FvH4_4g01000

Protein of unknown function (DUF4005)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
962395 .. 964962
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01000.t2

Sequence Viewer

Length: 1401 bp
ATGGGGAAAACAGGCAAATGGCTTAGAAGCTTCTTGGCTGGAAAGAAAGACAAAGATCACAAGGATAAGGAGAAATGTCCCACCACTACTACTACCTCTAATCAGAATCGCTCACCTGCTACAACTCATGACCAGAATCCTACTACTCCAATTTCAACACCAAAAGAGAAGAGGAGGTGGAGTTTCAGAAGGTCATCTGCCACATCCCCAGCTTCGAAGGACTCAAGTGTTGTAGAAACACCAACCACACCGCCACCTGTGCACACCACATTGGATTTTTCTGCTAATTTTGAGCAGAAAAAACATGCCTTGGCTGTGGCGGCAGCCACTGCTGCAGTTGCTGATGCAACTGCTGCTGCTGCACAAGCTGCAGCTGCTGTCATGCGGCTGACAGCAGCGGCCAATGGGAAAGCTGCCGCCATTGAAGAAGCGGCCGCCATCAAAATTCAATCTGTATTCCGTTCTTATCTGGCAAGAAAAGCATTATGTGCATTGAAAGGACTAGTAAAGTTGCAGGCATTGGTAAGGGGTCACCTGGTGAGGAAACAGGCAAAAGCCACGCTGCGCTGCATGCAGGCATTGGTGACAGCACAGGCTCGAGCTCGAGCTCAGAGGATTAGGATGGTTGAAGATGGAAATACTGTTAATCCTAGGTCATCCACCGGCAGAAGGTCTTTGCAGGACAATCGGCTCAGGCATTCTCATAATGAATTTGATAGAGGCATGGAAGAGAACATTAAGATTGTGGAGATGGATGTTGGGGAATCAAAAGGAAATGTGAAGAGCAGAAACAGCTACTCGAATCACACACAAGCAGATCGACCAGACTCTAGATTGTCGACTCAGTCTGCACCAAATCATCAATTATACATAAAGCCAGACAACTACAGCAATGTCTCACCAGCTCCATCAGCTCTGACTCAGGACATGATGAGTCCAGGAGCCTGCAGTGGCCATTTTGAGGACTTCTCCTTTGGAACAGCACAAAGCAGCCCTCAGTGCTACTCTGCAATGTCCAGACCAGATCCATCAAGAGTTCCTTTTGCTTTTCCTAGGCCAGATTATGCAGCACAGTTGTCCTATGACTACTCACTGTACCCAAATTACATGGCCAATACACAATCTTCAAAGGCCAAAGCCAGATCACAGAGTGCGCCAAAGCAAAGACCTCCAGATGCATTTGAGAGGCAACCAAGCCGACCACGAAGGACATCAATGGAAGGAAGGAATCATATCCCAAGGGCTGTGAAGATGCAGAGGTCATCTTCACATGTAGGTTCCACTGCTCAAAATTACCAGTACCCTTGGTATAATATCAAGCTTGATAGATCCTCAGTTTCACTAATGGAAAGTGAGTGTGGCTCCAGCAGTACTGTGCTTACCACAAATACCAACTACTGA

Protein Analysis

467

Amino Acids

51.22

Weight (kDa)

