Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0017279

Physical Location & Seq

Genomic Coordinates Reverse (-)

541745 .. 543668

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1006600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAAATCTCCCCAATCTTCTCCAAAATCGAAAACCTCTCTTCTTGAAAATGAAAAAGAAGTACAAGAATATCCAATGTTTAGCAACACCAAGATCAAAAGCAAAAAACTAGCATTCATCCCATTAGTTTTCCTCATTTACTTTCAAGTCTCCGGCGGTCCCTATGGCACTGAGTCCACTGTCGGTTCCGGGGGGCCTTTCTTTGCCATCCTTGGCTTTCTCCTCTTCCCCATCATCTGGTGCATTCCTGAGGCCCTTGTCACTGCTGAGCTAGCCACCGCCTTTCCTGGCAATGGCGGCTTTGTCATATGGACTCACCAAGCCTTTGGTCCCTTCTGGGGCTTCCTCATTGGTTTCTGGAAGTTCCTTAGTGCTGTCATTAACCTATCGTCCTACCCAGTTCTCTGCATAGACTACATTGATCCGATGCTACCAACTTTGTCACACTTGCCTCACTATTTTCTCATCTCTCTTTCAACCCTTTTGCTCTCAGTTCTTAACTTCATTGGTCTGCCTACTGTTGGCCATGCTGCAATATCTTTAGGCATTTTATCATACTTGCCATTTGTAGTAATTTCGGTTTTTGCTATTCCCAAAATTGACCCAAGCAAATGGGTTTTTTCTGGCCAGAATAGAAAGAAAAAAAATTGGCCATTGTTTTTTAATTCCTTATTTTGGAACTTAAATTGTTGGGACAATGTTAGTACTTTAGTTCTGGAAGGTGTTAAAAATCCCCCCAAAACATTACCAAAAGCATTTCTCTCAGCTGGGTTGTTGACTTTTTTTACTTCCCTAATACCTCTACTAGCTGCAACTGGTGCCATGTCTCTTGACCTAGATGATTGGGTTGATGGGTATTATACAGTTGTGGCAGAAAAAATCGTAGGGAAAAAGTTCAAAAAATGGGTTAGGGCTGGAGCCTTTTTGTCTAGCATTGGTGTCTACCAGTCCCAATTGAGCAGTTGCTCACACCAGCTTTTAGGCATGGCAGAATTAGGGTTGTTGCCTAGACTTTTCGGGGCACGGTCAAAATGGTTCAACACTCCTTGGGTGGGAATTTTGATATCAGCAGTGATATCAAACTTGGTTTCTTACATGAAGTTTAGGCATGTCACATCTTTAGTGAATGTTTTGTTCAGTTTGAGCATGCTAGTCGAATTTTCGGCTTTTCTTTGGTTGAGGGTGAAGATTCCGGATTTACAGAGGCCCTTCAAAGTTCCAGTTACAAGGCTGAGAGGGTTAATAGCAATCTTATTTATTCCGTTTGGAATTTTGGTGTATGTAACTTGTGTTGGCACAAAAGTTGTGTACCTGGTGATTGCTGTGCTGACTGTGTTTGGGATTATTTGGTACCACTGCATGAAGATTTTCCAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

460

Amino Acids

51.16

Weight (kDa)

