MD11G1009700.v1.1

polyamine transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
769877 .. 771790
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1009700.v1.1.491

Sequence Viewer

Length: 1470 bp
ATGAAATCCCCCCAATCTTCTCCGAAATCGAAAACCGCTCTTCTCGATAATGAAAAGGAGGAAGTACAAGAACCTCCAATGTTTAGCACCACCAAGAACAAATGCCAAAAACTAGCATTCATCCCACTAGTTTTCCTCATTTACTTTCAAATCTCCGGCGGCCCCTATAACACTGAGTCCACTGTAGGTTCCGGGGGGCCTTTCAATGCCATCCTTGGCTTTCTCCTCTTCCCCATCATCTGGAGCATCCCTGAGGCCCTTGTCACTGCTGAGCTAGCCAGCACCTTTCGTGGCAATGGCGGCTTTGTTATATGGACTCACCAAGCCTTTGGTCCATTTTGGGGCTTCCTCATTGGTTTCTGGAAGTTCTTTAGTGCTGTCATTAACTTATCTTCCTACCCAGGTCTCTGCATAGATTACATTGATCCAATGCTACCAACTTTGTTGTCACACTTGCCTCACTATTTACTCATCTCTCTTTCAACCCTCTTACTCTCAGTTTTTAACTTCATTGGTCTGCCTACAGTTGGCTATGCCGCAATATCTTTAGGGATTTTATCATACTTGCCATTTATAGTAATTTCTGTTTGTGCAATTCCCCAAATTGACCCTAGCAAATGGGTTTCTTCTGGCCAGATTAGCAGAAAAAGAAATTGGCCATCGTTTTTTAATTCGTTATTTTGGAACTTAAATTGTTGGGACAATGTTAGTACTTTAGTTGGGGAAGGTGTTAAAAACCCCCCCAAAACATTACCAAAAGCATTTCTCGCAGCTGGGTTGTTGACTTATTTGACTTCCCTAATACCTCTACTAGCTGCAATTGGTGCCATGTCTCTTGACCTAGATGATTGGAATGATGGGTTTTACACAGTTGTGGCATATAAAATTGTGGGGAAAAGGTTCGCAAAATGGGTTAGGGTTGGAGCCTTTTTGTCTGGCATTGGTGTCTATCAGTCCCAATTGAGCAGTTGTTCACACCAGCTTTTAGGCATGGCTGAATTAGGGTTGTTGCCTGGACTTTTTGGGGCGCGGTCAAAATTGTCCGGCACTCCTTGGGTGGGAATTTTGATATCAGCAGTGATATCAATCTTGGTTTCATACATGAATTTTAAGCATGTCACATCTTTAGTGAATGTCTTGTTCAGTTTGAGCATGCTAGTCGAATTTTCGGCTTTTATATGGTTGAGGGTGAAGCTTCCGGATTTACAGAGGCCCTTCAAACTTCCAGTTACAAGGCTGAGAGGGCTGATAGCAGTGCTCTTTATTCCGTTTGGAATTTTGGTGTATATAACTTGTGTTGGCACAAAAGTTGTGTACTTGGTGATTGCTTTGCTGACCGTGTTTGGGATCATTTCGTACTTCTCCATGAAGATTTTCCAGGCTAAGATGTGGCTTGGCTTCAACCATGTTGTGGCAAAACTAGCAGATTATGAAGATTTGGGCTACTATGGCCAATTTATGAAGAAGTGA

Protein Analysis

490

Amino Acids

54.14

Weight (kDa)