10.03

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IQ PF00612 144 - 162 6e-06 IQ calmodulin-binding motif
DUF4005 PF13178 344 - 419 3.6e-09 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 124
Acc36I ACCTGC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 839
AciI CCGC 7 cut(s) 251, 320, 385, 398, 417, 431, 435
AclWI GGATC 2 cut(s) 1019, 1323
AcoI YGGCCR 4 cut(s) 399, 432, 952, 1110
AcsI RAATTY 2 cut(s) 444, 710
AdeI CACNNNGTG 2 cut(s) 538, 1151
AfaI GTAC 3 cut(s) 1097, 1301, 1372
AfiI CCNNNNNNNGG 2 cut(s) 669, 961
AflIII ACRYGT 1 cut(s) 1270
AgsI TTSAA 6 cut(s) 156, 425, 449, 496, 629, 1128
AhlI ACTAGT 1 cut(s) 502
AjnI CCWGG 2 cut(s) 534, 937
Alw21I GWGCWC 3 cut(s) 264, 604, 610
Alw26I GTCTC 1 cut(s) 901
Alw44I GTGCAC 1 cut(s) 260
AlwI GGATC 2 cut(s) 1019, 1323
AlwNI CAGNNNCTG 3 cut(s) 329, 341, 377
Ama87I CYCGRG 2 cut(s) 597, 603
AoxI GGCC 6 cut(s) 399, 432, 952, 1055, 1110, 1131
ApaLI GTGCAC 1 cut(s) 260
ApoI RAATTY 2 cut(s) 444, 710
ArsI GACNNNNNNTTYG 2 cut(s) 956, 988
AspA2I CCTAGG 2 cut(s) 650, 1052
AspLEI GCGC 2 cut(s) 567, 1156
AsuHPI GGTGA 5 cut(s) 105, 524, 550, 595, 891
AsuII TTCGAA 1 cut(s) 215
AvaI CYCGRG 2 cut(s) 597, 603
AvrII CCTAGG 2 cut(s) 650, 1052
BaeGI GKGCMC 1 cut(s) 264
BalI TGGCCA 2 cut(s) 954, 1112
BanII GRGCYC 2 cut(s) 604, 610
Bbv12I GWGCWC 3 cut(s) 264, 604, 610
BccI CCATC 6 cut(s) 446, 616, 626, 745, 916, 1036
BcgI CGANNNNNNTGC 2 cut(s) 668, 702
BciT130I CCWGG 2 cut(s) 536, 939
BcoDI GTCTC 1 cut(s) 901
BcuI ACTAGT 1 cut(s) 502
BfaI CTAG 4 cut(s) 503, 651, 831, 1053
BfmI CTRYAG 4 cut(s) 333, 369, 886, 946
BfuAI ACCTGC 1 cut(s) 124
BlnI CCTAGG 2 cut(s) 650, 1052
BmcAI AGTACT 1 cut(s) 1372
Bme1390I CCNGG 2 cut(s) 536, 939
BmeT110I CYCGRG 2 cut(s) 597, 603
BmiI GGNNCC 3 cut(s) 943, 1279, 1363
BmrFI CCNGG 2 cut(s) 536, 939
BmsI GCATC 3 cut(s) 334, 1165, 1242
BplI GAGNNNNNCTC 4 cut(s) 953, 985, 1346, 1378
BpmI CTGGAG 2 cut(s) 1155, 1348
Bpu10I CCTNAGC 1 cut(s) 692
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 208
BsaJI CCNNGG 5 cut(s) 309, 650, 1052, 1238, 1304
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 2 cut(s) 669, 961
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 1297
Bse3DI GCAATG 2 cut(s) 898, 1017
BseBI CCWGG 2 cut(s) 536, 939
BseDI CCNNGG 5 cut(s) 309, 650, 1052, 1238, 1304
BseGI GGATG 4 cut(s) 203, 627, 656, 760
BseLI CCNNNNNNNGG 2 cut(s) 669, 961
BseMI GCAATG 2 cut(s) 898, 1017
BseMII CTCAG 6 cut(s) 623, 706, 857, 935, 1010, 1347
BseNI ACTGG 1 cut(s) 1297
BseRI GAGGAG 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 264
BseX3I CGGCCG 1 cut(s) 432
BseYI CCCAGC 1 cut(s) 208
BsgI GTGCAG 2 cut(s) 345, 834
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 6 cut(s) 401, 434, 954, 1057, 1112, 1133
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 3 cut(s) 264, 604, 610
BsiHKCI CYCGRG 2 cut(s) 597, 603
