Rh4DG012400

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010897
Physical Location & Seq
Reverse (-)
1990656 .. 1992834
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG012400.1

Sequence Viewer

Length: 1455 bp
ATGGGAAAGACAGGCAAATGGCTTAGAAGCTTCTTGACAGGAAAGAAAGACAGAGATCACAAGGACAAGGAAAAATGTCCAACTACTACTACTACCACCACCACCACTAATCAGAATTGCTCACCTGCCACTACTCACGATCAGAATCCCACCACTCCAAATTCAACACCAAAGGAGAAGAGGAGGTGGAGTTTCAGAAGGTCATCTGCCACATCCCCAGCTTCAAAGGACTCAAATGTTGTAGAAGCATCACCAACCACACCACCACCTGTGCACTCAACATTGGATTTCTCTGATAATTATGAGCAGAAAAAACATGCCTTGGCAGTGGCAGCAGCCACGGCTGCTGTTGCTGATGCAACCGCAGCTGCTGCACAAGCTGCAGCTGCTGTCATGCGGCTGACAGCAGCTGCCAATGAGAAAACTGCCGCCATTGAAGAGGCGGCCGCCATCAAAATTCAATCCGTATTTCGTTCTTATCTGGCAAGAAAAGCATTGTGTGCATTGAAAGGACTAGTAAAGTTGCAGGCATTGGTAAGGGGTCACCTAGTGAGAAAACAGGCCAAAGCCACGCTGCGGTGCATGCAGGCATTGGTGACAGCACAGGCTCGAGCTCGAGCTCAGAGGATTCGGATGGTTGAAGATGGAAATACTGTTAATCCTAGGCCATCCACCGGCAGAAGGTCTTTACAGGAAAATCGGCTCAGGCATTCTTATAATGAATTTGATAGAGGCATGGAAGAGAACATTAAGATTGTGGAGATGGATCTTGGGGAATCAAAAGGAAATGTGAAGGGCAGAAACAGCTACTCGAATCACACACAAGCCGATCGACCAGACTCTAGATTTTCGACTCAGTCTGCACCAAATCATCAACCATACATAAAACCAGACAACTGCAGCAATGTCTCACCAGCTCCATCAGCTCTGACTCAGGACATGATGAGTCCAGGAGCCTGCAGTGGCCATTTCGAGGACTTTTCCTTCGGAACAGCACAAAGCAGCCCCCAGTGCTACTCTGCAATGTCCAAACCAGATCCATCAAGAGTTCCTTTCGCTTTTCCGAGGCCAGATTATGCAGAACAATTGTCCTATGACTACCCATTGTACCCAAATTACATGGCCAATACACAATCTTCAAAGGCCAAAGCCAGATCACAGAGTGCACCAAAGCAAAGACCTCCAGATGCATTTGAGAGACAACCAAGCCGACCGCGAAGGACATCAATGGAAGGAAGGAATCATATCCCAAGGTCTGTGAAGATGCAGAGGTCATCTTCACATGTAGGTTCCACTGCTCAAAATTACCAGTACCCTTGGTATAATATCAAGCTGGATAGATCCTCAGTTTCACTAATGGAAAGTGAGTGTGGCTCCAGCAGTACTGTGCTCACCACAAATACCAACTACTGCAAATCTCTTGTTGCATTTAATGGACATGGAAGTAGGTACTAA

Protein Analysis

484

Amino Acids

53.34

Weight (kDa)

9.81

Isoelectric Point (pI)