9.34

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 44 - 442 1.2e-30 Amino acid permease
AA_permease PF00324 59 - 450 1.5e-16 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017279)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45290
malus_domestica MD03G1006600.v1.1 MD11G1009700.v1.1
prunus_persica Prupe.6G006300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0082961
rosa_laevigata RLG00000037005
rosa_multiflora Rmu_sc0017035.1_g000001
rosa_rugosa Rorug05G0481700
rosa_samantha Rh5AG531300 Rh5BG558300 Rh5CG581200 Rh5DG567100
rosa_wichuraiana Rw5G049730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 824
AccB7I CCANNNNNTGG 2 cut(s) 240, 1411
AccBSI CCGCTC 1 cut(s) 38
AccII CGCG 1 cut(s) 1030
AccIII TCCGGA 1 cut(s) 1198
AciI CCGC 5 cut(s) 36, 159, 300, 537, 1030
AclWI GGATC 2 cut(s) 419, 1355
AcoI YGGCCR 3 cut(s) 631, 656, 1450
AcsI RAATTY 4 cut(s) 1062, 1105, 1163, 1275
AfaI GTAC 4 cut(s) 66, 712, 1316, 1358
AfiI CCNNNNNNNGG 6 cut(s) 240, 341, 527, 1058, 1344, 1411
AgsI TTSAA 5 cut(s) 149, 205, 483, 1219, 1402
AhlI ACTAGT 1 cut(s) 127
AjnI CCWGG 3 cut(s) 400, 1012, 1377
AjuI GAANNNNNNNTTGG 2 cut(s) 637, 669
AleI CACNNNNGTG 1 cut(s) 872
AluBI AGCT 5 cut(s) 274, 773, 815, 982, 1195
AluI AGCT 5 cut(s) 274, 773, 815, 982, 1195
Alw21I GWGCWC 1 cut(s) 1260
Alw26I GTCTC 2 cut(s) 410, 837
AlwI GGATC 2 cut(s) 419, 1355
Aor13HI TCCGGA 1 cut(s) 1198
AoxI GGCC 7 cut(s) 160, 197, 255, 631, 656, 1211, 1450
ApeKI GCWGC 2 cut(s) 770, 815
ApoI RAATTY 4 cut(s) 1062, 1105, 1163, 1275
Asp700I GAANNNNTTC 2 cut(s) 899, 1373
AspLEI GCGC 1 cut(s) 1030
AspS9I GGNCC 5 cut(s) 161, 197, 256, 332, 1212
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 3 cut(s) 311, 1201, 1333
AsuNHI GCTAGC 1 cut(s) 274
AvaII GGWCC 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 252
BalI TGGCCA 3 cut(s) 633, 658, 1452
BanI GGYRCC 1 cut(s) 824
Bbv12I GWGCWC 1 cut(s) 1260
BbvI GCAGC 2 cut(s) 782, 802
BccI CCATC 4 cut(s) 218, 242, 667, 851
BcgI CGANNNNNNTGC 2 cut(s) 1141, 1175
BciT130I CCWGG 3 cut(s) 402, 1014, 1379
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 410, 837
BcuI ACTAGT 1 cut(s) 127
BfaI CTAG 8 cut(s) 113, 128, 275, 612, 812, 842, 1157, 1421
BfmI CTRYAG 2 cut(s) 183, 522
BisI GCNGC 5 cut(s) 160, 301, 537, 771, 816
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 5 cut(s) 161, 302, 538, 772, 817
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 4 cut(s) 193, 402, 1014, 1379
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 5 cut(s) 161, 197, 256, 332, 1212
BmiI GGNNCC 5 cut(s) 163, 190, 198, 826, 925
BmrFI CCNGG 4 cut(s) 193, 402, 1014, 1379
BmsI GCATC 1 cut(s) 255
BmtI GCTAGC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 262
Bpu1102I GCTNAGC 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 1085
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 4 cut(s) 192, 214, 400, 1052
