Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017279

Physical Location & Seq

Genomic Coordinates Forward (+)

87450179 .. 87451737

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAAAACATCCCAACATTCTCCCAGTTCAGAAAAGCTTCTTGAAGGTGAAGAGAAACAATGCCTAAAAGAACCTCCAGCTATCACTAAGACCACAACCAAAAAACTAGCTTTCATCCCATTACTCTGCCTCATCTACTTTCAAGTCTCTGGTGGCCCTTATGGCACAGAAACCATGATTGGTGCTGGGGGTACTTTCTATGCAATCCTTGGCATCATATTCTTCCCAATCCTCTGGAGCGCTCCCGAGGCGCTCATCACTGCTGAACTGTCCACCGCCTTTCCCGGCAATGGTGGCTTTGTCATATGGACTCACCACGCCTTTGGTCCCTTCTGGGGCTTCCTCGTTGGGTTTTGGAAGTTCCTCAGTGCTGTCATAAACTTATCTTCATACCCAATTATCTGTTTACGCTACATTGATCCAGATCTTCCACTTTTCTCCTCAAGCACACCTCACTATCTTGTAATCTCTGTTTCGACTCTGTTTCTCTCTGTTCTCAACTTTACTGGTTTGCATATAGTAGGTTATGCTTCACTATCTTTGGGGATTCTGTCATACCTGCCCTTTTTAGTAATTACTTGTTTTGCAATTCCCCAAATTGATCCTAGCAACTGGGTACTTTTAGGCCAAAAGGGTAAGAAAAAAGATTGGCCTATGTTCTTTAATACCCTCTTTTGGAACATGAATTGTTGGGACAATGTTAGTACTTTAGTATCAGAGGGTGTCACACAACCCTCAAAAACATTACCAAAAGCATTTCTCTCAAGTGGATTGATCACTTGCTTTGCTCATTTAGTACCTCTTCTAGCTTCAATTGGGGCTATGAAAATTGACCTAGATGATTGGGTTGATGGATATTACACAATTGTGGGAGAAAAAATTGTGGGGAAAAAATTCAAAAGGTGGGTTAGGATTGGAGCCTTTTTATCTGGTATTGGTGTTTTTCAGTCCCAGCTGAGCAGTTGTTCATATCAGCTTCTAGGTATGACTGAATTAGGGTTGTTACCAACATTTTTCAGTGCACGGTCCAAACGGTTCAACACTCCTTGGTCTGGGGATGATGTTCGAATTCGCGGCTTTTATTTCCTTGAGGATGAAGTTTCCAGAAGTGAACAGGCCCTTCAAAGTTCCACTTACAAAGCTGAGGAGTCTGATAGCAATGTGCTTCATTCCATGTGGGTTTTTATTGCTAAGATTTGGCTTGACTTCAACCATGTTATGAAAAAGCTAGCAGCTTATGAAAATTTGGGCTACTATGATCAGATTGTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

425

Amino Acids

47.42

Weight (kDa)

