Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017035.1

Orthogroup ID

OG0017279

Physical Location & Seq

Genomic Coordinates Reverse (-)

4179 .. 5934

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017035.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

atgaaaacaccccaacattctcccagttcagaaaagcttcttgaaggtgaagaaaaacaatgcctaaaagaacctccaactatcactaagatcacaaccaaaaaactagctttcatcccattactctgcctcatctactttcaagtctctggtggcccttatggcacagaaaccatggttggtgctgggggtactttctatgcaatccttggcatcatattcttcccaatcctctggagcgttcccgaggccctcatcactgctgaactgtccactgcctttcccggcaatggtggcttcgtcatatggactcaccaagcctttggtcccttctggggcttcctcattgggttttggaagttccttagtgctgtcataaacttatcttcatacccaattatctgtttacgctacattgatccagatcttccacttttctcctcaagcacacctcactatcttgtaatctcagtttcgactctgtttctctctgttctcaactttactggtttgcatatagtgggttatgcttcaatatctttggggattctgtcatacctgccctttctagtaattacttgttttgcaattccccaaattgatcctagccactgggtacttctaggccaaaagggtaagaaaaaagattggcctttgttctttaataccctcttttggaacatgaattgttgggacaatgttagtactttagtagcagagggtgttacacaaccctcaaaaacattaccaaaagcatttctctcaagtggattgatcacttgctttgctcatttagtacctcttctagcttcagttggggctatgaaaattgacctagatgattgggttgatggatattacacagttgtggcagaaaaaattgtggggaaaaaattcaaaaggtgggttaggattggagcctttttatctggtattggtgtttttcagtcccagctgagcagttgttcatatcagcttctaggtatgactgaattagggttgttaccaacatttttcagtgcacggtccaaacggttcaacactccttgggtggggattctgatatcaacagtgatatcgatcttaatttcaagtatgaaattcagacatgtcacatcattagtgaatgttttctacagtctggggatgatgttcgaaatcgcagcttttatttccttgaggatgaagtttccacatgtggataggcccttcaaaattccacttacaaagctgaggagtctgatagcaatgtgcttccttccatttgggtttttattgtatgtggtttgtgttgggcagccaattgtgtttttggtggttgctttgctgaccatgttgggcattctttggtatttctgcatgaggattttccaggctaagatgtggctagacttcaaccatgttatgaaaaagctagcagattatgaaaatttgggctactatgatcagattgtgaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

486

Amino Acids

54.58

Weight (kDa)