BsiSI CCGG 1 cut(s) 663
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 669, 961
BsmAI GTCTC 1 cut(s) 901
BsmFI GGGAC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 6 cut(s) 401, 434, 954, 1057, 1112, 1133
BsoBI CYCGRG 2 cut(s) 597, 603
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 264, 604, 610
Bsp143I GATC 5 cut(s) 55, 817, 1024, 1142, 1328
BspACI CCGC 7 cut(s) 251, 320, 385, 398, 417, 431, 435
BspANI GGCC 6 cut(s) 401, 434, 954, 1057, 1112, 1133
BspCNI CTCAG 6 cut(s) 622, 705, 856, 934, 1009, 1346
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 943, 1279, 1363
BspMAI CTGCAG 3 cut(s) 337, 373, 950
BspMI ACCTGC 1 cut(s) 124
BspPI GGATC 2 cut(s) 1019, 1323
BspQI GCTCTTC 1 cut(s) 776
BspT104I TTCGAA 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 898, 1017
BsrFI RCCGGY 1 cut(s) 662
BsrI ACTGG 1 cut(s) 1297
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 5 cut(s) 309, 650, 1052, 1238, 1304
BssMI GATC 5 cut(s) 55, 817, 1024, 1142, 1328
BssT1I CCWWGG 5 cut(s) 309, 650, 1052, 1238, 1304
Bst2UI CCWGG 2 cut(s) 536, 939
Bst4CI ACNGT 4 cut(s) 643, 1074, 1095, 1375
Bst6I CTCTTC 3 cut(s) 164, 723, 776
BstAPI GCANNNNNTGC 4 cut(s) 329, 353, 368, 488
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 4 cut(s) 516, 572, 576, 946
BstDEI CTNAG 7 cut(s) 23, 609, 692, 843, 921, 996, 1333
BstEII GGTNACC 1 cut(s) 530
BstF5I GGATG 4 cut(s) 203, 627, 656, 760
BstHHI GCGC 2 cut(s) 567, 1156
BstKTI GATC 5 cut(s) 58, 820, 1027, 1145, 1331
BstMAI GTCTC 1 cut(s) 901
BstMBI GATC 5 cut(s) 55, 817, 1024, 1142, 1328
BstMCI CGRYCG 1 cut(s) 435
BstNI CCWGG 2 cut(s) 536, 939
BstNSI RCATGY 3 cut(s) 308, 574, 1274
BstPI GGTNACC 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 534, 937
BstSFI CTRYAG 4 cut(s) 333, 369, 886, 946
BstSLI GKGCMC 1 cut(s) 264
BstX2I RGATCY 2 cut(s) 1024, 1328
BstYI RGATCY 2 cut(s) 1024, 1328
BstZI CGGCCG 1 cut(s) 432
BsuRI GGCC 6 cut(s) 401, 434, 954, 1057, 1112, 1133
BtsCI GGATG 4 cut(s) 203, 627, 656, 760
BtsI GCAGTG 3 cut(s) 327, 955, 1281
BtsIMutI CAGTG 5 cut(s) 327, 955, 1004, 1091, 1281
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 4 cut(s) 516, 572, 576, 946
CaiI CAGNNNCTG 3 cut(s) 329, 341, 377
CciI TCATGA 1 cut(s) 127
CciNI GCGGCCGC 1 cut(s) 432
CfoI GCGC 2 cut(s) 567, 1156
Cfr10I RCCGGY 1 cut(s) 662
CsiI ACCWGGT 1 cut(s) 534
Csp6I GTAC 3 cut(s) 1096, 1300, 1371
CviAII CATG 8 cut(s) 128, 305, 382, 571, 724, 928, 1108, 1271
CviQI GTAC 3 cut(s) 1096, 1300, 1371
DdeI CTNAG 7 cut(s) 23, 609, 692, 843, 921, 996, 1333
DpnI GATC 5 cut(s) 57, 819, 1026, 1144, 1330
DpnII GATC 5 cut(s) 55, 817, 1024, 1142, 1328
DraIII CACNNNGTG 2 cut(s) 538, 1151
EaeI YGGCCR 4 cut(s) 399, 432, 952, 1110
EagI CGGCCG 1 cut(s) 432
Eam1104I CTCTTC 3 cut(s) 164, 723, 776
EarI CTCTTC 3 cut(s) 164, 723, 776
Ecl136II GAGCTC 2 cut(s) 602, 608
