FvH4_4g00320

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017054
Physical Location & Seq
Reverse (-)
316092 .. 318676
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00320.t1

Sequence Viewer

Length: 669 bp
ATGGGGCAACAATCGTTGATCTATAGCTTCGTGGCAAGGGGCACTGTGATTCTGGCCGAGTACACCGAGTTCACCGGCAATTTCACAAGCATCGCTTCTCAATGCCTCCAGAAGCTTCCTGCCTCCAACAACAAGTTCACCTACAATTGCGACGGCCACACCTTCAATTACCTCGTCGAAAACGGCTTCACCTACTGTGTAGTTGCAGCTGAATCTGCAGGTAGGCAAGTTCCCATTGCCTATCTGGAAAGAATCAAGGATGATTTCAACAAAAGATATGCTGGTGGAAAAGCTGGGACTGCAACAGCCAATGGCTTGAACAGAGAGTTTGGACCCAAGCTGAAGGAGCACATGAAGTACTGTGTGGAGCATCCTGAAGAGATCAACAAGCTTGCAAAAGTGAAGGCTCAGGTTTCTGAGGTCAAGGGTGTTATGATGGAAAATATTGAGAAGGTTCTTGACCGTGGTGAGAAGATTGAGCTGTTGGTGGATAAAACTGATAATCTCCGCTCCCAGGCTCAAGATTTCAAGCAGCAAGGAACAAAAATGAGAAGGAAGATGTGGTTTCAGAATATGAAGATGAAGTTGATTGTTGCGGGGATTGTTGTTGCCTTGGGCCTCATCTTATTTTTGTCTATCTGCGGTGGTTTCAAGTGTGTTCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

223

Amino Acids

24.94

Weight (kDa)