7.59

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	49 - 351	3e-27	Amino acid permease
AA_permease	PF00324	57 - 351	1.1e-08	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45290
malus_domestica	MD03G1006600.v1.1 MD11G1009700.v1.1
prunus_persica	Prupe.6G006300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082961
rosa_laevigata	RLG00000037005
rosa_multiflora	Rmu_sc0017035.1_g000001
rosa_rugosa	Rorug05G0481700
rosa_samantha	Rh5AG531300 Rh5BG558300 Rh5CG581200 Rh5DG567100
rosa_wichuraiana	Rw5G049730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	567
AccII	CGCG	1 cut(s)	1074
AciI	CCGC	2 cut(s)	276, 1074
AclWI	GGATC	2 cut(s)	413, 596
AcsI	RAATTY	3 cut(s)	893, 1068, 1243
AfaI	GTAC	4 cut(s)	193, 618, 706, 798
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	4 cut(s)	290, 335, 675, 1052
AgsI	TTSAA	7 cut(s)	44, 143, 813, 898, 1039, 1124, 1210
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AleI	CACNNNNGTG	1 cut(s)	866
AluBI	AGCT	9 cut(s)	37, 80, 110, 809, 955, 976, 1142, 1228, 1235
AluI	AGCT	9 cut(s)	37, 80, 110, 809, 955, 976, 1142, 1228, 1235
Alw21I	GWGCWC	1 cut(s)	1024
Alw26I	GTCTC	1 cut(s)	151
Alw44I	GTGCAC	1 cut(s)	1020
AlwI	GGATC	2 cut(s)	413, 596
Ama87I	CYCGRG	1 cut(s)	245
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	4 cut(s)	154, 625, 650, 1116
ApaLI	GTGCAC	1 cut(s)	1020
ApeKI	GCWGC	1 cut(s)	1232
ApoI	RAATTY	3 cut(s)	893, 1068, 1243
Asp700I	GAANNNNTTC	2 cut(s)	36, 893
AspLEI	GCGC	2 cut(s)	242, 253
AspS9I	GGNCC	4 cut(s)	155, 326, 1026, 1117
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	59, 305
AsuII	TTCGAA	1 cut(s)	1066
AsuNHI	GCTAGC	1 cut(s)	1228
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	326, 1026
BaeGI	GKGCMC	1 cut(s)	1024
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
Bbv12I	GWGCWC	1 cut(s)	1024
BbvCI	CCTCAGC	1 cut(s)	1143
BbvI	GCAGC	1 cut(s)	1244
BccI	CCATC	1 cut(s)	845
BclI	TGATCA	2 cut(s)	774, 1258
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	6 cut(s)	107, 606, 806, 836, 980, 1229
BfoI	RGCGCY	2 cut(s)	243, 254
BfuAI	ACCTGC	1 cut(s)	567
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	2 cut(s)	1075, 1233
BlpI	GCTNAGC	1 cut(s)	956
BlsI	GCNGC	2 cut(s)	1076, 1234
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	2 cut(s)	326, 1026
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	4 cut(s)	155, 326, 1026, 1117
BmiI	GGNNCC	2 cut(s)	328, 919
BmrFI	CCNGG	1 cut(s)	285
BmrI	ACTGGG	2 cut(s)	18, 622
BmsI	GCATC	1 cut(s)	222
BmtI	GCTAGC	1 cut(s)	1232
BmuI	ACTGGG	2 cut(s)	18, 622
BpmI	CTGGAG	2 cut(s)	60, 256
Bpu10I	CCTNAGC	1 cut(s)	1143
Bpu1102I	GCTNAGC	1 cut(s)	956
Bpu14I	TTCGAA	1 cut(s)	1066
BpuEI	CTTGAG	3 cut(s)	427, 748, 1109
BpuMI	CCSGG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	208, 246, 1046
Bsc4I	CCNNNNNNNGG	4 cut(s)	290, 335, 675, 1052
Bse1I	ACTGG	3 cut(s)	24, 511, 617
Bse3DI	GCAATG	2 cut(s)	295, 1165
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	3 cut(s)	208, 246, 1046
BseGI	GGATG	4 cut(s)	8, 114, 1063, 1099
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	290, 335, 675, 1052
BseMI	GCAATG	2 cut(s)	295, 1165
BseMII	CTCAG	3 cut(s)	379, 947, 1134
BseNI	ACTGG	3 cut(s)	24, 511, 617
BseRI	GAGGAG	2 cut(s)	430, 1160
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	1 cut(s)	1244
BseYI	CCCAGC	2 cut(s)	185, 951
Bsh1236I	CGCG	1 cut(s)	1074