EclXI CGGCCG 1 cut(s) 432
Eco130I CCWWGG 5 cut(s) 309, 650, 1052, 1238, 1304
Eco24I GRGCYC 2 cut(s) 604, 610
Eco52I CGGCCG 1 cut(s) 432
Eco53kI GAGCTC 2 cut(s) 602, 608
Eco88I CYCGRG 2 cut(s) 597, 603
Eco91I GGTNACC 1 cut(s) 530
EcoICRI GAGCTC 2 cut(s) 602, 608
EcoO65I GGTNACC 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 534, 937
EcoT14I CCWWGG 5 cut(s) 309, 650, 1052, 1238, 1304
EcoT22I ATGCAT 1 cut(s) 1180
EcoT38I GRGCYC 2 cut(s) 604, 610
ErhI CCWWGG 5 cut(s) 309, 650, 1052, 1238, 1304
FaeI CATG 8 cut(s) 131, 308, 385, 574, 727, 931, 1111, 1274
FalI AAGNNNNNCTT 2 cut(s) 1024, 1056
FaqI GGGAC 1 cut(s) 63
FatI CATG 8 cut(s) 127, 304, 381, 570, 723, 927, 1107, 1270
FblI GTMKAC 1 cut(s) 839
FokI GGATG 4 cut(s) 190, 634, 643, 767
FriOI GRGCYC 2 cut(s) 604, 610
FspBI CTAG 4 cut(s) 503, 651, 831, 1053
GlaI GCGC 2 cut(s) 566, 1155
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 2 cut(s) 1155, 1348
HaeIII GGCC 6 cut(s) 401, 434, 954, 1057, 1112, 1133
HapII CCGG 1 cut(s) 663
HhaI GCGC 2 cut(s) 567, 1156
Hin1II CATG 8 cut(s) 131, 308, 385, 574, 727, 931, 1111, 1274
Hin6I GCGC 2 cut(s) 565, 1154
HinP1I GCGC 2 cut(s) 565, 1154
HincII GTYRAC 1 cut(s) 840
HindII GTYRAC 1 cut(s) 840
HindIII AAGCTT 2 cut(s) 28, 1319
HpaII CCGG 1 cut(s) 663
HphI GGTGA 5 cut(s) 105, 524, 550, 595, 891
Hpy166II GTNNAC 2 cut(s) 262, 840
Hpy188I TCNGA 4 cut(s) 105, 188, 612, 918
Hpy188III TCNNGA 6 cut(s) 128, 831, 923, 1017, 1032, 1172
Hpy8I GTNNAC 2 cut(s) 262, 840
HpyAV CCTTC 6 cut(s) 183, 211, 663, 1200, 1214, 1218
HpyCH4III ACNGT 4 cut(s) 643, 1074, 1095, 1375
HpyF3I CTNAG 7 cut(s) 23, 609, 692, 843, 921, 996, 1333
Hsp92II CATG 8 cut(s) 131, 308, 385, 574, 727, 931, 1111, 1274
HspAI GCGC 2 cut(s) 565, 1154
Kzo9I GATC 5 cut(s) 55, 817, 1024, 1142, 1328
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 3 cut(s) 910, 941, 1367
LweI GCATC 3 cut(s) 334, 1165, 1242
MabI ACCWGGT 1 cut(s) 534
MaeI CTAG 4 cut(s) 503, 651, 831, 1053
MaeIII GTNAC 2 cut(s) 530, 583
MalI GATC 5 cut(s) 57, 819, 1026, 1144, 1330
MboI GATC 5 cut(s) 55, 817, 1024, 1142, 1328
MboII GAAGA 8 cut(s) 181, 437, 641, 740, 793, 1116, 1257, 1261
MflI RGATCY 2 cut(s) 1024, 1328
MhlI GDGCHC 3 cut(s) 264, 604, 610
MlsI TGGCCA 2 cut(s) 954, 1112
MluCI AATT 7 cut(s) 150, 286, 444, 710, 863, 1102, 1291
MluNI TGGCCA 2 cut(s) 954, 1112
MlyI GAGTC 5 cut(s) 215, 821, 835, 913, 943
Mox20I TGGCCA 2 cut(s) 954, 1112
Mph1103I ATGCAT 1 cut(s) 1180
MscI TGGCCA 2 cut(s) 954, 1112
MseI TTAA 2 cut(s) 645, 738
Msp20I TGGCCA 2 cut(s) 954, 1112
MspA1I CMGCKG 2 cut(s) 374, 398
MspI CCGG 1 cut(s) 663
MspR9I CCNGG 2 cut(s) 536, 939
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 2 cut(s) 536, 939
NdeII GATC 5 cut(s) 55, 817, 1024, 1142, 1328
NlaIII CATG 8 cut(s) 131, 308, 385, 574, 727, 931, 1111, 1274
NlaIV GGNNCC 3 cut(s) 943, 1279, 1363
