Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017279

Physical Location & Seq

Genomic Coordinates Forward (+)

37607278 .. 37609510

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGAAACACCCCAACAATGTCCCAGTTCCAAAAAGCTTCTTGCAGATGAAGAAAAAGAATGCCTCAAAGAACCTCCATCTATCAGTAAGATCACAACCAAAAAACTAGCTTTCATCCCTTTACTCTTCCTCATCTACTTTCAAGTCTCTGGTGGACCTTATGGCACAGAAGCCATCGTTGGTGCTGGAGGTCCTTTCTATGCAATCCTTGGCTTTGTCATCTTCCCAATCCTCTGGAGTGTACCCGAGGCCCTCATCACGGCTGAACTCTCCACCGCCTTTCCTGGCAATGGTGGCTTTGTCATATGGACTCACCAAGCCTTTGGTCCCTTCTGGGGCTTCCTCATTGGGTATTGGAAGTTCCTTAGTGCTGTCATAAACTTATCTTCATACCCACTACTCTGTTTAAACTACATTGATCCAGAGCTTCTAGCTTTATCCTCAAGCCTACCTCACTATTTTATAATCTCTGTTTCAACTCTGTTTCTCTCTGTTCTTAACTTCACTGGTTTGCCTATAGTTGGTTATGCTTCAATATCTTTGGGGATTCTGTCATACTTGCCCTTTATAGTAATTTCCCTTTTTGCAATTCCCCAAATTGATCCTAGAAAATGGGCACTTTTAGGCCAAAAGGGTAGGAAAAAAGATTGGCCTTTGTTCTTCAATACCCTCTTTTGGAATTTGAATTGTTGGGACAATGTCAGTACTTTAGTGGTAGAGGGAGTTACAACACCTTCAAAAACATTACCAAAAGCATATCTCTCAACTGGATTGATCACTTTCTTTGCTCATTTAATACCTCTTCTAGCTTCAACTGGGGCTATGAAACTTGACCTAGATGATTGGGTAACTGGATATTACACAGAGGTGGGAGAAAAAATTGTGGGGAAATATTTCAAAAGGTGGGTTAGGCTTGGAGCCTTTTTATCTGGTATTGGTGTGTTTCAGTCCCAGCTGAGCAGTTGTTCGTATCAGCTTCTAGGTATGACTGAATTAGGGTTATTACCAACAATTTTCGGTACACGATCCAAACGGTTCAACACTCCTTGGGTGGGGATTTTGATCTCAACAGTGATATCGATCTTAGTTTCATACATGAAATTTAGGCATGTCACATCAGTAGTGAATGTTTTCAACAGTCTGGGGATGCTGTTCGAATTCACAGCTTTCATTTACTTGAGGATGAAGTTTCCTGATGTGGATAGGCCTTTCAAAGTTCCAGTTACAAAGCTGCGGAGTCTGATAGCAATGTGCTTCTTTCCATTTGGGTTTTTGTTGTATGTGGTTTGTGCTGGGCACCCAATTGTCTATCTGGTTGTTGCTTTGCTGACTCTGTTGGGCGTTCTTTGGTATTTCTGCATGAGGATGTTCCAGGCTAAGATGTGGATTGACTTCAACCATGTTATGAAAAAGCTAGCAGATTATGAAAATTTGGGCTACTATGATCAGATTGTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

487

Amino Acids

54.71

Weight (kDa)

