Rorug03G0310600

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010897
Physical Location & Seq
Reverse (-)
33127431 .. 33128193
763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0310600.1

Sequence Viewer

Length: 552 bp
ATGGCTGGCATTGTGAGGGTTGCCGTGCTGCCGGACCCAGAATCTGAGGCTCGATCTCGCTACCCTGTTTCGGGTGAGGCTGTGTCCAGAGATGGGTTTAATTTGGAGTATAAGTGGGAAGCAAAAGGGAACATTGATGGTGAGCTTGTTGGTGTTGTAGGGGACTCGTGGGTGCTGAGGCCAGAGCCTGTTTCGGTTACTTGCCATTCGATTAAGGGTGTTAAGGAAGAGTCGAAAAGTGAGATCATGGCTGCATTGTGCCAAGATGTGGAGGGGAAGTTGGTTGCCAGGGCGGCGAGGCTGGCTTTGATTGCTGAGGAGGTGGGTTATGTTGATGTGATTCTGGCGATTGAGAAGTACTTAAGGGATGCAATTGAGCCATGGTTTTGGATGGGACTTTTGGTGGGAATGGGTTTTTGTATGAGAGTGAATGGGGTGGCATTGTTACTAAACAAGGATCATTGGATTCTGGTGCAGATGTCGGGTTTGGAGTTTACAATTGAAAGTACTAGAATGGCCAGGGGGGGGGGGGTGGGGGTGGGCTGTGAATAG

Protein Analysis

183

Amino Acids

19.95

Weight (kDa)