59.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IQ PF00612 148 - 166 6.3e-06 IQ calmodulin-binding motif
DUF4005 PF13178 348 - 423 1.1e-11 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14750 AT4G14750 AT4G14750
fragaria_vesca FvH4_4g01000 FvH4_4g01000
malus_domestica MD13G1198300.v1.1 MD16G1198400.v1.1
prunus_persica Prupe.1G020000_v2.0.a1
pyrus_communis pycom13g17210 pycom16g16730
rosa_chinensis RchiOBHm_Chr4g0387551
rosa_laevigata RLG00000010112
rosa_multiflora Rmu_sc0007248.1_g000016
rosa_roxburghii Rroxscaffold_5G00334230
rosa_rugosa Rorug03G0310600
rosa_samantha Rh4AG016600 Rh4BG011500 Rh4CG017800 Rh4DG012400
rosa_wichuraiana Rw4G001060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 133
AccII CGCG 1 cut(s) 1216
AciI CCGC 7 cut(s) 363, 397, 429, 443, 447, 577, 1214
AclWI GGATC 3 cut(s) 774, 1031, 1335
AcoI YGGCCR 3 cut(s) 444, 964, 1122
AcsI RAATTY 3 cut(s) 160, 456, 722
AdeI CACNNNGTG 2 cut(s) 550, 1163
AfaI GTAC 4 cut(s) 1109, 1313, 1384, 1451
AfiI CCNNNNNNNGG 4 cut(s) 576, 674, 681, 973
AflIII ACRYGT 1 cut(s) 1282
AgsI TTSAA 7 cut(s) 165, 225, 437, 461, 508, 641, 1140
AhlI ACTAGT 1 cut(s) 514
AjnI CCWGG 1 cut(s) 949
Alw21I GWGCWC 5 cut(s) 276, 616, 622, 1168, 1392
Alw26I GTCTC 2 cut(s) 913, 1192
Alw44I GTGCAC 2 cut(s) 272, 1164
AlwI GGATC 3 cut(s) 774, 1031, 1335
AlwNI CAGNNNCTG 3 cut(s) 371, 389, 410
Ama87I CYCGRG 2 cut(s) 609, 615
AoxI GGCC 7 cut(s) 444, 561, 665, 964, 1067, 1122, 1143
ApaLI GTGCAC 2 cut(s) 272, 1164
ApoI RAATTY 3 cut(s) 160, 456, 722
ArsI GACNNNNNNTTYG 2 cut(s) 968, 1000
AspA2I CCTAGG 1 cut(s) 662
AsuHPI GGTGA 6 cut(s) 114, 243, 536, 607, 903, 1384
AvaI CYCGRG 2 cut(s) 609, 615
AvrII CCTAGG 1 cut(s) 662
BaeGI GKGCMC 2 cut(s) 276, 1168
BalI TGGCCA 2 cut(s) 966, 1124
BanII GRGCYC 2 cut(s) 616, 622
Bbv12I GWGCWC 5 cut(s) 276, 616, 622, 1168, 1392
BccI CCATC 7 cut(s) 458, 628, 638, 676, 757, 928, 1048
BceAI ACGGC 1 cut(s) 357
BciT130I CCWGG 1 cut(s) 951
BcoDI GTCTC 2 cut(s) 913, 1192
BcuI ACTAGT 1 cut(s) 514
BfaI CTAG 4 cut(s) 515, 548, 663, 843
BfmI CTRYAG 3 cut(s) 381, 898, 958
BfuAI ACCTGC 1 cut(s) 133
BlnI CCTAGG 1 cut(s) 662
BmcAI AGTACT 1 cut(s) 1384
Bme1390I CCNGG 1 cut(s) 951
BmeT110I CYCGRG 2 cut(s) 609, 615
BmiI GGNNCC 3 cut(s) 955, 1291, 1375
BmrFI CCNGG 1 cut(s) 951
BmrI ACTGGG 1 cut(s) 1003
BmsI GCATC 4 cut(s) 257, 346, 1177, 1254
BmuI ACTGGG 1 cut(s) 1003
BplI GAGNNNNNCTC 2 cut(s) 1358, 1390
BpmI CTGGAG 2 cut(s) 1167, 1360
Bpu10I CCTNAGC 1 cut(s) 704
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 6 cut(s) 321, 339, 662, 1064, 1250, 1316
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 4 cut(s) 576, 674, 681, 973
Bse118I RCCGGY 1 cut(s) 674
Bse1I ACTGG 2 cut(s) 1009, 1309
Bse3DI GCAATG 2 cut(s) 910, 1029
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 1 cut(s) 951
BseDI CCNNGG 6 cut(s) 321, 339, 662, 1064, 1250, 1316
BseGI GGATG 3 cut(s) 212, 639, 668
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 4 cut(s) 576, 674, 681, 973