9.12

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017279)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45290
malus_domestica	MD03G1006600.v1.1 MD11G1009700.v1.1
prunus_persica	Prupe.6G006300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0082961
rosa_laevigata	RLG00000037005
rosa_multiflora	Rmu_sc0017035.1_g000001
rosa_rugosa	Rorug05G0481700
rosa_samantha	Rh5AG531300 Rh5BG558300 Rh5CG581200 Rh5DG567100
rosa_wichuraiana	Rw5G049730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	567
AclWI	GGATC	2 cut(s)	413, 596
AcsI	RAATTY	4 cut(s)	893, 1100, 1215, 1429
AcuI	CTGAAG	1 cut(s)	795
AfaI	GTAC	4 cut(s)	193, 618, 706, 798
AfiI	CCNNNNNNNGG	4 cut(s)	290, 335, 675, 1052
AflIII	ACRYGT	2 cut(s)	1108, 1195
AgsI	TTSAA	8 cut(s)	44, 143, 534, 898, 1039, 1092, 1213, 1396
AjnI	CCWGG	1 cut(s)	1371
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AleI	CACNNNNGTG	1 cut(s)	866
AluBI	AGCT	8 cut(s)	37, 110, 809, 955, 976, 1166, 1231, 1414
AluI	AGCT	8 cut(s)	37, 110, 809, 955, 976, 1166, 1231, 1414
Alw21I	GWGCWC	1 cut(s)	1024
Alw26I	GTCTC	1 cut(s)	151
Alw44I	GTGCAC	1 cut(s)	1020
AlwI	GGATC	2 cut(s)	413, 596
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	5 cut(s)	154, 249, 625, 650, 1205
ApaLI	GTGCAC	1 cut(s)	1020
ApeKI	GCWGC	2 cut(s)	1163, 1297
ApoI	RAATTY	4 cut(s)	893, 1100, 1215, 1429
Asp700I	GAANNNNTTC	3 cut(s)	36, 893, 1130
AspS9I	GGNCC	5 cut(s)	155, 250, 326, 1026, 1206
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	59, 305
AsuII	TTCGAA	1 cut(s)	1155
AsuNHI	GCTAGC	1 cut(s)	1414
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	326, 1026
BaeGI	GKGCMC	1 cut(s)	1024
Bbv12I	GWGCWC	1 cut(s)	1024
BbvCI	CCTCAGC	1 cut(s)	1232
BbvI	GCAGC	2 cut(s)	1175, 1309
BccI	CCATC	1 cut(s)	845
BciT130I	CCWGG	1 cut(s)	1373
BclI	TGATCA	2 cut(s)	774, 1444
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	9 cut(s)	107, 569, 606, 623, 806, 836, 980, 1388, 1415
BfmI	CTRYAG	1 cut(s)	1135
BfuAI	ACCTGC	1 cut(s)	567
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	2 cut(s)	1164, 1298
BlpI	GCTNAGC	1 cut(s)	956
BlsI	GCNGC	2 cut(s)	1165, 1299
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	2 cut(s)	285, 1373
Bme18I	GGWCC	2 cut(s)	326, 1026
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	5 cut(s)	155, 250, 326, 1026, 1206
BmiI	GGNNCC	2 cut(s)	328, 919
BmrFI	CCNGG	2 cut(s)	285, 1373
BmrI	ACTGGG	2 cut(s)	18, 622
BmsI	GCATC	1 cut(s)	222
BmtI	GCTAGC	1 cut(s)	1418
BmuI	ACTGGG	2 cut(s)	18, 622
BpmI	CTGGAG	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	1232
Bpu1102I	GCTNAGC	1 cut(s)	956
Bpu14I	TTCGAA	1 cut(s)	1155
BpuEI	CTTGAG	3 cut(s)	427, 748, 1198
BpuMI	CCSGG	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	1079
BsaBI	GATNNNNATC	2 cut(s)	423, 1079
BsaJI	CCNNGG	4 cut(s)	174, 208, 246, 1046
Bsc4I	CCNNNNNNNGG	4 cut(s)	290, 335, 675, 1052
Bse1I	ACTGG	3 cut(s)	24, 511, 617
Bse3DI	GCAATG	2 cut(s)	295, 1254
Bse8I	GATNNNNATC	2 cut(s)	423, 1079
BseBI	CCWGG	1 cut(s)	1373
BseCI	ATCGAT	1 cut(s)	1079
BseDI	CCNNGG	4 cut(s)	174, 208, 246, 1046
BseGI	GGATG	3 cut(s)	114, 1152, 1188
BseJI	GATNNNNATC	2 cut(s)	423, 1079
BseLI	CCNNNNNNNGG	4 cut(s)	290, 335, 675, 1052
BseMI	GCAATG	2 cut(s)	295, 1254
BseMII	CTCAG	3 cut(s)	483, 947, 1223
BseNI	ACTGG	3 cut(s)	24, 511, 617
BseRI	GAGGAG	2 cut(s)	430, 1249
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	2 cut(s)	1175, 1309
BseYI	CCCAGC	2 cut(s)	185, 951
BshFI	GGCC	5 cut(s)	156, 251, 627, 652, 1207
BshVI	ATCGAT	1 cut(s)	1079
BsiHKAI	GWGCWC	1 cut(s)	1024
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	3 cut(s)	312, 707, 934
BslI	CCNNNNNNNGG	4 cut(s)	290, 335, 675, 1052