9.04

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	47 - 430	1e-25	Amino acid permease
AA_permease	PF00324	55 - 431	8.4e-14	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45290
malus_domestica	MD03G1006600.v1.1 MD11G1009700.v1.1
prunus_persica	Prupe.6G006300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082961
rosa_laevigata	RLG00000037005
rosa_multiflora	Rmu_sc0017035.1_g000001
rosa_rugosa	Rorug05G0481700
rosa_samantha	Rh5AG531300 Rh5BG558300 Rh5CG581200 Rh5DG567100
rosa_wichuraiana	Rw5G049730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	1296
AciI	CCGC	2 cut(s)	276, 1234
AclWI	GGATC	3 cut(s)	413, 596, 1020
AcsI	RAATTY	4 cut(s)	679, 1100, 1157, 1429
AfaI	GTAC	3 cut(s)	243, 706, 1021
AfiI	CCNNNNNNNGG	6 cut(s)	259, 290, 335, 521, 675, 1052
AjnI	CCWGG	2 cut(s)	283, 1371
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AleI	CACNNNNGTG	1 cut(s)	866
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	3 cut(s)	413, 596, 1020
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	4 cut(s)	249, 625, 650, 1205
ApeKI	GCWGC	1 cut(s)	1231
ApoI	RAATTY	4 cut(s)	679, 1100, 1157, 1429
Asp700I	GAANNNNTTC	2 cut(s)	893, 1130
AspS9I	GGNCC	4 cut(s)	155, 191, 250, 326
AsuHPI	GGTGA	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	1155
AsuNHI	GCTAGC	1 cut(s)	1414
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	3 cut(s)	155, 191, 326
BaeGI	GKGCMC	2 cut(s)	619, 1299
BanI	GGYRCC	1 cut(s)	1296
BbvI	GCAGC	1 cut(s)	1218
BccI	CCATC	2 cut(s)	85, 182
BceAI	ACGGC	1 cut(s)	276
BciT130I	CCWGG	2 cut(s)	285, 1373
BclI	TGATCA	2 cut(s)	774, 1444
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	7 cut(s)	107, 431, 606, 806, 836, 980, 1415
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	1 cut(s)	1232
BlpI	GCTNAGC	1 cut(s)	956
BlsI	GCNGC	1 cut(s)	1233
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	2 cut(s)	285, 1373
Bme18I	GGWCC	3 cut(s)	155, 191, 326
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	4 cut(s)	155, 191, 250, 326
BmiI	GGNNCC	3 cut(s)	328, 919, 1298
BmrFI	CCNGG	2 cut(s)	285, 1373
BmrI	ACTGGG	2 cut(s)	18, 825
BmsI	GCATC	1 cut(s)	1137
BmtI	GCTAGC	1 cut(s)	1418
BmuI	ACTGGG	2 cut(s)	18, 825
BpmI	CTGGAG	2 cut(s)	207, 256
Bpu1102I	GCTNAGC	1 cut(s)	956
Bpu14I	TTCGAA	1 cut(s)	1155
BpuEI	CTTGAG	2 cut(s)	427, 1198
Bsa29I	ATCGAT	1 cut(s)	1079
BsaBI	GATNNNNATC	2 cut(s)	1061, 1079
BsaJI	CCNNGG	3 cut(s)	208, 246, 1046
Bsc4I	CCNNNNNNNGG	6 cut(s)	259, 290, 335, 521, 675, 1052
Bse1I	ACTGG	6 cut(s)	24, 511, 772, 820, 856, 1220
Bse3DI	GCAATG	2 cut(s)	295, 1254
