Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017279

Physical Location & Seq

Genomic Coordinates Reverse (-)

547378 .. 549346

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G006300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGAAAGCCGCCAATTCTTCTCCAAATTCAAAAACCGTTCTTCCTGAAAATGAAAAACAAGAAGCGGTACAAGAACCTCCAATGTTTAGCACCACCAAGATCAAAAGCAAAAGGCTGTCATTCATCCCTTTAGTTTTCCTCATTTACTTTCAAGTCTCTGGTGGCCCTTATGGCACAGAGTCCATTGTTGGCTCTGGGGGGCCTTTATTTGCCATCCTTGGCTTTCTACTCTTCCCAGTCATTTGGAGCATCCCTGAGGCCCTTGTCACTGCTGAGCTGGCCACGGCCTTTCCCGGCAATGGTGGCTTTGTCATATGGACTCACCAAGCCTTCGGTCCCTTCTGGGGCTTCCTTGTTGGTTTCTGGAAGTTTCTTAGTGCTGTCATAAACTTATCTTCCTACCCTGTTCTCTGTATAGACTACATTGATCCAATACTGCCAACTTCCTTCTCACCCTTGCCTCACTATTTAGTTATCTCTGTTTCAACCATGTTGCTCTCTGTTCTCAACTTCATTGGTTTGCCTACTGTAGGCTATGCTGCAATATCTTTGGGGGTTTTGTCATACTTGCCATTCTTAGTAATTTCTGTTTTTGCAATTCCCAAGATTGATCCTAGCAAATGGGCTGTTTTGGGCCAGAAGGGTAGGAAAAAAGAATGGCCATTGTTCTTCAATTCCCTGTTTTGGAACTTGAATTGTTGGGACAATGTAAGTACTTTAGTTGTAGAGGGTGTTAAGAAACCCTCCAAGACATTACCAAAAGCATTTCTCTCAGCTGGGTTGTTGACTTGCTTGACTTCTTTGATACCTATGCTGGCTGCAACTGGGGCTATGTCCCTCGACCTAGATGACTGGGTTGATGGGTTTTACACTGTTGTTGGAGAAAAAATTGTGGGGAAAAGGTTCAAAAAATGGGTTAGGATTGGAGCCTTTTTATCTGGCATTGGTGTGTATCAGTCGCAATTGAGCAGCTGTTCATACCAGCTTTCTGGCATGGCTGAATTAGGCTTGTTACCGAAACTTTTCGGTGTGCGGTCCAAACGGTTCAATACACCCTGGTTGGGAATTATGATCCCAACAGTGATATCAGTCCTGGTTTCTTACATGAATTTCAGGCATGTCACATCCTTGGTGAATGTTTTAAACAGTCTGGGCATGCTAGTCGAATTGTCGGCTTTTATTTGGTTGAGGGTGAAGTTTCCAGGTGTGGAGAGGCCCTTTAAAATTCCAATTACCAGGCTGAGGTGGTTGATAGCAGTGTTGTTCATTCCATTTGGGTTTTTGGTGTACGTAATTTGTGTTGGCACAAAAATTATATACTTGGTGATTGCTGTGCTGACTGCGGTTGGGATCATTTGGTACTTCTGCATGAAGATTTTCCAAGCTGCAATGTGGCTTGACTTCAACCATGTTGTGAAAAAGCTAGCAGATTATGAAGACTTTGGGGGCTATTATGAACGAATTCTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

491

Amino Acids

54.51

Weight (kDa)