4.99

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14750 AT4G14750 AT4G14750
fragaria_vesca FvH4_4g01000 FvH4_4g01000
malus_domestica MD13G1198300.v1.1 MD16G1198400.v1.1
prunus_persica Prupe.1G020000_v2.0.a1
pyrus_communis pycom13g17210 pycom16g16730
rosa_chinensis RchiOBHm_Chr4g0387551
rosa_laevigata RLG00000010112
rosa_multiflora Rmu_sc0007248.1_g000016
rosa_roxburghii Rroxscaffold_5G00334230
rosa_rugosa Rorug03G0310600
rosa_samantha Rh4AG016600 Rh4BG011500 Rh4CG017800 Rh4DG012400
rosa_wichuraiana Rw4G001060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 268
AciI CCGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 516
AfaI GTAC 2 cut(s) 359, 508
AfiI CCNNNNNNNGG 5 cut(s) 70, 71, 93, 268, 525
AflII CTTAAG 1 cut(s) 361
AgsI TTSAA 1 cut(s) 503
AjnI CCWGG 2 cut(s) 287, 518
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AlwI GGATC 1 cut(s) 465
AlwNI CAGNNNCTG 2 cut(s) 44, 188
AoxI GGCC 2 cut(s) 179, 516
ApeKI GCWGC 2 cut(s) 28, 251
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 86, 152
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 518
BauI CACGAG 1 cut(s) 166
BbvCI CCTCAGC 2 cut(s) 176, 315
BbvI GCAGC 2 cut(s) 15, 238
BccI CCATC 3 cut(s) 86, 131, 385
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 2 cut(s) 289, 520
BfaI CTAG 1 cut(s) 510
BfrI CTTAAG 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 3 cut(s) 29, 252, 294
BlsI GCNGC 3 cut(s) 30, 253, 295
BmcAI AGTACT 2 cut(s) 359, 508
Bme1390I CCNGG 2 cut(s) 289, 520
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 289, 520
BmsI GCATC 1 cut(s) 358
Bpu10I CCTNAGC 2 cut(s) 176, 315
BsaJI CCNNGG 3 cut(s) 288, 380, 519
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 263, 293
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 71, 93, 268, 525
BseBI CCWGG 2 cut(s) 289, 520
BseDI CCNNGG 3 cut(s) 288, 380, 519
BseGI GGATG 2 cut(s) 373, 396
BseLI CCNNNNNNNGG 5 cut(s) 70, 71, 93, 268, 525
BseMII CTCAG 3 cut(s) 36, 167, 306
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 15, 238
BsgI GTGCAG 1 cut(s) 494
BshFI GGCC 2 cut(s) 181, 518
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 2 cut(s) 176, 408
BslI CCNNNNNNNGG 5 cut(s) 70, 71, 93, 268, 525
BsmFI GGGAC 2 cut(s) 176, 408
BsnI GGCC 2 cut(s) 181, 518
Bsp143I GATC 3 cut(s) 53, 243, 457
Bsp19I CCATGG 1 cut(s) 380
BspACI CCGC 1 cut(s) 293
BspANI GGCC 2 cut(s) 181, 518
BspCNI CTCAG 3 cut(s) 37, 168, 307
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 288, 380, 519
BssMI GATC 3 cut(s) 53, 243, 457
BssSI CACGAG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 289, 520
Bst6I CTCTTC 1 cut(s) 222
BstAFI CTTAAG 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 7, 303
BstDEI CTNAG 3 cut(s) 45, 176, 315
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 2 cut(s) 373, 396
BstKTI GATC 3 cut(s) 56, 246, 460
BstMBI GATC 3 cut(s) 53, 243, 457
BstMWI GCNNNNNNNGC 3 cut(s) 293, 302, 311
BstNI CCWGG 2 cut(s) 289, 520
BstSCI CCNGG 2 cut(s) 287, 518
BstV1I GCAGC 2 cut(s) 15, 238
BstXI CCANNNNNNTGG 1 cut(s) 387
BsuRI GGCC 2 cut(s) 181, 518
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 2 cut(s) 373, 396
Cac8I GCNNGC 2 cut(s) 7, 303
CaiI CAGNNNCTG 2 cut(s) 44, 188
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 358, 507
CviAII CATG 2 cut(s) 247, 381
CviQI GTAC 2 cut(s) 358, 507
DdeI CTNAG 3 cut(s) 45, 176, 315
DpnI GATC 3 cut(s) 55, 245, 459
DpnII GATC 3 cut(s) 53, 243, 457
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 287, 518
EcoT14I CCWWGG 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 2 cut(s) 250, 384
FaiI YATR 5 cut(s) 111, 248, 330, 382, 422
FaqI GGGAC 2 cut(s) 176, 408
FatI CATG 2 cut(s) 246, 380
Fnu4HI GCNGC 3 cut(s) 29, 252, 294
FokI GGATG 2 cut(s) 380, 403
Fsp4HI GCNGC 3 cut(s) 29, 252, 294
FspBI CTAG 1 cut(s) 510
GluI GCNGC 3 cut(s) 29, 252, 294
HaeIII GGCC 2 cut(s) 181, 518
HapII CCGG 1 cut(s) 32
Hin1II CATG 2 cut(s) 250, 384
HinfI GANTC 5 cut(s) 41, 164, 230, 340, 466
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 86, 152
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 87
Hpy8I GTNNAC 1 cut(s) 495
HpyCH4V TGCA 3 cut(s) 254, 371, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 302, 311
HpyF3I CTNAG 3 cut(s) 45, 176, 315
Hsp92II CATG 2 cut(s) 250, 384
Kzo9I GATC 3 cut(s) 53, 243, 457
Lsp1109I GCAGC 2 cut(s) 15, 238
LweI GCATC 1 cut(s) 358
MaeI CTAG 1 cut(s) 510
MaeIII GTNAC 2 cut(s) 196, 444
MalI GATC 3 cut(s) 55, 245, 459
MboI GATC 3 cut(s) 53, 243, 457
MboII GAAGA 1 cut(s) 239
MfeI CAATTG 2 cut(s) 372, 498
MlsI TGGCCA 1 cut(s) 518
MluCI AATT 3 cut(s) 100, 372, 498
MluNI TGGCCA 1 cut(s) 518
MlyI GAGTC 2 cut(s) 158, 239
MnlI CCTC 8 cut(s) 9, 40, 70, 171, 265, 291, 310, 313
Mox20I TGGCCA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 518
MseI TTAA 4 cut(s) 99, 213, 222, 362
Msp20I TGGCCA 1 cut(s) 518
MspCI CTTAAG 1 cut(s) 361
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 289, 520
MunI CAATTG 2 cut(s) 372, 498
MvaI CCWGG 2 cut(s) 289, 520
MwoI GCNNNNNNNGC 3 cut(s) 293, 302, 311
NcoI CCATGG 1 cut(s) 380
NdeII GATC 3 cut(s) 53, 243, 457
NlaIII CATG 2 cut(s) 250, 384
NlaIV GGNNCC 1 cut(s) 36
PfeI GAWTC 3 cut(s) 41, 340, 466
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 3 cut(s) 30, 253, 295
PleI GAGTC 2 cut(s) 158, 238
PpsI GAGTC 2 cut(s) 158, 238
Psp6I CCWGG 2 cut(s) 287, 518
PspGI CCWGG 2 cut(s) 287, 518
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 34
PstNI CAGNNNCTG 2 cut(s) 44, 188
RsaI GTAC 2 cut(s) 359, 508
RsaNI GTAC 2 cut(s) 358, 507
SaqAI TTAA 4 cut(s) 99, 213, 222, 362
SatI GCNGC 3 cut(s) 29, 252, 294
Sau3AI GATC 3 cut(s) 53, 243, 457
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 2 cut(s) 359, 508
SchI GAGTC 2 cut(s) 158, 239
ScrFI CCNGG 2 cut(s) 289, 520
SetI ASST 2 cut(s) 147, 324
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 3 cut(s) 100, 372, 498
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 287, 518
StyI CCWWGG 1 cut(s) 380
TaqI TCGA 3 cut(s) 52, 209, 233
TasI AATT 3 cut(s) 100, 372, 498
TatI WGTACW 2 cut(s) 357, 506
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 3 cut(s) 41, 340, 466
Tru1I TTAA 4 cut(s) 99, 213, 222, 362
Tru9I TTAA 4 cut(s) 99, 213, 222, 362
TseI GCWGC 2 cut(s) 28, 251
Van91I CCANNNNNTGG 1 cut(s) 268
Vha464I CTTAAG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 34
XspI CTAG 1 cut(s) 510
ZrmI AGTACT 2 cut(s) 359, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.