Bse8I	GATNNNNATC	2 cut(s)	1061, 1079
BseBI	CCWGG	2 cut(s)	285, 1373
BseCI	ATCGAT	1 cut(s)	1079
BseDI	CCNNGG	3 cut(s)	208, 246, 1046
BseGI	GGATG	4 cut(s)	114, 1152, 1188, 1371
BseJI	GATNNNNATC	2 cut(s)	1061, 1079
BseLI	CCNNNNNNNGG	6 cut(s)	259, 290, 335, 521, 675, 1052
BseMI	GCAATG	2 cut(s)	295, 1254
BseMII	CTCAG	1 cut(s)	947
BseNI	ACTGG	6 cut(s)	24, 511, 772, 820, 856, 1220
BseSI	GKGCMC	2 cut(s)	619, 1299
BseXI	GCAGC	1 cut(s)	1218
BseYI	CCCAGC	2 cut(s)	951, 1292
BshFI	GGCC	4 cut(s)	251, 627, 652, 1207
BshNI	GGYRCC	1 cut(s)	1296
BshVI	ATCGAT	1 cut(s)	1079
BsiHKCI	CYCGRG	1 cut(s)	245
BslFI	GGGAC	4 cut(s)	6, 312, 707, 934
BslI	CCNNNNNNNGG	6 cut(s)	259, 290, 335, 521, 675, 1052
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	4 cut(s)	6, 312, 707, 934
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	4 cut(s)	251, 627, 652, 1207
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	1155
Bsp1286I	GDGCHC	2 cut(s)	619, 1299
Bsp143I	GATC	8 cut(s)	90, 418, 601, 774, 1025, 1062, 1080, 1444
Bsp1720I	GCTNAGC	1 cut(s)	956
BspACI	CCGC	2 cut(s)	276, 1234
BspANI	GGCC	4 cut(s)	251, 627, 652, 1207
BspCNI	CTCAG	1 cut(s)	948
BspDI	ATCGAT	1 cut(s)	1079
BspLI	GGNNCC	3 cut(s)	328, 919, 1298
BspOI	GCTAGC	1 cut(s)	1418
BspPI	GGATC	3 cut(s)	413, 596, 1020
BspT104I	TTCGAA	1 cut(s)	1155
BspT107I	GGYRCC	1 cut(s)	1296
BsrDI	GCAATG	2 cut(s)	295, 1254
BsrI	ACTGG	6 cut(s)	24, 511, 772, 820, 856, 1220
BssECI	CCNNGG	3 cut(s)	208, 246, 1046
BssMI	GATC	8 cut(s)	90, 418, 601, 774, 1025, 1062, 1080, 1444
BssT1I	CCWWGG	2 cut(s)	208, 1046
Bst2UI	CCWGG	2 cut(s)	285, 1373
Bst4CI	ACNGT	3 cut(s)	1035, 1072, 1139
Bst6I	CTCTTC	2 cut(s)	131, 807
BstBI	TTCGAA	1 cut(s)	1155
BstC8I	GCNNGC	1 cut(s)	1416
BstDEI	CTNAG	4 cut(s)	365, 956, 1084, 1377
BstF5I	GGATG	4 cut(s)	114, 1152, 1188, 1371
BstKTI	GATC	8 cut(s)	93, 421, 604, 777, 1028, 1065, 1083, 1447
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	8 cut(s)	90, 418, 601, 774, 1025, 1062, 1080, 1444
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	2 cut(s)	285, 1373
BstNSI	RCATGY	1 cut(s)	1112
BstSCI	CCNGG	2 cut(s)	283, 1371
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	2 cut(s)	619, 1299
BstV1I	GCAGC	1 cut(s)	1218
BstXI	CCANNNNNNTGG	2 cut(s)	234, 323
Bsu15I	ATCGAT	1 cut(s)	1079
BsuRI	GGCC	4 cut(s)	251, 627, 652, 1207
BsuTUI	ATCGAT	1 cut(s)	1079
BtsCI	GGATG	4 cut(s)	114, 1152, 1188, 1371
BtsIMutI	CAGTG	2 cut(s)	504, 1077
Cac8I	GCNNGC	1 cut(s)	1416
Cfr13I	GGNCC	4 cut(s)	155, 191, 250, 326
ClaI	ATCGAT	1 cut(s)	1079