9.42

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45290
malus_domestica	MD03G1006600.v1.1 MD11G1009700.v1.1
prunus_persica	Prupe.6G006300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082961
rosa_laevigata	RLG00000037005
rosa_multiflora	Rmu_sc0017035.1_g000001
rosa_rugosa	Rorug05G0481700
rosa_samantha	Rh5AG531300 Rh5BG558300 Rh5CG581200 Rh5DG567100
rosa_wichuraiana	Rw5G049730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	9, 65, 1033, 1343
AclWI	GGATC	4 cut(s)	422, 605, 1066, 1358
AcoI	YGGCCR	2 cut(s)	279, 659
AcsI	RAATTY	4 cut(s)	25, 1108, 1224, 1461
AfaI	GTAC	4 cut(s)	69, 715, 1289, 1361
AfiI	CCNNNNNNNGG	6 cut(s)	299, 344, 530, 684, 1061, 1242
AgsI	TTSAA	8 cut(s)	30, 152, 486, 673, 694, 907, 1048, 1405
AjnI	CCWGG	4 cut(s)	1055, 1092, 1201, 1235
AluBI	AGCT	6 cut(s)	277, 776, 972, 985, 1385, 1423
AluI	AGCT	6 cut(s)	277, 776, 972, 985, 1385, 1423
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	4 cut(s)	422, 605, 1066, 1358
AoxI	GGCC	8 cut(s)	163, 200, 258, 279, 285, 634, 659, 1214
ApeKI	GCWGC	4 cut(s)	539, 818, 969, 1385
ApoI	RAATTY	4 cut(s)	25, 1108, 1224, 1461
Asp700I	GAANNNNTTC	4 cut(s)	902, 1022, 1376, 1461
AspS9I	GGNCC	7 cut(s)	164, 200, 259, 335, 634, 1035, 1215
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	5 cut(s)	314, 444, 1144, 1204, 1336
AsuNHI	GCTAGC	1 cut(s)	1423
AvaII	GGWCC	2 cut(s)	335, 1035
AxyI	CCTNAGG	1 cut(s)	255
BalI	TGGCCA	2 cut(s)	281, 661
BbsI	GAAGAC	1 cut(s)	1443
BbvCI	CCTCAGC	1 cut(s)	1241
BbvI	GCAGC	4 cut(s)	526, 805, 981, 1372
BccI	CCATC	2 cut(s)	221, 854
BceAI	ACGGC	1 cut(s)	300
BcgI	CGANNNNNNTGC	2 cut(s)	1144, 1178
BciT130I	CCWGG	4 cut(s)	1057, 1094, 1203, 1237
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	4 cut(s)	615, 845, 1160, 1424
BfmI	CTRYAG	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	9, 540, 819, 970, 1386
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	5 cut(s)	10, 541, 820, 971, 1387
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	5 cut(s)	294, 1057, 1094, 1203, 1237
Bme18I	GGWCC	2 cut(s)	335, 1035
BmgT120I	GGNCC	7 cut(s)	164, 200, 259, 335, 634, 1035, 1215
BmiI	GGNNCC	3 cut(s)	201, 337, 928
BmrFI	CCNGG	5 cut(s)	294, 1057, 1094, 1203, 1237
BmrI	ACTGGG	3 cut(s)	230, 834, 862
BmsI	GCATC	1 cut(s)	258
BmtI	GCTAGC	1 cut(s)	1427
BmuI	ACTGGG	3 cut(s)	230, 834, 862
BpiI	GAAGAC	1 cut(s)	1443
Bpu10I	CCTNAGC	1 cut(s)	1241
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	1291
BsaJI	CCNNGG	4 cut(s)	217, 282, 1055, 1128
Bsc4I	CCNNNNNNNGG	6 cut(s)	299, 344, 530, 684, 1061, 1242
Bse1I	ACTGG	3 cut(s)	236, 829, 857
