut(s)	373, 535
TseFI	GTSAC	2 cut(s)	256, 552
TseI	GCWGC	2 cut(s)	185, 806
Tsp45I	GTSAC	2 cut(s)	256, 552
TspDTI	ATGAA	4 cut(s)	220, 378, 1252, 1280
TspRI	CASTG	2 cut(s)	373, 535
VpaK11BI	GGWCC	3 cut(s)	191, 326, 1023
XapI	RAATTY	6 cut(s)	23, 359, 685, 896, 996, 1064
XceI	RCATGY	1 cut(s)	780
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	3 cut(s)	107, 702, 710
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.