BsaWI WCCGGW 1 cut(s) 1198
Bsc4I CCNNNNNNNGG 6 cut(s) 240, 341, 527, 1058, 1344, 1411
Bse1I ACTGG 1 cut(s) 1226
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 1085
BseAI TCCGGA 1 cut(s) 1198
BseBI CCWGG 3 cut(s) 402, 1014, 1379
BseDI CCNNGG 4 cut(s) 192, 214, 400, 1052
BseGI GGATG 3 cut(s) 120, 210, 246
BseJI GATNNNNATC 1 cut(s) 1085
BseLI CCNNNNNNNGG 6 cut(s) 240, 341, 527, 1058, 1344, 1411
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 5 cut(s) 165, 243, 261, 510, 1229
BseNI ACTGG 1 cut(s) 1226
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 782, 802
BseYI CCCAGC 1 cut(s) 773
Bsh1236I CGCG 1 cut(s) 1030
BshFI GGCC 7 cut(s) 162, 199, 257, 633, 658, 1213, 1452
BshNI GGYRCC 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 1260
BsiSI CCGG 4 cut(s) 156, 192, 1044, 1199
BslFI GGGAC 2 cut(s) 713, 940
BslI CCNNNNNNNGG 6 cut(s) 240, 341, 527, 1058, 1344, 1411
BsmAI GTCTC 2 cut(s) 410, 837
BsmFI GGGAC 2 cut(s) 713, 940
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 7 cut(s) 162, 199, 257, 633, 658, 1213, 1452
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 1260
Bsp13I TCCGGA 1 cut(s) 1198
Bsp143I GATC 2 cut(s) 424, 1347
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 5 cut(s) 36, 159, 300, 537, 1030
BspANI GGCC 7 cut(s) 162, 199, 257, 633, 658, 1213, 1452
BspCNI CTCAG 5 cut(s) 166, 244, 262, 509, 1230
BspEI TCCGGA 1 cut(s) 1198
BspFNI CGCG 1 cut(s) 1030
BspLI GGNNCC 5 cut(s) 163, 190, 198, 826, 925
BspOI GCTAGC 1 cut(s) 278
BspPI GGATC 2 cut(s) 419, 1355
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 824
BspTNI GGTCTC 1 cut(s) 410
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 1 cut(s) 1226
BssECI CCNNGG 4 cut(s) 192, 214, 400, 1052
BssMI GATC 2 cut(s) 424, 1347
BssT1I CCWWGG 2 cut(s) 214, 1052
Bst2UI CCWGG 3 cut(s) 402, 1014, 1379
Bst4CI ACNGT 4 cut(s) 184, 526, 871, 1339
Bst6I CTCTTC 2 cut(s) 45, 233
BstAPI GCANNNNNTGC 1 cut(s) 824
BstC8I GCNNGC 3 cut(s) 276, 280, 1154
BstDEI CTNAG 6 cut(s) 174, 252, 270, 496, 1238, 1383
BstF5I GGATG 3 cut(s) 120, 210, 246
BstFNI CGCG 1 cut(s) 1030
BstHHI GCGC 1 cut(s) 1030
BstKTI GATC 2 cut(s) 427, 1350
BstMAI GTCTC 2 cut(s) 410, 837
BstMBI GATC 2 cut(s) 424, 1347
BstMWI GCNNNNNNNGC 8 cut(s) 275, 300, 639, 767, 824, 1243, 1421, 1449
BstNI CCWGG 3 cut(s) 402, 1014, 1379
BstNSI RCATGY 2 cut(s) 1118, 1156
BstSCI CCNGG 4 cut(s) 191, 400, 1012, 1377
BstSFI CTRYAG 2 cut(s) 183, 522
BstUI CGCG 1 cut(s) 1030
BstV1I GCAGC 2 cut(s) 782, 802
BstXI CCANNNNNNTGG 1 cut(s) 329
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 7 cut(s) 162, 199, 257, 633, 658, 1213, 1452
BtsCI GGATG 3 cut(s) 120, 210, 246
BtsI GCAGTG 3 cut(s) 264, 1083, 1260
BtsIMutI CAGTG 5 cut(s) 171, 180, 264, 1083, 1260
Cac8I GCNNGC 3 cut(s) 276, 280, 1154
CfoI GCGC 1 cut(s) 1030
Cfr13I GGNCC 5 cut(s) 161, 197, 256, 332, 1212