9.56

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	50 - 438	2e-34	Amino acid permease
AA_permease	PF00324	56 - 444	1.2e-16	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45290
malus_domestica	MD03G1006600.v1.1 MD11G1009700.v1.1
prunus_persica	Prupe.6G006300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082961
rosa_laevigata	RLG00000037005
rosa_multiflora	Rmu_sc0017035.1_g000001
rosa_rugosa	Rorug05G0481700
rosa_samantha	Rh5AG531300 Rh5BG558300 Rh5CG581200 Rh5DG567100
rosa_wichuraiana	Rw5G049730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1350
AccB1I	GGYRCC	2 cut(s)	818, 1350
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	942
AccIII	TCCGGA	1 cut(s)	1192
AciI	CCGC	3 cut(s)	156, 279, 297
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	3 cut(s)	523, 625, 650
AcsI	RAATTY	3 cut(s)	1056, 1157, 1269
AfaI	GTAC	4 cut(s)	63, 706, 1310, 1352
AfiI	CCNNNNNNNGG	6 cut(s)	237, 293, 338, 521, 675, 1052
AgsI	TTSAA	6 cut(s)	47, 146, 477, 898, 1039, 1213
AjnI	CCWGG	3 cut(s)	286, 1311, 1371
AluBI	AGCT	4 cut(s)	271, 767, 809, 976
AluI	AGCT	4 cut(s)	271, 767, 809, 976
Alw26I	GTCTC	2 cut(s)	154, 831
AlwI	GGATC	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	1192
AoxI	GGCC	6 cut(s)	194, 252, 523, 625, 650, 1205
ApeKI	GCWGC	2 cut(s)	530, 809
ApoI	RAATTY	3 cut(s)	1056, 1157, 1269
Asp700I	GAANNNNTTC	2 cut(s)	893, 1367
Asp718I	GGTACC	1 cut(s)	1350
AspS9I	GGNCC	5 cut(s)	158, 194, 253, 329, 1206
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	3 cut(s)	308, 1195, 1327
AsuNHI	GCTAGC	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	158, 329
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	1024
BalI	TGGCCA	3 cut(s)	525, 627, 652
BanI	GGYRCC	2 cut(s)	818, 1350
BbvI	GCAGC	2 cut(s)	517, 796
BccI	CCATC	3 cut(s)	215, 239, 845
BcgI	CGANNNNNNTGC	2 cut(s)	1135, 1169
BciT130I	CCWGG	3 cut(s)	288, 1313, 1373
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	154, 831
BfaI	CTAG	7 cut(s)	110, 272, 806, 836, 930, 1008, 1151
BisI	GCNGC	3 cut(s)	298, 531, 810
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	3 cut(s)	299, 532, 811
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	4 cut(s)	190, 288, 1313, 1373
Bme18I	GGWCC	2 cut(s)	158, 329
BmgT120I	GGNCC	5 cut(s)	158, 194, 253, 329, 1206
BmiI	GGNNCC	7 cut(s)	160, 187, 195, 331, 820, 919, 1352
BmrFI	CCNGG	4 cut(s)	190, 288, 1313, 1373
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	1 cut(s)	417
BmtI	GCTAGC	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	936
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	190
BsaJI	CCNNGG	3 cut(s)	189, 211, 1046
BsaWI	WCCGGW	1 cut(s)	1192