BshFI	GGCC	4 cut(s)	156, 627, 652, 1118
BsiHKAI	GWGCWC	1 cut(s)	1024
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	3 cut(s)	312, 707, 934
BslI	CCNNNNNNNGG	4 cut(s)	290, 335, 675, 1052
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	3 cut(s)	312, 707, 934
BsnI	GGCC	4 cut(s)	156, 627, 652, 1118
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	1066
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp143I	GATC	5 cut(s)	418, 424, 601, 774, 1258
Bsp1720I	GCTNAGC	1 cut(s)	956
BspACI	CCGC	2 cut(s)	276, 1074
BspANI	GGCC	4 cut(s)	156, 627, 652, 1118
BspCNI	CTCAG	3 cut(s)	378, 948, 1135
BspFNI	CGCG	1 cut(s)	1074
BspLI	GGNNCC	2 cut(s)	328, 919
BspMI	ACCTGC	1 cut(s)	567
BspOI	GCTAGC	1 cut(s)	1232
BspPI	GGATC	2 cut(s)	413, 596
BspT104I	TTCGAA	1 cut(s)	1066
BsrDI	GCAATG	2 cut(s)	295, 1165
BsrI	ACTGG	3 cut(s)	24, 511, 617
BssECI	CCNNGG	3 cut(s)	208, 246, 1046
BssMI	GATC	5 cut(s)	418, 424, 601, 774, 1258
BssT1I	CCWWGG	2 cut(s)	208, 1046
Bst4CI	ACNGT	3 cut(s)	270, 1026, 1035
Bst6I	CTCTTC	2 cut(s)	45, 807
BstBI	TTCGAA	1 cut(s)	1066
BstC8I	GCNNGC	1 cut(s)	1230
BstDEI	CTNAG	5 cut(s)	87, 365, 956, 1143, 1191
BstF5I	GGATG	4 cut(s)	8, 114, 1063, 1099
BstFNI	CGCG	1 cut(s)	1074
BstH2I	RGCGCY	2 cut(s)	243, 254
BstHHI	GCGC	2 cut(s)	242, 253
BstKTI	GATC	5 cut(s)	421, 427, 604, 777, 1261
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	5 cut(s)	418, 424, 601, 774, 1258
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 248, 294
BstSCI	CCNGG	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	1024
BstUI	CGCG	1 cut(s)	1074
BstV1I	GCAGC	1 cut(s)	1244
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	2 cut(s)	234, 323
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	4 cut(s)	156, 627, 652, 1118
BtsCI	GGATG	4 cut(s)	8, 114, 1063, 1099
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	3 cut(s)	258, 373, 1024
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	1230
CfoI	GCGC	2 cut(s)	242, 253
Cfr13I	GGNCC	4 cut(s)	155, 326, 1026, 1117
Csp6I	GTAC	4 cut(s)	192, 617, 705, 797
CviAII	CATG	4 cut(s)	175, 682, 1174, 1214
CviQI	GTAC	4 cut(s)	192, 617, 705, 797
DdeI	CTNAG	5 cut(s)	87, 365, 956, 1143, 1191
DpnI	GATC	5 cut(s)	420, 426, 603, 776, 1260
DpnII	GATC	5 cut(s)	418, 424, 601, 774, 1258
Eam1104I	CTCTTC	2 cut(s)	45, 807
EarI	CTCTTC	2 cut(s)	45, 807
Eco130I	CCWWGG	2 cut(s)	208, 1046
Eco47I	GGWCC	2 cut(s)	326, 1026
Eco47III	AGCGCT	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	1117
EcoRI	GAATTC	1 cut(s)	1068
EcoT14I	CCWWGG	2 cut(s)	208, 1046
ErhI	CCWWGG	2 cut(s)	208, 1046
FaeI	CATG	4 cut(s)	178, 685, 1177, 1217
FalI	AAGNNNNNCTT	2 cut(s)	1117, 1149
FaqI	GGGAC	3 cut(s)	312, 707, 934
FatI	CATG	4 cut(s)	174, 681, 1173, 1213
FauNDI	CATATG	1 cut(s)	305
FbaI	TGATCA	2 cut(s)	774, 1258
Fnu4HI	GCNGC	2 cut(s)	1075, 1233
FokI	GGATG	3 cut(s)	101, 1070, 1106
Fsp4HI	GCNGC	2 cut(s)	1075, 1233
FspBI	CTAG	6 cut(s)	107, 606, 806, 836, 980, 1229
GlaI	GCGC	2 cut(s)	241, 252
GluI	GCNGC	2 cut(s)	1075, 1233
GsaI	CCCAGC	2 cut(s)	189, 955
GsuI	CTGGAG	2 cut(s)	60, 256
HaeII	RGCGCY	2 cut(s)	243, 254
HaeIII	GGCC	4 cut(s)	156, 627, 652, 1118
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	2 cut(s)	242, 253
Hin1II	CATG	4 cut(s)	178, 685, 1177, 1217
Hin6I	GCGC	2 cut(s)	240, 251
HinP1I	GCGC	2 cut(s)	240, 251
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	4 cut(s)	310, 478, 547, 1148