Csp6I GTAC 4 cut(s) 65, 711, 1315, 1357
CviAII CATG 7 cut(s) 829, 991, 1102, 1115, 1153, 1366, 1406
CviQI GTAC 4 cut(s) 65, 711, 1315, 1357
DdeI CTNAG 6 cut(s) 174, 252, 270, 496, 1238, 1383
DpnI GATC 2 cut(s) 426, 1349
DpnII GATC 2 cut(s) 424, 1347
EaeI YGGCCR 3 cut(s) 631, 656, 1450
Eam1104I CTCTTC 2 cut(s) 45, 233
EarI CTCTTC 2 cut(s) 45, 233
Eco130I CCWWGG 2 cut(s) 214, 1052
Eco31I GGTCTC 1 cut(s) 410
Eco32I GATATC 2 cut(s) 1071, 1083
Eco47I GGWCC 1 cut(s) 332
Eco81I CCTNAGG 1 cut(s) 252
EcoO109I RGGNCCY 3 cut(s) 197, 256, 1212
EcoRII CCWGG 3 cut(s) 400, 1012, 1377
EcoRV GATATC 2 cut(s) 1071, 1083
EcoT14I CCWWGG 2 cut(s) 214, 1052
ErhI CCWWGG 2 cut(s) 214, 1052
FaeI CATG 7 cut(s) 832, 994, 1105, 1118, 1156, 1369, 1409
FaqI GGGAC 2 cut(s) 713, 940
FatI CATG 7 cut(s) 828, 990, 1101, 1114, 1152, 1365, 1405
Fnu4HI GCNGC 5 cut(s) 160, 301, 537, 771, 816
FokI GGATG 3 cut(s) 107, 197, 233
Fsp4HI GCNGC 5 cut(s) 160, 301, 537, 771, 816
FspBI CTAG 8 cut(s) 113, 128, 275, 612, 812, 842, 1157, 1421
GlaI GCGC 1 cut(s) 1029
GluI GCNGC 5 cut(s) 160, 301, 537, 771, 816
GsaI CCCAGC 1 cut(s) 777
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 7 cut(s) 162, 199, 257, 633, 658, 1213, 1452
HapII CCGG 4 cut(s) 156, 192, 1044, 1199
HhaI GCGC 1 cut(s) 1030
Hin1II CATG 7 cut(s) 832, 994, 1105, 1118, 1156, 1369, 1409
Hin6I GCGC 1 cut(s) 1028
HinP1I GCGC 1 cut(s) 1028
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HindIII AAGCTT 1 cut(s) 1193
HinfI GANTC 2 cut(s) 176, 316
HpaII CCGG 4 cut(s) 156, 192, 1044, 1199
HphI GGTGA 3 cut(s) 311, 1201, 1333
Hpy166II GTNNAC 4 cut(s) 180, 783, 974, 1315
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 5 cut(s) 44, 241, 361, 836, 1199
Hpy8I GTNNAC 4 cut(s) 180, 783, 974, 1315
HpyAV CCTTC 2 cut(s) 719, 1225
HpyCH4III ACNGT 4 cut(s) 184, 526, 871, 1339
HpyCH4V TGCA 3 cut(s) 411, 593, 818
HpyF10VI GCNNNNNNNGC 8 cut(s) 275, 300, 639, 767, 824, 1243, 1421, 1449
HpyF3I CTNAG 6 cut(s) 174, 252, 270, 496, 1238, 1383
Hsp92II CATG 7 cut(s) 832, 994, 1105, 1118, 1156, 1369, 1409
HspAI GCGC 1 cut(s) 1028
Kpn2I TCCGGA 1 cut(s) 1198
Kzo9I GATC 2 cut(s) 424, 1347
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 243, 923
Lsp1109I GCAGC 2 cut(s) 782, 802
LweI GCATC 1 cut(s) 255
MaeI CTAG 8 cut(s) 113, 128, 275, 612, 812, 842, 1157, 1421
MaeIII GTNAC 4 cut(s) 262, 447, 1117, 1228
MalI GATC 2 cut(s) 426, 1349
MbiI CCGCTC 1 cut(s) 38
MboI GATC 2 cut(s) 424, 1347
MboII GAAGA 7 cut(s) 9, 32, 220, 384, 618, 1381, 1445
MfeI CAATTG 2 cut(s) 819, 959
MhlI GDGCHC 1 cut(s) 1260
MlsI TGGCCA 3 cut(s) 633, 658, 1452
MluNI TGGCCA 3 cut(s) 633, 658, 1452
MlyI GAGTC 2 cut(s) 185, 310
MmeI TCCRAC 1 cut(s) 901
Mox20I TGGCCA 3 cut(s) 633, 658, 1452
MroI TCCGGA 1 cut(s) 1198
MroXI GAANNNNTTC 2 cut(s) 899, 1373
MscI TGGCCA 3 cut(s) 633, 658, 1452