Bsc4I	CCNNNNNNNGG	6 cut(s)	237, 293, 338, 521, 675, 1052
Bse1I	ACTGG	4 cut(s)	398, 820, 946, 1220
Bse21I	CCTNAGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	298
BseAI	TCCGGA	1 cut(s)	1192
BseBI	CCWGG	3 cut(s)	288, 1313, 1373
BseDI	CCNNGG	3 cut(s)	189, 211, 1046
BseGI	GGATG	2 cut(s)	117, 207
BseLI	CCNNNNNNNGG	6 cut(s)	237, 293, 338, 521, 675, 1052
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	6 cut(s)	162, 240, 258, 504, 777, 1223
BseNI	ACTGG	4 cut(s)	398, 820, 946, 1220
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	2 cut(s)	517, 796
BseYI	CCCAGC	1 cut(s)	767
BshFI	GGCC	6 cut(s)	196, 254, 525, 627, 652, 1207
BshNI	GGYRCC	2 cut(s)	818, 1350
BsiSI	CCGG	3 cut(s)	153, 189, 1193
BslFI	GGGAC	4 cut(s)	144, 315, 707, 934
BslI	CCNNNNNNNGG	6 cut(s)	237, 293, 338, 521, 675, 1052
BsmAI	GTCTC	2 cut(s)	154, 831
BsmFI	GGGAC	4 cut(s)	144, 315, 707, 934
BsmI	GAATGC	2 cut(s)	113, 243
BsnI	GGCC	6 cut(s)	196, 254, 525, 627, 652, 1207
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp13I	TCCGGA	1 cut(s)	1192
Bsp143I	GATC	2 cut(s)	93, 421
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	3 cut(s)	156, 279, 297
BspANI	GGCC	6 cut(s)	196, 254, 525, 627, 652, 1207
BspCNI	CTCAG	6 cut(s)	163, 241, 259, 503, 776, 1224
BspEI	TCCGGA	1 cut(s)	1192
BspLI	GGNNCC	7 cut(s)	160, 187, 195, 331, 820, 919, 1352
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	416
BspT107I	GGYRCC	2 cut(s)	818, 1350
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	4 cut(s)	398, 820, 946, 1220
BssECI	CCNNGG	3 cut(s)	189, 211, 1046
BssMI	GATC	2 cut(s)	93, 421
BssT1I	CCWWGG	2 cut(s)	211, 1046
Bst2UI	CCWGG	3 cut(s)	288, 1313, 1373
Bst4CI	ACNGT	5 cut(s)	181, 520, 865, 1026, 1333
Bst6I	CTCTTC	2 cut(s)	45, 230
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstC8I	GCNNGC	2 cut(s)	273, 1148
BstDEI	CTNAG	8 cut(s)	171, 249, 267, 368, 490, 763, 1232, 1377
BstF5I	GGATG	2 cut(s)	117, 207
BstKTI	GATC	2 cut(s)	96, 424
BstMAI	GTCTC	2 cut(s)	154, 831
BstMBI	GATC	2 cut(s)	93, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 297, 818
BstNI	CCWGG	3 cut(s)	288, 1313, 1373
BstNSI	RCATGY	2 cut(s)	1112, 1150
BstSCI	CCNGG	4 cut(s)	188, 286, 1311, 1371
BstSLI	GKGCMC	1 cut(s)	1024
BstV1I	GCAGC	2 cut(s)	517, 796
BstXI	CCANNNNNNTGG	2 cut(s)	326, 612
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	6 cut(s)	196, 254, 525, 627, 652, 1207
BtsCI	GGATG	2 cut(s)	117, 207
BtsI	GCAGTG	3 cut(s)	261, 1077, 1354
BtsIMutI	CAGTG	5 cut(s)	168, 177, 261, 1077, 1354
Cac8I	GCNNGC	2 cut(s)	273, 1148
Cfr13I	GGNCC	5 cut(s)	158, 194, 253, 329, 1206
CsiI	ACCWGGT	1 cut(s)	1311
Csp6I	GTAC	4 cut(s)	62, 705, 1309, 1351