Csp6I	GTAC	3 cut(s)	242, 705, 1020
CviAII	CATG	4 cut(s)	1096, 1109, 1360, 1400
CviQI	GTAC	3 cut(s)	242, 705, 1020
DdeI	CTNAG	4 cut(s)	365, 956, 1084, 1377
DpnI	GATC	8 cut(s)	92, 420, 603, 776, 1027, 1064, 1082, 1446
DpnII	GATC	8 cut(s)	90, 418, 601, 774, 1025, 1062, 1080, 1444
DraI	TTTAAA	1 cut(s)	408
Eam1104I	CTCTTC	2 cut(s)	131, 807
EarI	CTCTTC	2 cut(s)	131, 807
Eco130I	CCWWGG	2 cut(s)	208, 1046
Eco147I	AGGCCT	1 cut(s)	1207
Eco32I	GATATC	1 cut(s)	1077
Eco47I	GGWCC	3 cut(s)	155, 191, 326
Eco88I	CYCGRG	1 cut(s)	245
EcoO109I	RGGNCCY	2 cut(s)	191, 250
EcoRI	GAATTC	1 cut(s)	1157
EcoRII	CCWGG	2 cut(s)	283, 1371
EcoRV	GATATC	1 cut(s)	1077
EcoT14I	CCWWGG	2 cut(s)	208, 1046
ErhI	CCWWGG	2 cut(s)	208, 1046
FaeI	CATG	4 cut(s)	1099, 1112, 1363, 1403
FaqI	GGGAC	4 cut(s)	6, 312, 707, 934
FatI	CATG	4 cut(s)	1095, 1108, 1359, 1399
FauNDI	CATATG	1 cut(s)	305
FbaI	TGATCA	2 cut(s)	774, 1444
Fnu4HI	GCNGC	1 cut(s)	1232
FokI	GGATG	4 cut(s)	101, 1159, 1195, 1378
Fsp4HI	GCNGC	1 cut(s)	1232
FspBI	CTAG	7 cut(s)	107, 431, 606, 806, 836, 980, 1415
GluI	GCNGC	1 cut(s)	1232
GsaI	CCCAGC	2 cut(s)	955, 1296
GsuI	CTGGAG	2 cut(s)	207, 256
HaeIII	GGCC	4 cut(s)	251, 627, 652, 1207
Hin1II	CATG	4 cut(s)	1099, 1112, 1363, 1403
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	4 cut(s)	310, 547, 1237, 1330
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	3 cut(s)	155, 242, 1022
Hpy188I	TCNGA	2 cut(s)	1242, 1449
Hpy188III	TCNNGA	3 cut(s)	235, 422, 1193
Hpy8I	GTNNAC	3 cut(s)	155, 242, 1022
HpyAV	CCTTC	2 cut(s)	340, 744
HpyCH4III	ACNGT	3 cut(s)	1035, 1072, 1139
HpyCH4V	TGCA	4 cut(s)	44, 203, 587, 1359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	4 cut(s)	365, 956, 1084, 1377
Hsp92II	CATG	4 cut(s)	1099, 1112, 1363, 1403
Ksp22I	TGATCA	2 cut(s)	774, 1444
Kzo9I	GATC	8 cut(s)	90, 418, 601, 774, 1025, 1062, 1080, 1444
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	1 cut(s)	1218
LweI	GCATC	1 cut(s)	1137
MaeI	CTAG	7 cut(s)	107, 431, 606, 806, 836, 980, 1415
MaeIII	GTNAC	4 cut(s)	724, 847, 1111, 1222
MalI	GATC	8 cut(s)	92, 420, 603, 776, 1027, 1064, 1082, 1446
MboI	GATC	8 cut(s)	90, 418, 601, 774, 1025, 1062, 1080, 1444
MboII	GAAGA	6 cut(s)	62, 118, 214, 378, 652, 794
MfeI	CAATTG	1 cut(s)	1302
MhlI	GDGCHC	2 cut(s)	619, 1299
MlyI	GAGTC	3 cut(s)	304, 1246, 1324
MroXI	GAANNNNTTC	2 cut(s)	893, 1130
MseI	TTAA	3 cut(s)	407, 498, 794
MslI	CAYNNNNRTG	2 cut(s)	866, 1364
MspA1I	CMGCKG	1 cut(s)	955
MspR9I	CCNGG	2 cut(s)	285, 1373
MssI	GTTTAAAC	1 cut(s)	408
MunI	CAATTG	1 cut(s)	1302
