pycom04g00400

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0017054
Physical Location & Seq
Reverse (-)
396251 .. 397544
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g00400.1

Sequence Viewer

Length: 378 bp
ATGGGGCAGCAATCTCTGATCTACAGCTTCGTCGCTCGAGGCTCTGTGATTCTCGCCGAGTACACAGAGTTCACCGGAAATTTCACCACCATCGCCGCTCAATGCCTCCAGAAGCTTCCTTCCTCCAACAACAAGTTCACCTACAACTGCGATGGCCACACCTTCAATTACCTCGTCGAAAACGGCTTCACCTACTGTGTAGTTGCTGCTGAATCTGCTGGGAGGCAAATTCCAATTGCCTACCTGGAGAGAATCAAGGATGATTTCAACAAAAGATATGGTGGTGGGAAAGCTGCGACTGCTGTTGCCAACGGACTGAACAGAGAGTTTGGACCCAAACTGAAGGACCACATGAAATACTGTGTTGATCGACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

126

Amino Acids

13.91

Weight (kDa)

8.68

Isoelectric Point (pI)

26.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Longin PF13774 32 - 111 1.2e-23 Regulated-SNARE-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017054)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00320
malus_domestica MD00G1099600.v1.1 MD04G1003900.v1.1
prunus_persica Prupe.1G003400_v2.0.a1
pyrus_communis pycom04g00400 pycom420g00810
rosa_laevigata RLG00000010253
rosa_roxburghii Rroxscaffold_5G00333070
rosa_rugosa Rorug03G0300000
rosa_samantha Rh4BG002600 Rh4CG003400 Rh4DG002900
rosa_wichuraiana Rw4G000610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 98
AciI CCGC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 2 cut(s) 79, 228
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 2 cut(s) 166, 268
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 27, 115, 293
AluI AGCT 3 cut(s) 27, 115, 293
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 7, 206, 293
ApoI RAATTY 2 cut(s) 79, 228
AspS9I GGNCC 2 cut(s) 332, 346
AsuHPI GGTGA 4 cut(s) 64, 76, 130, 181
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 2 cut(s) 332, 346
BalI TGGCCA 1 cut(s) 156
BbvI GCAGC 3 cut(s) 19, 193, 280
BccI CCATC 2 cut(s) 98, 146
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 22
BisI GCNGC 4 cut(s) 8, 96, 207, 294
BlsI GCNGC 4 cut(s) 9, 97, 208, 295
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 2 cut(s) 332, 346
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 332, 346
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 245
BpmI CTGGAG 2 cut(s) 92, 266
BsaWI WCCGGW 1 cut(s) 74
BseBI CCWGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 265
BseXI GCAGC 3 cut(s) 19, 193, 280
BseYI CCCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 75
BsnI GGCC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 2 cut(s) 18, 367
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 334
BsrBI CCGCTC 1 cut(s) 98
BssMI GATC 2 cut(s) 18, 367
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 197, 362
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 2 cut(s) 21, 370
BstMBI GATC 2 cut(s) 18, 367
BstMWI GCNNNNNNNGC 2 cut(s) 215, 299
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 3 cut(s) 19, 193, 280
BsuRI GGCC 1 cut(s) 156
BtgZI GCGATG 2 cut(s) 76, 165
BtsCI GGATG 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 332, 346
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 352
CviJI RGCY 6 cut(s) 27, 42, 115, 156, 186, 293
CviKI_1 RGCY 6 cut(s) 27, 42, 115, 156, 186, 293
CviQI GTAC 1 cut(s) 61
DpnI GATC 2 cut(s) 20, 369
DpnII GATC 2 cut(s) 18, 367
EaeI YGGCCR 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 332, 346
Eco57I CTGAAG 1 cut(s) 362
Eco88I CYCGRG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 243
FaeI CATG 1 cut(s) 355
FaiI YATR 2 cut(s) 279, 353
FatI CATG 1 cut(s) 351
Fnu4HI GCNGC 4 cut(s) 8, 96, 207, 294
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 4 cut(s) 8, 96, 207, 294
GluI GCNGC 4 cut(s) 8, 96, 207, 294
GsaI CCCAGC 1 cut(s) 222
GsuI CTGGAG 2 cut(s) 92, 266
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 3 cut(s) 49, 212, 252
HpaII CCGG 1 cut(s) 75
HphI GGTGA 4 cut(s) 64, 76, 130, 181
Hpy166II GTNNAC 3 cut(s) 63, 72, 138
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 3 cut(s) 63, 72, 138
Hpy99I CGWCG 2 cut(s) 35, 179
HpyAV CCTTC 3 cut(s) 129, 172, 337
HpyCH4III ACNGT 2 cut(s) 197, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 299
Hsp92II CATG 1 cut(s) 355
Kzo9I GATC 2 cut(s) 18, 367
LpnPI CCDG 5 cut(s) 88, 122, 204, 230, 257
Lsp1109I GCAGC 3 cut(s) 19, 193, 280
MalI GATC 2 cut(s) 20, 369
MbiI CCGCTC 1 cut(s) 98
MboI GATC 2 cut(s) 18, 367
MfeI CAATTG 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 4 cut(s) 79, 166, 228, 234
MluNI TGGCCA 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 5 cut(s) 32, 116, 133, 182, 216
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 156
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 215, 299
NdeII GATC 2 cut(s) 18, 367
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 1 cut(s) 334
NmeAIII GCCGAG 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 36
PfeI GAWTC 3 cut(s) 49, 212, 252
PkrI GCNGC 4 cut(s) 9, 97, 208, 295
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 2 cut(s) 332, 346
PspXI VCTCGAGB 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SatI GCNGC 4 cut(s) 8, 96, 207, 294
Sau3AI GATC 2 cut(s) 18, 367
Sau96I GGNCC 2 cut(s) 332, 346
ScrFI CCNGG 1 cut(s) 245
SetI ASST 8 cut(s) 29, 117, 143, 164, 174, 194, 246, 295
SfcI CTRYAG 1 cut(s) 22
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 2 cut(s) 332, 346
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 4 cut(s) 79, 166, 228, 234
SsiI CCGC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 197, 362
TaqI TCGA 3 cut(s) 37, 177, 370
TasI AATT 4 cut(s) 79, 166, 228, 234
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 3 cut(s) 49, 212, 252
TseI GCWGC 3 cut(s) 7, 206, 293
TspDTI ATGAA 1 cut(s) 368
TspGWI ACGGA 1 cut(s) 327
VpaK11BI GGWCC 2 cut(s) 332, 346
XapI RAATTY 2 cut(s) 79, 228
XhoI CTCGAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.