CviAII	CATG	7 cut(s)	527, 823, 985, 1096, 1109, 1147, 1360
CviQI	GTAC	4 cut(s)	62, 705, 1309, 1351
DdeI	CTNAG	8 cut(s)	171, 249, 267, 368, 490, 763, 1232, 1377
DpnI	GATC	2 cut(s)	95, 423
DpnII	GATC	2 cut(s)	93, 421
EaeI	YGGCCR	3 cut(s)	523, 625, 650
Eam1104I	CTCTTC	2 cut(s)	45, 230
EarI	CTCTTC	2 cut(s)	45, 230
Eco130I	CCWWGG	2 cut(s)	211, 1046
Eco32I	GATATC	2 cut(s)	1065, 1077
Eco47I	GGWCC	2 cut(s)	158, 329
Eco81I	CCTNAGG	1 cut(s)	249
EcoO109I	RGGNCCY	3 cut(s)	194, 253, 1206
EcoRII	CCWGG	3 cut(s)	286, 1311, 1371
EcoRV	GATATC	2 cut(s)	1065, 1077
EcoT14I	CCWWGG	2 cut(s)	211, 1046
ErhI	CCWWGG	2 cut(s)	211, 1046
FaeI	CATG	7 cut(s)	530, 826, 988, 1099, 1112, 1150, 1363
FaqI	GGGAC	4 cut(s)	144, 315, 707, 934
FatI	CATG	7 cut(s)	526, 822, 984, 1095, 1108, 1146, 1359
FauNDI	CATATG	1 cut(s)	308
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	3 cut(s)	298, 531, 810
FokI	GGATG	2 cut(s)	104, 194
Fsp4HI	GCNGC	3 cut(s)	298, 531, 810
FspBI	CTAG	7 cut(s)	110, 272, 806, 836, 930, 1008, 1151
GluI	GCNGC	3 cut(s)	298, 531, 810
GsaI	CCCAGC	1 cut(s)	771
GsuI	CTGGAG	1 cut(s)	936
HaeIII	GGCC	6 cut(s)	196, 254, 525, 627, 652, 1207
HapII	CCGG	3 cut(s)	153, 189, 1193
Hin1II	CATG	7 cut(s)	530, 826, 988, 1099, 1112, 1150, 1363
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	3 cut(s)	173, 313, 1189
HpaII	CCGG	3 cut(s)	153, 189, 1193
HphI	GGTGA	3 cut(s)	308, 1195, 1327
Hpy166II	GTNNAC	4 cut(s)	177, 777, 943, 1309
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	6 cut(s)	44, 248, 358, 716, 830, 1193
Hpy8I	GTNNAC	4 cut(s)	177, 777, 943, 1309
HpyAV	CCTTC	3 cut(s)	343, 713, 1219
HpyCH4III	ACNGT	5 cut(s)	181, 520, 865, 1026, 1333
HpyCH4V	TGCA	5 cut(s)	243, 408, 533, 812, 1359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 297, 818
HpyF3I	CTNAG	8 cut(s)	171, 249, 267, 368, 490, 763, 1232, 1377
Hsp92II	CATG	7 cut(s)	530, 826, 988, 1099, 1112, 1150, 1363
Kpn2I	TCCGGA	1 cut(s)	1192
KpnI	GGTACC	1 cut(s)	1354
Kzo9I	GATC	2 cut(s)	93, 421
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	2 cut(s)	517, 796
LweI	GCATC	1 cut(s)	417
MabI	ACCWGGT	1 cut(s)	1311
MaeI	CTAG	7 cut(s)	110, 272, 806, 836, 930, 1008, 1151
MaeIII	GTNAC	5 cut(s)	259, 441, 1111, 1222, 1282
MalI	GATC	2 cut(s)	95, 423
MboI	GATC	2 cut(s)	93, 421
MboII	GAAGA	5 cut(s)	9, 32, 217, 1198, 1375
MfeI	CAATTG	1 cut(s)	953
MhlI	GDGCHC	1 cut(s)	1024
MlsI	TGGCCA	3 cut(s)	525, 627, 652
MluNI	TGGCCA	3 cut(s)	525, 627, 652
MlyI	GAGTC	2 cut(s)	182, 307
Mox20I	TGGCCA	3 cut(s)	525, 627, 652
MroI	TCCGGA	1 cut(s)	1192
MroXI	GAANNNNTTC	2 cut(s)	893, 1367
MscI	TGGCCA	3 cut(s)	525, 627, 652
MseI	TTAA	6 cut(s)	381, 498, 663, 683, 726, 1241