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	3 cut(s)	312, 707, 934
BsmI	GAATGC	1 cut(s)	1341
BsnI	GGCC	5 cut(s)	156, 251, 627, 652, 1207
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	1155
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp143I	GATC	7 cut(s)	90, 418, 424, 601, 774, 1080, 1444
Bsp1720I	GCTNAGC	1 cut(s)	956
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	5 cut(s)	156, 251, 627, 652, 1207
BspCNI	CTCAG	3 cut(s)	482, 948, 1224
BspDI	ATCGAT	1 cut(s)	1079
BspLI	GGNNCC	2 cut(s)	328, 919
BspMI	ACCTGC	1 cut(s)	567
BspOI	GCTAGC	1 cut(s)	1418
BspPI	GGATC	2 cut(s)	413, 596
BspT104I	TTCGAA	1 cut(s)	1155
BsrDI	GCAATG	2 cut(s)	295, 1254
BsrI	ACTGG	3 cut(s)	24, 511, 617
BssECI	CCNNGG	4 cut(s)	174, 208, 246, 1046
BssMI	GATC	7 cut(s)	90, 418, 424, 601, 774, 1080, 1444
BssT1I	CCWWGG	3 cut(s)	174, 208, 1046
Bst2UI	CCWGG	1 cut(s)	1373
Bst4CI	ACNGT	6 cut(s)	270, 865, 1026, 1035, 1072, 1139
Bst6I	CTCTTC	1 cut(s)	807
BstBI	TTCGAA	1 cut(s)	1155
BstC8I	GCNNGC	1 cut(s)	1416
BstDEI	CTNAG	6 cut(s)	87, 365, 469, 956, 1232, 1377
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	114, 1152, 1188
BstKTI	GATC	7 cut(s)	93, 421, 427, 604, 777, 1083, 1447
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	7 cut(s)	90, 418, 424, 601, 774, 1080, 1444
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 294
BstNI	CCWGG	1 cut(s)	1373
BstNSI	RCATGY	2 cut(s)	1112, 1199
BstSCI	CCNGG	2 cut(s)	283, 1371
BstSFI	CTRYAG	1 cut(s)	1135
BstSLI	GKGCMC	1 cut(s)	1024
BstV1I	GCAGC	2 cut(s)	1175, 1309
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	2 cut(s)	234, 323
BstYI	RGATCY	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	1079
BsuRI	GGCC	5 cut(s)	156, 251, 627, 652, 1207
BsuTUI	ATCGAT	1 cut(s)	1079
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	114, 1152, 1188
BtsI	GCAGTG	2 cut(s)	258, 273
BtsIMutI	CAGTG	5 cut(s)	258, 273, 610, 1024, 1077
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	1416
Cfr13I	GGNCC	5 cut(s)	155, 250, 326, 1026, 1206
ClaI	ATCGAT	1 cut(s)	1079
Csp6I	GTAC	4 cut(s)	192, 617, 705, 797
CviAII	CATG	7 cut(s)	175, 682, 1109, 1196, 1333, 1360, 1400
CviQI	GTAC	4 cut(s)	192, 617, 705, 797
DdeI	CTNAG	6 cut(s)	87, 365, 469, 956, 1232, 1377
DpnI	GATC	7 cut(s)	92, 420, 426, 603, 776, 1082, 1446
DpnII	GATC	7 cut(s)	90, 418, 424, 601, 774, 1080, 1444
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco130I	CCWWGG	3 cut(s)	174, 208, 1046
Eco32I	GATATC	2 cut(s)	1065, 1077
Eco47I	GGWCC	2 cut(s)	326, 1026
Eco57I	CTGAAG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	245
EcoO109I	RGGNCCY	2 cut(s)	250, 1206
EcoRII	CCWGG	1 cut(s)	1371
EcoRV	GATATC	2 cut(s)	1065, 1077
EcoT14I	CCWWGG	3 cut(s)	174, 208, 1046
ErhI	CCWWGG	3 cut(s)	174, 208, 1046
FaeI	CATG	7 cut(s)	178, 685, 1112, 1199, 1336, 1363, 1403
FaqI	GGGAC	3 cut(s)	312, 707, 934
FatI	CATG	7 cut(s)	174, 681, 1108, 1195, 1332, 1359, 1399
FauNDI	CATATG	1 cut(s)	305
FbaI	TGATCA	2 cut(s)	774, 1444
Fnu4HI	GCNGC	2 cut(s)	1164, 1298
FokI	GGATG	3 cut(s)	101, 1159, 1195
Fsp4HI	GCNGC	2 cut(s)	1164, 1298
FspBI	CTAG	9 cut(s)	107, 569, 606, 623, 806, 836, 980, 1388, 1415
GluI	GCNGC	2 cut(s)	1164, 1298
GsaI	CCCAGC	2 cut(s)	189, 955
GsuI	CTGGAG	1 cut(s)	256
HaeIII	GGCC	5 cut(s)	156, 251, 627, 652, 1207
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	7 cut(s)	178, 685, 1112, 1199, 1336, 1363, 1403
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	5 cut(s)	310, 478, 547, 1057, 1237
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	59, 305
Hpy166II	GTNNAC	3 cut(s)	273, 407, 1022
Hpy188I	TCNGA	5 cut(s)	31, 1062, 1106, 1242, 1449