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	2 cut(s)	304, 1395
BseBI	CCWGG	4 cut(s)	1057, 1094, 1203, 1237
BseDI	CCNNGG	4 cut(s)	217, 282, 1055, 1128
BseGI	GGATG	4 cut(s)	123, 213, 249, 1124
BseLI	CCNNNNNNNGG	6 cut(s)	299, 344, 530, 684, 1061, 1242
BseMI	GCAATG	2 cut(s)	304, 1395
BseMII	CTCAG	4 cut(s)	246, 264, 786, 1232
BseNI	ACTGG	3 cut(s)	236, 829, 857
BseXI	GCAGC	4 cut(s)	526, 805, 981, 1372
BseYI	CCCAGC	1 cut(s)	776
BshFI	GGCC	8 cut(s)	165, 202, 260, 281, 287, 636, 661, 1216
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	3 cut(s)	321, 716, 820
BslI	CCNNNNNNNGG	6 cut(s)	299, 344, 530, 684, 1061, 1242
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	3 cut(s)	321, 716, 820
BsnI	GGCC	8 cut(s)	165, 202, 260, 281, 287, 636, 661, 1216
Bsp143I	GATC	5 cut(s)	99, 427, 610, 1071, 1350
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	4 cut(s)	9, 65, 1033, 1343
BspANI	GGCC	8 cut(s)	165, 202, 260, 281, 287, 636, 661, 1216
BspCNI	CTCAG	4 cut(s)	247, 265, 785, 1233
BspLI	GGNNCC	3 cut(s)	201, 337, 928
BspOI	GCTAGC	1 cut(s)	1427
BspPI	GGATC	4 cut(s)	422, 605, 1066, 1358
BsrDI	GCAATG	2 cut(s)	304, 1395
BsrI	ACTGG	3 cut(s)	236, 829, 857
BssECI	CCNNGG	4 cut(s)	217, 282, 1055, 1128
BssMI	GATC	5 cut(s)	99, 427, 610, 1071, 1350
BssT1I	CCWWGG	2 cut(s)	217, 1128
Bst2UI	CCWGG	4 cut(s)	1057, 1094, 1203, 1237
Bst4CI	ACNGT	6 cut(s)	37, 529, 874, 1044, 1081, 1148
Bst6I	CTCTTC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	1291
BstC8I	GCNNGC	4 cut(s)	279, 816, 1157, 1425
BstDEI	CTNAG	6 cut(s)	255, 273, 374, 577, 772, 1241
BstDSI	CCRYGG	1 cut(s)	282
BstENI	CCTNNNNNAGG	1 cut(s)	528
BstF5I	GGATG	4 cut(s)	123, 213, 249, 1124
BstKTI	GATC	5 cut(s)	102, 430, 613, 1074, 1353
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	5 cut(s)	99, 427, 610, 1071, 1350
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 278, 303, 827
BstNI	CCWGG	4 cut(s)	1057, 1094, 1203, 1237
BstNSI	RCATGY	2 cut(s)	1121, 1159
BstSCI	CCNGG	5 cut(s)	292, 1055, 1092, 1201, 1235
BstSFI	CTRYAG	1 cut(s)	528
BstSNI	TACGTA	1 cut(s)	1291
BstV1I	GCAGC	4 cut(s)	526, 805, 981, 1372
BstV2I	GAAGAC	1 cut(s)	1443
BstXI	CCANNNNNNTGG	2 cut(s)	243, 989
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	8 cut(s)	165, 202, 260, 281, 287, 636, 661, 1216
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	4 cut(s)	123, 213, 249, 1124
BtsI	GCAGTG	2 cut(s)	267, 1263
BtsIMutI	CAGTG	4 cut(s)	267, 870, 1086, 1263
Cac8I	GCNNGC	4 cut(s)	279, 816, 1157, 1425
Cfr13I	GGNCC	7 cut(s)	164, 200, 259, 335, 634, 1035, 1215
Csp6I	GTAC	4 cut(s)	68, 714, 1288, 1360
CviAII	CATG	7 cut(s)	490, 994, 1105, 1118, 1156, 1369, 1409