Msp20I	TGGCCA	3 cut(s)	525, 627, 652
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	3 cut(s)	153, 189, 1193
MspR9I	CCNGG	4 cut(s)	190, 288, 1313, 1373
MunI	CAATTG	1 cut(s)	953
Mva1269I	GAATGC	2 cut(s)	113, 243
MvaI	CCWGG	3 cut(s)	288, 1313, 1373
MwoI	GCNNNNNNNGC	3 cut(s)	272, 297, 818
NciI	CCSGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	2 cut(s)	93, 421
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	7 cut(s)	530, 826, 988, 1099, 1112, 1150, 1363
NlaIV	GGNNCC	7 cut(s)	160, 187, 195, 331, 820, 919, 1352
NmuCI	GTSAC	3 cut(s)	259, 441, 1111
NspI	RCATGY	2 cut(s)	1112, 1150
PaeI	GCATGC	1 cut(s)	1150
PctI	GAATGC	2 cut(s)	113, 243
PdmI	GAANNNNTTC	2 cut(s)	893, 1367
PfeI	GAWTC	1 cut(s)	1189
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	299, 532, 811
PleI	GAGTC	2 cut(s)	181, 307
PpsI	GAGTC	2 cut(s)	181, 307
Psp6I	CCWGG	3 cut(s)	286, 1311, 1371
PspFI	CCCAGC	1 cut(s)	767
PspGI	CCWGG	3 cut(s)	286, 1311, 1371
PspN4I	GGNNCC	7 cut(s)	160, 187, 195, 331, 820, 919, 1352
PspPI	GGNCC	5 cut(s)	158, 194, 253, 329, 1206
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	4 cut(s)	63, 706, 1310, 1352
RsaNI	GTAC	4 cut(s)	62, 705, 1309, 1351
SaqAI	TTAA	6 cut(s)	381, 498, 663, 683, 726, 1241
SatI	GCNGC	3 cut(s)	298, 531, 810
Sau3AI	GATC	2 cut(s)	93, 421
Sau96I	GGNCC	5 cut(s)	158, 194, 253, 329, 1206
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	2 cut(s)	182, 307
ScrFI	CCNGG	4 cut(s)	190, 288, 1313, 1373
SduI	GDGCHC	1 cut(s)	1024
SexAI	ACCWGGT	1 cut(s)	1311
SfaNI	GCATC	1 cut(s)	417
SinI	GGWCC	2 cut(s)	158, 329
SphI	GCATGC	1 cut(s)	1150
SsiI	CCGC	3 cut(s)	156, 279, 297
SspMI	CTAG	7 cut(s)	110, 272, 806, 836, 930, 1008, 1151
StyD4I	CCNGG	4 cut(s)	188, 286, 1311, 1371
StyI	CCWWGG	2 cut(s)	211, 1046
TaaI	ACNGT	5 cut(s)	181, 520, 865, 1026, 1333
TaqI	TCGA	2 cut(s)	29, 1155
TatI	WGTACW	2 cut(s)	61, 704
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	1189
Tru1I	TTAA	6 cut(s)	381, 498, 663, 683, 726, 1241
Tru9I	TTAA	6 cut(s)	381, 498, 663, 683, 726, 1241
TscAI	CASTG	5 cut(s)	175, 184, 268, 1077, 1361
TseFI	GTSAC	3 cut(s)	259, 441, 1111
TseI	GCWGC	2 cut(s)	530, 809
Tsp45I	GTSAC	3 cut(s)	259, 441, 1111
TspDTI	ATGAA	6 cut(s)	17, 66, 106, 493, 1112, 1376
TspGWI	ACGGA	1 cut(s)	1251
TspRI	CASTG	5 cut(s)	175, 184, 268, 1077, 1361
Van91I	CCANNNNNTGG	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	158, 329
XapI	RAATTY	3 cut(s)	1056, 1157, 1269
XceI	RCATGY	2 cut(s)	1112, 1150
XmiI	GTMKAC	1 cut(s)	942
XmnI	GAANNNNTTC	2 cut(s)	893, 1367
XspI	CTAG	7 cut(s)	110, 272, 806, 836, 930, 1008, 1151
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.