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	59, 305
Hpy166II	GTNNAC	4 cut(s)	273, 407, 1022, 1112
Hpy188I	TCNGA	4 cut(s)	31, 718, 1153, 1263
Hpy188III	TCNNGA	5 cut(s)	41, 235, 245, 422, 1104
Hpy8I	GTNNAC	4 cut(s)	273, 407, 1022, 1112
HpyAV	CCTTC	3 cut(s)	38, 340, 1130
HpyCH4III	ACNGT	3 cut(s)	270, 1026, 1035
HpyCH4V	TGCA	4 cut(s)	203, 514, 587, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 248, 294
HpyF3I	CTNAG	5 cut(s)	87, 365, 956, 1143, 1191
Hsp92II	CATG	4 cut(s)	178, 685, 1177, 1217
HspAI	GCGC	2 cut(s)	240, 251
Ksp22I	TGATCA	2 cut(s)	774, 1258
Kzo9I	GATC	5 cut(s)	418, 424, 601, 774, 1258
LmnI	GCTCC	3 cut(s)	237, 247, 917
Lsp1109I	GCAGC	1 cut(s)	1244
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	6 cut(s)	107, 606, 806, 836, 980, 1229
MaeIII	GTNAC	2 cut(s)	724, 1002
MalI	GATC	5 cut(s)	420, 426, 603, 776, 1260
MboI	GATC	5 cut(s)	418, 424, 601, 774, 1258
MboII	GAAGA	5 cut(s)	62, 214, 378, 419, 794
MfeI	CAATTG	2 cut(s)	813, 864
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	1024
MlyI	GAGTC	3 cut(s)	304, 472, 1157
MroXI	GAANNNNTTC	2 cut(s)	36, 893
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	1 cut(s)	955
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	2 cut(s)	813, 864
MvnI	CGCG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	3 cut(s)	162, 248, 294
NciI	CCSGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	5 cut(s)	418, 424, 601, 774, 1258
NheI	GCTAGC	1 cut(s)	1228
NlaIII	CATG	4 cut(s)	178, 685, 1177, 1217
NlaIV	GGNNCC	2 cut(s)	328, 919
NmuCI	GTSAC	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	1066
OliI	CACNNNNGTG	1 cut(s)	866
PdmI	GAANNNNTTC	2 cut(s)	36, 893
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	1076, 1234
PleI	GAGTC	3 cut(s)	304, 472, 1156
PpsI	GAGTC	3 cut(s)	304, 472, 1156
PspFI	CCCAGC	2 cut(s)	185, 951
PspN4I	GGNNCC	2 cut(s)	328, 919
PspPI	GGNCC	4 cut(s)	155, 326, 1026, 1117
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	1 cut(s)	955
RsaI	GTAC	4 cut(s)	193, 618, 706, 798
RsaNI	GTAC	4 cut(s)	192, 617, 705, 797
RseI	CAYNNNNRTG	1 cut(s)	866
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	2 cut(s)	1075, 1233
Sau3AI	GATC	5 cut(s)	418, 424, 601, 774, 1258
Sau96I	GGNCC	4 cut(s)	155, 326, 1026, 1117
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	3 cut(s)	304, 472, 1157
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	1024
SfaNI	GCATC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	1066
SinI	GGWCC	2 cut(s)	326, 1026
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	3 cut(s)	442, 763, 1088
SmoI	CTYRAG	3 cut(s)	442, 763, 1088
SsiI	CCGC	2 cut(s)	276, 1074
SspMI	CTAG	6 cut(s)	107, 606, 806, 836, 980, 1229
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	208, 1046
TaaI	ACNGT	3 cut(s)	270, 1026, 1035
TaqI	TCGA	2 cut(s)	476, 1066
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	1 cut(s)	1077
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	3 cut(s)	265, 373, 1024
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	1 cut(s)	1232
Tsp45I	GTSAC	1 cut(s)	724
TspRI	CASTG	3 cut(s)	265, 373, 1024
VneI	GTGCAC	1 cut(s)	1020
VpaK11BI	GGWCC	2 cut(s)	326, 1026
XapI	RAATTY	3 cut(s)	893, 1068, 1243
XmnI	GAANNNNTTC	2 cut(s)	36, 893
XspI	CTAG	6 cut(s)	107, 606, 806, 836, 980, 1229
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.