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	2 cut(s)	285, 1373
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	8 cut(s)	90, 418, 601, 774, 1025, 1062, 1080, 1444
NheI	GCTAGC	1 cut(s)	1414
NlaIII	CATG	4 cut(s)	1099, 1112, 1363, 1403
NlaIV	GGNNCC	3 cut(s)	328, 919, 1298
NmuCI	GTSAC	1 cut(s)	1111
NspI	RCATGY	1 cut(s)	1112
NspV	TTCGAA	1 cut(s)	1155
OliI	CACNNNNGTG	1 cut(s)	866
PceI	AGGCCT	1 cut(s)	1207
PctI	GAATGC	1 cut(s)	65
PdmI	GAANNNNTTC	2 cut(s)	893, 1130
PfeI	GAWTC	1 cut(s)	547
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	1 cut(s)	1233
PleI	GAGTC	3 cut(s)	304, 1245, 1324
PmeI	GTTTAAAC	1 cut(s)	408
PpsI	GAGTC	3 cut(s)	304, 1245, 1324
PpuMI	RGGWCCY	1 cut(s)	191
PsiI	TTATAA	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	283, 1371
PspFI	CCCAGC	2 cut(s)	951, 1292
PspGI	CCWGG	2 cut(s)	283, 1371
PspN4I	GGNNCC	3 cut(s)	328, 919, 1298
PspPI	GGNCC	4 cut(s)	155, 191, 250, 326
PspPPI	RGGWCCY	1 cut(s)	191
PsrI	GAACNNNNNNTAC	2 cut(s)	344, 376
PsyI	GACNNNGTC	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	955
RsaI	GTAC	3 cut(s)	243, 706, 1021
RsaNI	GTAC	3 cut(s)	242, 705, 1020
RseI	CAYNNNNRTG	2 cut(s)	866, 1364
SaqAI	TTAA	3 cut(s)	407, 498, 794
SatI	GCNGC	1 cut(s)	1232
Sau3AI	GATC	8 cut(s)	90, 418, 601, 774, 1025, 1062, 1080, 1444
Sau96I	GGNCC	4 cut(s)	155, 191, 250, 326
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	3 cut(s)	304, 1246, 1324
ScrFI	CCNGG	2 cut(s)	285, 1373
SduI	GDGCHC	2 cut(s)	619, 1299
SfaNI	GCATC	1 cut(s)	1137
SfcI	CTRYAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	1155
SinI	GGWCC	3 cut(s)	155, 191, 326
SmiMI	CAYNNNNRTG	2 cut(s)	866, 1364
SmlI	CTYRAG	2 cut(s)	442, 1177
SmoI	CTYRAG	2 cut(s)	442, 1177
SseBI	AGGCCT	1 cut(s)	1207
SsiI	CCGC	2 cut(s)	276, 1234
SspI	AATATT	1 cut(s)	893
SspMI	CTAG	7 cut(s)	107, 431, 606, 806, 836, 980, 1415
StuI	AGGCCT	1 cut(s)	1207
StyD4I	CCNGG	2 cut(s)	283, 1371
StyI	CCWWGG	2 cut(s)	208, 1046
TaaI	ACNGT	3 cut(s)	1035, 1072, 1139
TaqI	TCGA	2 cut(s)	1079, 1155
TatI	WGTACW	1 cut(s)	704
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	3 cut(s)	407, 498, 794
Tru9I	TTAA	3 cut(s)	407, 498, 794
TscAI	CASTG	2 cut(s)	511, 1077
TseFI	GTSAC	1 cut(s)	1111
TseI	GCWGC	1 cut(s)	1231
Tsp45I	GTSAC	1 cut(s)	1111
TspRI	CASTG	2 cut(s)	511, 1077
Tth111I	GACNNNGTC	1 cut(s)	698
VpaK11BI	GGWCC	3 cut(s)	155, 191, 326
XapI	RAATTY	4 cut(s)	679, 1100, 1157, 1429
XceI	RCATGY	1 cut(s)	1112
XmnI	GAANNNNTTC	2 cut(s)	893, 1130
XspI	CTAG	7 cut(s)	107, 431, 606, 806, 836, 980, 1415
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.