CviQI	GTAC	4 cut(s)	68, 714, 1288, 1360
DdeI	CTNAG	6 cut(s)	255, 273, 374, 577, 772, 1241
DpnI	GATC	5 cut(s)	101, 429, 612, 1073, 1352
DpnII	GATC	5 cut(s)	99, 427, 610, 1071, 1350
DraI	TTTAAA	2 cut(s)	1143, 1222
EaeI	YGGCCR	2 cut(s)	279, 659
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco105I	TACGTA	1 cut(s)	1291
Eco130I	CCWWGG	2 cut(s)	217, 1128
Eco32I	GATATC	1 cut(s)	1086
Eco47I	GGWCC	2 cut(s)	335, 1035
Eco81I	CCTNAGG	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	528
EcoO109I	RGGNCCY	3 cut(s)	200, 259, 1215
EcoRI	GAATTC	1 cut(s)	1461
EcoRII	CCWGG	4 cut(s)	1055, 1092, 1201, 1235
EcoRV	GATATC	1 cut(s)	1086
EcoT14I	CCWWGG	2 cut(s)	217, 1128
ErhI	CCWWGG	2 cut(s)	217, 1128
FaeI	CATG	7 cut(s)	493, 997, 1108, 1121, 1159, 1372, 1412
FaqI	GGGAC	3 cut(s)	321, 716, 820
FatI	CATG	7 cut(s)	489, 993, 1104, 1117, 1155, 1368, 1408
FauNDI	CATATG	1 cut(s)	314
Fnu4HI	GCNGC	5 cut(s)	9, 540, 819, 970, 1386
FokI	GGATG	4 cut(s)	110, 200, 236, 1111
Fsp4HI	GCNGC	5 cut(s)	9, 540, 819, 970, 1386
FspBI	CTAG	4 cut(s)	615, 845, 1160, 1424
GluI	GCNGC	5 cut(s)	9, 540, 819, 970, 1386
GsaI	CCCAGC	1 cut(s)	780
HaeIII	GGCC	8 cut(s)	165, 202, 260, 281, 287, 636, 661, 1216
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	7 cut(s)	493, 997, 1108, 1121, 1159, 1372, 1412
HincII	GTYRAC	1 cut(s)	786
HindII	GTYRAC	1 cut(s)	786
HinfI	GANTC	2 cut(s)	179, 319
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	5 cut(s)	314, 444, 1144, 1204, 1336
Hpy166II	GTNNAC	2 cut(s)	786, 1288
Hpy188I	TCNGA	1 cut(s)	1467
Hpy188III	TCNNGA	2 cut(s)	44, 364
Hpy8I	GTNNAC	2 cut(s)	786, 1288
HpyAV	CCTTC	4 cut(s)	340, 349, 457, 634
HpyCH4III	ACNGT	6 cut(s)	37, 529, 874, 1044, 1081, 1148
HpyCH4IV	ACGT	1 cut(s)	1290
HpyCH4V	TGCA	5 cut(s)	542, 596, 821, 1368, 1388
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 278, 303, 827
HpyF3I	CTNAG	6 cut(s)	255, 273, 374, 577, 772, 1241
HpySE526I	ACGT	1 cut(s)	1290
Hsp92II	CATG	7 cut(s)	493, 997, 1108, 1121, 1159, 1372, 1412
Kzo9I	GATC	5 cut(s)	99, 427, 610, 1071, 1350
LmnI	GCTCC	2 cut(s)	246, 926
Lsp1109I	GCAGC	4 cut(s)	526, 805, 981, 1372
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	4 cut(s)	615, 845, 1160, 1424
MaeII	ACGT	1 cut(s)	1290
MaeIII	GTNAC	3 cut(s)	265, 1011, 1120
MalI	GATC	5 cut(s)	101, 429, 612, 1073, 1352
MboI	GATC	5 cut(s)	99, 427, 610, 1071, 1350
MboII	GAAGA	7 cut(s)	9, 32, 223, 387, 661, 1384, 1448
MfeI	CAATTG	1 cut(s)	962
MlsI	TGGCCA	2 cut(s)	281, 661
MluNI	TGGCCA	2 cut(s)	281, 661
MlyI	GAGTC	2 cut(s)	188, 313
MmeI	TCCRAC	1 cut(s)	859
Mox20I	TGGCCA	2 cut(s)	281, 661
MroXI	GAANNNNTTC	4 cut(s)	902, 1022, 1376, 1461