9.22

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Longin PF13774 32 - 111 1.7e-22 Regulated-SNARE-like domain
Synaptobrevin PF00957 130 - 208 2.1e-30 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017054)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00320
malus_domestica MD00G1099600.v1.1 MD04G1003900.v1.1
prunus_persica Prupe.1G003400_v2.0.a1
pyrus_communis pycom04g00400 pycom420g00810
rosa_laevigata RLG00000010253
rosa_roxburghii Rroxscaffold_5G00333070
rosa_rugosa Rorug03G0300000
rosa_samantha Rh4BG002600 Rh4CG003400 Rh4DG002900
rosa_wichuraiana Rw4G000610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 510
AciI CCGC 3 cut(s) 508, 596, 642
AcoI YGGCCR 2 cut(s) 54, 154
AcuI CTGAAG 2 cut(s) 362, 396
AfaI GTAC 2 cut(s) 62, 359
AfiI CCNNNNNNNGG 1 cut(s) 514
AgsI TTSAA 6 cut(s) 166, 268, 319, 529, 652, 662
AjnI CCWGG 1 cut(s) 513
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 7 cut(s) 27, 115, 209, 293, 340, 391, 481
AluI AGCT 7 cut(s) 27, 115, 209, 293, 340, 391, 481
Alw21I GWGCWC 1 cut(s) 351
AoxI GGCC 3 cut(s) 54, 154, 616
ApeKI GCWGC 2 cut(s) 206, 532
AspS9I GGNCC 2 cut(s) 332, 616
AsuHPI GGTGA 4 cut(s) 64, 130, 181, 479
AvaII GGWCC 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 218, 544
BccI CCATC 1 cut(s) 430
BceAI ACGGC 2 cut(s) 169, 199
BciT130I CCWGG 1 cut(s) 515
BfmI CTRYAG 2 cut(s) 22, 216
BfuAI ACCTGC 1 cut(s) 209
BisI GCNGC 2 cut(s) 207, 533
BlsI GCNGC 2 cut(s) 208, 534
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 515
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 332, 616
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 515
BmsI GCATC 2 cut(s) 99, 379
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 504
BsaJI CCNNGG 3 cut(s) 463, 513, 612
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse118I RCCGGY 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 515
BseDI CCNNGG 3 cut(s) 463, 513, 612
BseGI GGATG 2 cut(s) 265, 370
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 408, 422
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 2 cut(s) 218, 544
BseYI CCCAGC 1 cut(s) 293
BshFI GGCC 3 cut(s) 56, 156, 618
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 514
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 3 cut(s) 56, 156, 618
Bsp1286I GDGCHC 2 cut(s) 44, 351
Bsp143I GATC 2 cut(s) 18, 381
BspACI CCGC 3 cut(s) 508, 596, 642
BspANI GGCC 3 cut(s) 56, 156, 618
BspCNI CTCAG 2 cut(s) 409, 421
BspLI GGNNCC 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 510
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 3 cut(s) 463, 513, 612
BssMI GATC 2 cut(s) 18, 381
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 4 cut(s) 46, 197, 362, 464
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 408, 417
BstDSI CCRYGG 1 cut(s) 463
BstF5I GGATG 2 cut(s) 265, 370
BstKTI GATC 2 cut(s) 21, 384
BstMBI GATC 2 cut(s) 18, 381
BstMWI GCNNNNNNNGC 3 cut(s) 215, 299, 346
BstNI CCWGG 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 513
BstSFI CTRYAG 2 cut(s) 22, 216
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 218, 544
BsuRI GGCC 3 cut(s) 56, 156, 618
BtgI CCRYGG 1 cut(s) 463
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 265, 370
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 393
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 332, 616
Csp6I GTAC 2 cut(s) 61, 358
CviAII CATG 1 cut(s) 352
CviQI GTAC 2 cut(s) 61, 358
DdeI CTNAG 2 cut(s) 408, 417
DpnI GATC 2 cut(s) 20, 383
DpnII GATC 2 cut(s) 18, 381
EaeI YGGCCR 2 cut(s) 54, 154
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 362, 396
EcoRII CCWGG 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 1 cut(s) 355
FaiI YATR 5 cut(s) 24, 279, 353, 434, 575
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FaqI GGGAC 1 cut(s) 310
FatI CATG 1 cut(s) 351
FauI CCCGC 1 cut(s) 589
Fnu4HI GCNGC 2 cut(s) 207, 533
FokI GGATG 2 cut(s) 272, 357
Fsp4HI GCNGC 2 cut(s) 207, 533
GluI GCNGC 2 cut(s) 207, 533
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 3 cut(s) 56, 156, 618
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 355
HindIII AAGCTT 2 cut(s) 113, 389
HinfI GANTC 3 cut(s) 49, 212, 252
HpaII CCGG 1 cut(s) 75
HphI GGTGA 4 cut(s) 64, 130, 181, 479
Hpy166II GTNNAC 3 cut(s) 63, 72, 138
Hpy188I TCNGA 2 cut(s) 418, 570
Hpy188III TCNNGA 5 cut(s) 109, 245, 374, 458, 521
Hpy8I GTNNAC 3 cut(s) 63, 72, 138
Hpy99I CGWCG 2 cut(s) 155, 179
HpyAV CCTTC 5 cut(s) 172, 337, 397, 445, 546
HpyCH4III ACNGT 4 cut(s) 46, 197, 362, 464
HpyCH4V TGCA 4 cut(s) 206, 218, 302, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 299, 346
HpyF3I CTNAG 2 cut(s) 408, 417
Hsp92II CATG 1 cut(s) 355
Kzo9I GATC 2 cut(s) 18, 381
LmnI GCTCC 3 cut(s) 346, 367, 515
Lsp1109I GCAGC 2 cut(s) 218, 544
LweI GCATC 2 cut(s) 99, 379
MalI GATC 2 cut(s) 20, 383
MbiI CCGCTC 1 cut(s) 510
MboI GATC 2 cut(s) 18, 381
MboII GAAGA 4 cut(s) 389, 484, 568, 589
MfeI CAATTG 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 44, 351
MluCI AATT 3 cut(s) 79, 145, 166
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 5 cut(s) 116, 133, 182, 412, 629
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 515
MunI CAATTG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 515
MwoI GCNNNNNNNGC 3 cut(s) 215, 299, 346
NdeII GATC 2 cut(s) 18, 381
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 1 cut(s) 334
NmeAIII GCCGAG 1 cut(s) 82
PfeI GAWTC 3 cut(s) 49, 212, 252
PkrI GCNGC 2 cut(s) 208, 534
Psp6I CCWGG 1 cut(s) 513
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 2 cut(s) 332, 616
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstI CTGCAG 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 62, 359
RsaNI GTAC 2 cut(s) 61, 358
SatI GCNGC 2 cut(s) 207, 533
Sau3AI GATC 2 cut(s) 18, 381
Sau96I GGNCC 2 cut(s) 332, 616
ScaI AGTACT 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 515
SduI GDGCHC 2 cut(s) 44, 351
SfaNI GCATC 2 cut(s) 99, 379
SfcI CTRYAG 2 cut(s) 22, 216
SinI GGWCC 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
Sse9I AATT 3 cut(s) 79, 145, 166
SsiI CCGC 3 cut(s) 508, 596, 642
SspI AATATT 1 cut(s) 445
StyD4I CCNGG 1 cut(s) 513
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 4 cut(s) 46, 197, 362, 464
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 79, 145, 166
TatI WGTACW 2 cut(s) 60, 357
TfiI GAWTC 3 cut(s) 49, 212, 252
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 206, 532
TspDTI ATGAA 3 cut(s) 368, 590, 596
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.