MseI TTAA 6 cut(s) 384, 504, 669, 689, 732, 1110
MslI CAYNNNNRTG 1 cut(s) 872
Msp20I TGGCCA 3 cut(s) 633, 658, 1452
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 4 cut(s) 156, 192, 1044, 1199
MspR9I CCNGG 4 cut(s) 193, 402, 1014, 1379
MunI CAATTG 2 cut(s) 819, 959
Mva1269I GAATGC 1 cut(s) 116
MvaI CCWGG 3 cut(s) 402, 1014, 1379
MvnI CGCG 1 cut(s) 1030
MwoI GCNNNNNNNGC 8 cut(s) 275, 300, 639, 767, 824, 1243, 1421, 1449
NciI CCSGG 1 cut(s) 193
NdeII GATC 2 cut(s) 424, 1347
NheI GCTAGC 1 cut(s) 274
NlaIII CATG 7 cut(s) 832, 994, 1105, 1118, 1156, 1369, 1409
NlaIV GGNNCC 5 cut(s) 163, 190, 198, 826, 925
NmuCI GTSAC 3 cut(s) 262, 447, 1117
NspI RCATGY 2 cut(s) 1118, 1156
OliI CACNNNNGTG 1 cut(s) 872
PaeI GCATGC 1 cut(s) 1156
PciSI GCTCTTC 1 cut(s) 45
PctI GAATGC 1 cut(s) 116
PdmI GAANNNNTTC 2 cut(s) 899, 1373
PflMI CCANNNNNTGG 2 cut(s) 240, 1411
PkrI GCNGC 5 cut(s) 161, 302, 538, 772, 817
PleI GAGTC 2 cut(s) 184, 310
PpsI GAGTC 2 cut(s) 184, 310
Psp6I CCWGG 3 cut(s) 400, 1012, 1377
PspFI CCCAGC 1 cut(s) 773
PspGI CCWGG 3 cut(s) 400, 1012, 1377
PspN4I GGNNCC 5 cut(s) 163, 190, 198, 826, 925
PspPI GGNCC 5 cut(s) 161, 197, 256, 332, 1212
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 4 cut(s) 66, 712, 1316, 1358
RsaNI GTAC 4 cut(s) 65, 711, 1315, 1357
RseI CAYNNNNRTG 1 cut(s) 872
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 6 cut(s) 384, 504, 669, 689, 732, 1110
SatI GCNGC 5 cut(s) 160, 301, 537, 771, 816
Sau3AI GATC 2 cut(s) 424, 1347
Sau96I GGNCC 5 cut(s) 161, 197, 256, 332, 1212
ScaI AGTACT 1 cut(s) 712
SchI GAGTC 2 cut(s) 185, 310
ScrFI CCNGG 4 cut(s) 193, 402, 1014, 1379
SduI GDGCHC 1 cut(s) 1260
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 2 cut(s) 183, 522
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 872
SpeI ACTAGT 1 cut(s) 127
SphI GCATGC 1 cut(s) 1156
SsiI CCGC 5 cut(s) 36, 159, 300, 537, 1030
SspMI CTAG 8 cut(s) 113, 128, 275, 612, 812, 842, 1157, 1421
StyD4I CCNGG 4 cut(s) 191, 400, 1012, 1377
StyI CCWWGG 2 cut(s) 214, 1052
TaaI ACNGT 4 cut(s) 184, 526, 871, 1339
TaqI TCGA 3 cut(s) 29, 45, 1161
TatI WGTACW 3 cut(s) 64, 710, 1314
TauI GCSGC 3 cut(s) 162, 303, 539
Tru1I TTAA 6 cut(s) 384, 504, 669, 689, 732, 1110
Tru9I TTAA 6 cut(s) 384, 504, 669, 689, 732, 1110
TscAI CASTG 5 cut(s) 178, 187, 271, 1083, 1260
TseFI GTSAC 3 cut(s) 262, 447, 1117
TseI GCWGC 2 cut(s) 770, 815
Tsp45I GTSAC 3 cut(s) 262, 447, 1117
TspDTI ATGAA 8 cut(s) 17, 66, 109, 499, 1086, 1118, 1382, 1446
TspGWI ACGGA 1 cut(s) 1257
TspRI CASTG 5 cut(s) 178, 187, 271, 1083, 1260
Van91I CCANNNNNTGG 2 cut(s) 240, 1411
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 4 cut(s) 1062, 1105, 1163, 1275
XceI RCATGY 2 cut(s) 1118, 1156
XmnI GAANNNNTTC 2 cut(s) 899, 1373
XspI CTAG 8 cut(s) 113, 128, 275, 612, 812, 842, 1157, 1421
ZrmI AGTACT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.