Hpy188III	TCNNGA	4 cut(s)	41, 235, 245, 422
Hpy8I	GTNNAC	3 cut(s)	273, 407, 1022
HpyAV	CCTTC	4 cut(s)	38, 340, 1219, 1268
HpyCH4III	ACNGT	6 cut(s)	270, 865, 1026, 1035, 1072, 1139
HpyCH4V	TGCA	5 cut(s)	203, 514, 587, 1022, 1359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 294
HpyF3I	CTNAG	6 cut(s)	87, 365, 469, 956, 1232, 1377
Hsp92II	CATG	7 cut(s)	178, 685, 1112, 1199, 1336, 1363, 1403
Ksp22I	TGATCA	2 cut(s)	774, 1444
Kzo9I	GATC	7 cut(s)	90, 418, 424, 601, 774, 1080, 1444
LmnI	GCTCC	2 cut(s)	237, 917
Lsp1109I	GCAGC	2 cut(s)	1175, 1309
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	9 cut(s)	107, 569, 606, 623, 806, 836, 980, 1388, 1415
MaeIII	GTNAC	3 cut(s)	724, 1002, 1111
MalI	GATC	7 cut(s)	92, 420, 426, 603, 776, 1082, 1446
MboI	GATC	7 cut(s)	90, 418, 424, 601, 774, 1080, 1444
MboII	GAAGA	5 cut(s)	62, 214, 378, 419, 794
MfeI	CAATTG	1 cut(s)	1302
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	1024
MlyI	GAGTC	3 cut(s)	304, 472, 1246
MmeI	TCCRAC	1 cut(s)	101
MroXI	GAANNNNTTC	3 cut(s)	36, 893, 1130
MseI	TTAA	2 cut(s)	663, 1085
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	1 cut(s)	955
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	285, 1373
MunI	CAATTG	1 cut(s)	1302
Mva1269I	GAATGC	1 cut(s)	1341
MvaI	CCWGG	1 cut(s)	1373
MwoI	GCNNNNNNNGC	2 cut(s)	162, 294
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	7 cut(s)	90, 418, 424, 601, 774, 1080, 1444
NheI	GCTAGC	1 cut(s)	1414
NlaIII	CATG	7 cut(s)	178, 685, 1112, 1199, 1336, 1363, 1403
NlaIV	GGNNCC	2 cut(s)	328, 919
NmuCI	GTSAC	1 cut(s)	1111
NspI	RCATGY	2 cut(s)	1112, 1199
NspV	TTCGAA	1 cut(s)	1155
OliI	CACNNNNGTG	1 cut(s)	866
PciI	ACATGT	2 cut(s)	1108, 1195
PctI	GAATGC	1 cut(s)	1341
PdmI	GAANNNNTTC	3 cut(s)	36, 893, 1130
PfeI	GAWTC	2 cut(s)	547, 1057
PkrI	GCNGC	2 cut(s)	1165, 1299
PleI	GAGTC	3 cut(s)	304, 472, 1245
PpsI	GAGTC	3 cut(s)	304, 472, 1245
PscI	ACATGT	2 cut(s)	1108, 1195
Psp6I	CCWGG	1 cut(s)	1371
PspFI	CCCAGC	2 cut(s)	185, 951
PspGI	CCWGG	1 cut(s)	1371
PspN4I	GGNNCC	2 cut(s)	328, 919
PspPI	GGNCC	5 cut(s)	155, 250, 326, 1026, 1206
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	1 cut(s)	955
RsaI	GTAC	4 cut(s)	193, 618, 706, 798
RsaNI	GTAC	4 cut(s)	192, 617, 705, 797
RseI	CAYNNNNRTG	1 cut(s)	866
SaqAI	TTAA	2 cut(s)	663, 1085
SatI	GCNGC	2 cut(s)	1164, 1298
Sau3AI	GATC	7 cut(s)	90, 418, 424, 601, 774, 1080, 1444
Sau96I	GGNCC	5 cut(s)	155, 250, 326, 1026, 1206
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	3 cut(s)	304, 472, 1246
ScrFI	CCNGG	2 cut(s)	285, 1373
SduI	GDGCHC	1 cut(s)	1024
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	1135
SfuI	TTCGAA	1 cut(s)	1155
SinI	GGWCC	2 cut(s)	326, 1026
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	3 cut(s)	442, 763, 1177
SmoI	CTYRAG	3 cut(s)	442, 763, 1177
SspMI	CTAG	9 cut(s)	107, 569, 606, 623, 806, 836, 980, 1388, 1415
StyD4I	CCNGG	2 cut(s)	283, 1371
StyI	CCWWGG	3 cut(s)	174, 208, 1046
TaaI	ACNGT	6 cut(s)	270, 865, 1026, 1035, 1072, 1139
TaqI	TCGA	3 cut(s)	476, 1079, 1155
TatI	WGTACW	1 cut(s)	704
TfiI	GAWTC	2 cut(s)	547, 1057
Tru1I	TTAA	2 cut(s)	663, 1085
Tru9I	TTAA	2 cut(s)	663, 1085
TscAI	CASTG	5 cut(s)	265, 280, 617, 1024, 1077
TseFI	GTSAC	1 cut(s)	1111
TseI	GCWGC	2 cut(s)	1163, 1297
Tsp45I	GTSAC	1 cut(s)	1111
TspRI	CASTG	5 cut(s)	265, 280, 617, 1024, 1077
VneI	GTGCAC	1 cut(s)	1020
VpaK11BI	GGWCC	2 cut(s)	326, 1026
XapI	RAATTY	4 cut(s)	893, 1100, 1215, 1429
XceI	RCATGY	2 cut(s)	1112, 1199
XmnI	GAANNNNTTC	3 cut(s)	36, 893, 1130
XspI	CTAG	9 cut(s)	107, 569, 606, 623, 806, 836, 980, 1388, 1415
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.