NmuCI GTSAC 2 cut(s) 530, 583
NotI GCGGCCGC 1 cut(s) 432
NsiI ATGCAT 1 cut(s) 1180
NspI RCATGY 3 cut(s) 308, 574, 1274
NspV TTCGAA 1 cut(s) 215
PaeI GCATGC 1 cut(s) 574
PaeR7I CTCGAG 2 cut(s) 597, 603
PagI TCATGA 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 124
PciI ACATGT 1 cut(s) 1270
PciSI GCTCTTC 1 cut(s) 776
PctI GAATGC 1 cut(s) 697
PfeI GAWTC 5 cut(s) 106, 136, 764, 802, 1228
PflFI GACNNNGTC 1 cut(s) 844
PfoI TCCNGGA 1 cut(s) 937
PleI GAGTC 5 cut(s) 215, 821, 835, 913, 942
PpsI GAGTC 5 cut(s) 215, 821, 835, 913, 942
PscI ACATGT 1 cut(s) 1270
Psp124BI GAGCTC 2 cut(s) 604, 610
Psp6I CCWGG 2 cut(s) 534, 937
PspEI GGTNACC 1 cut(s) 530
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 534, 937
PspN4I GGNNCC 3 cut(s) 943, 1279, 1363
PspXI VCTCGAGB 2 cut(s) 597, 603
PstI CTGCAG 3 cut(s) 337, 373, 950
PstNI CAGNNNCTG 3 cut(s) 329, 341, 377
PsuI RGATCY 2 cut(s) 1024, 1328
PsyI GACNNNGTC 1 cut(s) 844
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 3 cut(s) 1097, 1301, 1372
RsaNI GTAC 3 cut(s) 1096, 1300, 1371
SacI GAGCTC 2 cut(s) 604, 610
SalI GTCGAC 1 cut(s) 838
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 2 cut(s) 645, 738
Sau3AI GATC 5 cut(s) 55, 817, 1024, 1142, 1328
ScaI AGTACT 1 cut(s) 1372
SchI GAGTC 5 cut(s) 215, 821, 835, 913, 943
ScrFI CCNGG 2 cut(s) 536, 939
SduI GDGCHC 3 cut(s) 264, 604, 610
SexAI ACCWGGT 1 cut(s) 534
SfaNI GCATC 3 cut(s) 334, 1165, 1242
SfcI CTRYAG 4 cut(s) 333, 369, 886, 946
Sfr274I CTCGAG 2 cut(s) 597, 603
SfuI TTCGAA 1 cut(s) 215
SlaI CTCGAG 2 cut(s) 597, 603
SmlI CTYRAG 3 cut(s) 223, 597, 603
SmoI CTYRAG 3 cut(s) 223, 597, 603
SpeI ACTAGT 1 cut(s) 502
SphI GCATGC 1 cut(s) 574
Sse9I AATT 7 cut(s) 150, 286, 444, 710, 863, 1102, 1291
SsiI CCGC 7 cut(s) 251, 320, 385, 398, 417, 431, 435
SspMI CTAG 4 cut(s) 503, 651, 831, 1053
SstI GAGCTC 2 cut(s) 604, 610
StyD4I CCNGG 2 cut(s) 534, 937
StyI CCWWGG 5 cut(s) 309, 650, 1052, 1238, 1304
TaaI ACNGT 4 cut(s) 643, 1074, 1095, 1375
TaqI TCGA 6 cut(s) 215, 598, 604, 800, 820, 839
TasI AATT 7 cut(s) 150, 286, 444, 710, 863, 1102, 1291
TatI WGTACW 1 cut(s) 1370
TauI GCSGC 6 cut(s) 323, 388, 401, 419, 434, 437
TfiI GAWTC 5 cut(s) 106, 136, 764, 802, 1228
Tru1I TTAA 2 cut(s) 645, 738
Tru9I TTAA 2 cut(s) 645, 738
TscAI CASTG 5 cut(s) 334, 955, 1004, 1098, 1288
TseFI GTSAC 2 cut(s) 530, 583
Tsp45I GTSAC 2 cut(s) 530, 583
TspDTI ATGAA 1 cut(s) 723
TspGWI ACGGA 1 cut(s) 449
TspRI CASTG 5 cut(s) 334, 955, 1004, 1098, 1288
Tth111I GACNNNGTC 1 cut(s) 844
VneI GTGCAC 1 cut(s) 260
XapI RAATTY 2 cut(s) 444, 710
XbaI TCTAGA 1 cut(s) 830
XceI RCATGY 3 cut(s) 308, 574, 1274
XhoI CTCGAG 2 cut(s) 597, 603
XmaJI CCTAGG 2 cut(s) 650, 1052
XmiI GTMKAC 1 cut(s) 839
XspI CTAG 4 cut(s) 503, 651, 831, 1053
ZrmI AGTACT 1 cut(s) 1372
Zsp2I ATGCAT 1 cut(s) 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.