MscI	TGGCCA	2 cut(s)	281, 661
MseI	TTAA	3 cut(s)	735, 1142, 1221
MslI	CAYNNNNRTG	1 cut(s)	947
Msp20I	TGGCCA	2 cut(s)	281, 661
MspA1I	CMGCKG	2 cut(s)	776, 972
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	5 cut(s)	294, 1057, 1094, 1203, 1237
MunI	CAATTG	1 cut(s)	962
MvaI	CCWGG	4 cut(s)	1057, 1094, 1203, 1237
MwoI	GCNNNNNNNGC	4 cut(s)	171, 278, 303, 827
NciI	CCSGG	1 cut(s)	294
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	5 cut(s)	99, 427, 610, 1071, 1350
NheI	GCTAGC	1 cut(s)	1423
NlaIII	CATG	7 cut(s)	493, 997, 1108, 1121, 1159, 1372, 1412
NlaIV	GGNNCC	3 cut(s)	201, 337, 928
NmuCI	GTSAC	2 cut(s)	265, 1120
NspI	RCATGY	2 cut(s)	1121, 1159
PaeI	GCATGC	1 cut(s)	1159
PdmI	GAANNNNTTC	4 cut(s)	902, 1022, 1376, 1461
PkrI	GCNGC	5 cut(s)	10, 541, 820, 971, 1387
PleI	GAGTC	2 cut(s)	187, 313
PpsI	GAGTC	2 cut(s)	187, 313
Ppu21I	YACGTR	1 cut(s)	1291
Psp6I	CCWGG	4 cut(s)	1055, 1092, 1201, 1235
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	4 cut(s)	1055, 1092, 1201, 1235
PspN4I	GGNNCC	3 cut(s)	201, 337, 928
PspPI	GGNCC	7 cut(s)	164, 200, 259, 335, 634, 1035, 1215
PvuII	CAGCTG	2 cut(s)	776, 972
RsaI	GTAC	4 cut(s)	69, 715, 1289, 1361
RsaNI	GTAC	4 cut(s)	68, 714, 1288, 1360
RseI	CAYNNNNRTG	1 cut(s)	947
SaqAI	TTAA	3 cut(s)	735, 1142, 1221
SatI	GCNGC	5 cut(s)	9, 540, 819, 970, 1386
Sau3AI	GATC	5 cut(s)	99, 427, 610, 1071, 1350
Sau96I	GGNCC	7 cut(s)	164, 200, 259, 335, 634, 1035, 1215
ScaI	AGTACT	1 cut(s)	715
SchI	GAGTC	2 cut(s)	188, 313
ScrFI	CCNGG	5 cut(s)	294, 1057, 1094, 1203, 1237
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	2 cut(s)	335, 1035
SmiMI	CAYNNNNRTG	1 cut(s)	947
SnaBI	TACGTA	1 cut(s)	1291
SphI	GCATGC	1 cut(s)	1159
SsiI	CCGC	4 cut(s)	9, 65, 1033, 1343
SspMI	CTAG	4 cut(s)	615, 845, 1160, 1424
StyD4I	CCNGG	5 cut(s)	292, 1055, 1092, 1201, 1235
StyI	CCWWGG	2 cut(s)	217, 1128
TaaI	ACNGT	6 cut(s)	37, 529, 874, 1044, 1081, 1148
TaiI	ACGT	1 cut(s)	1293
TaqI	TCGA	2 cut(s)	840, 1164
TaqII	GACCGA	1 cut(s)	323
TatI	WGTACW	1 cut(s)	713
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	735, 1142, 1221
Tru9I	TTAA	3 cut(s)	735, 1142, 1221
TscAI	CASTG	4 cut(s)	274, 877, 1086, 1263
TseFI	GTSAC	2 cut(s)	265, 1120
TseI	GCWGC	4 cut(s)	539, 818, 969, 1385
Tsp45I	GTSAC	2 cut(s)	265, 1120
TspRI	CASTG	4 cut(s)	274, 877, 1086, 1263
VpaK11BI	GGWCC	2 cut(s)	335, 1035
XagI	CCTNNNNNAGG	1 cut(s)	528
XapI	RAATTY	4 cut(s)	25, 1108, 1224, 1461
XceI	RCATGY	2 cut(s)	1121, 1159
XmnI	GAANNNNTTC	4 cut(s)	902, 1022, 1376, 1461
XspI	CTAG	4 cut(s)	615, 845, 1160, 1424
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.