BseMI GCAATG 2 cut(s) 910, 1029
BseMII CTCAG 5 cut(s) 635, 718, 869, 947, 1359
BseNI ACTGG 2 cut(s) 1009, 1309
BseRI GAGGAG 1 cut(s) 196
BseSI GKGCMC 2 cut(s) 276, 1168
BseX3I CGGCCG 1 cut(s) 444
BseYI CCCAGC 1 cut(s) 217
BsgI GTGCAG 2 cut(s) 357, 846
Bsh1236I CGCG 1 cut(s) 1216
Bsh1285I CGRYCG 3 cut(s) 447, 832, 1214
BshFI GGCC 7 cut(s) 446, 563, 667, 966, 1069, 1124, 1145
BsiEI CGRYCG 3 cut(s) 447, 832, 1214
BsiHKAI GWGCWC 5 cut(s) 276, 616, 622, 1168, 1392
BsiHKCI CYCGRG 2 cut(s) 609, 615
BsiSI CCGG 1 cut(s) 675
BslI CCNNNNNNNGG 4 cut(s) 576, 674, 681, 973
BsmAI GTCTC 2 cut(s) 913, 1192
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 7 cut(s) 446, 563, 667, 966, 1069, 1124, 1145
BsoBI CYCGRG 2 cut(s) 609, 615
Bsp1286I GDGCHC 5 cut(s) 276, 616, 622, 1168, 1392
Bsp143I GATC 7 cut(s) 55, 139, 766, 829, 1036, 1154, 1340
BspACI CCGC 7 cut(s) 363, 397, 429, 443, 447, 577, 1214
BspANI GGCC 7 cut(s) 446, 563, 667, 966, 1069, 1124, 1145
BspCNI CTCAG 5 cut(s) 634, 717, 868, 946, 1358
BspFNI CGCG 1 cut(s) 1216
BspLI GGNNCC 3 cut(s) 955, 1291, 1375
BspMAI CTGCAG 3 cut(s) 385, 902, 962
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 3 cut(s) 774, 1031, 1335
BsrDI GCAATG 2 cut(s) 910, 1029
BsrFI RCCGGY 1 cut(s) 674
BsrI ACTGG 2 cut(s) 1009, 1309
BssAI RCCGGY 1 cut(s) 674
BssECI CCNNGG 6 cut(s) 321, 339, 662, 1064, 1250, 1316
BssMI GATC 7 cut(s) 55, 139, 766, 829, 1036, 1154, 1340
BssT1I CCWWGG 4 cut(s) 321, 662, 1250, 1316
Bst2UI CCWGG 1 cut(s) 951
Bst4CI ACNGT 2 cut(s) 655, 1387
Bst6I CTCTTC 3 cut(s) 173, 432, 735
BstAPI GCANNNNNTGC 3 cut(s) 371, 380, 500
BstC8I GCNNGC 4 cut(s) 528, 584, 588, 958
BstDEI CTNAG 6 cut(s) 23, 621, 704, 855, 933, 1345
BstDSI CCRYGG 1 cut(s) 339
BstEII GGTNACC 1 cut(s) 542
BstF5I GGATG 3 cut(s) 212, 639, 668
BstFNI CGCG 1 cut(s) 1216
BstKTI GATC 7 cut(s) 58, 142, 769, 832, 1039, 1157, 1343
BstMAI GTCTC 2 cut(s) 913, 1192
BstMBI GATC 7 cut(s) 55, 139, 766, 829, 1036, 1154, 1340
BstMCI CGRYCG 3 cut(s) 447, 832, 1214
BstNI CCWGG 1 cut(s) 951
BstNSI RCATGY 3 cut(s) 320, 586, 1286
BstPI GGTNACC 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 949
BstSFI CTRYAG 3 cut(s) 381, 898, 958
BstSLI GKGCMC 2 cut(s) 276, 1168
BstUI CGCG 1 cut(s) 1216
BstX2I RGATCY 3 cut(s) 766, 1036, 1340
BstYI RGATCY 3 cut(s) 766, 1036, 1340
BstZI CGGCCG 1 cut(s) 444
BsuRI GGCC 7 cut(s) 446, 563, 667, 966, 1069, 1124, 1145
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 3 cut(s) 212, 639, 668
BtsI GCAGTG 3 cut(s) 333, 967, 1293
BtsIMutI CAGTG 4 cut(s) 333, 967, 1016, 1293
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 4 cut(s) 528, 584, 588, 958
CaiI CAGNNNCTG 3 cut(s) 371, 389, 410
CciNI GCGGCCGC 1 cut(s) 444
Cfr10I RCCGGY 1 cut(s) 674
Csp6I GTAC 4 cut(s) 1108, 1312, 1383, 1450
CviAII CATG 8 cut(s) 317, 394, 583, 736, 940, 1120, 1283, 1439
CviQI GTAC 4 cut(s) 1108, 1312, 1383, 1450
DdeI CTNAG 6 cut(s) 23, 621, 704, 855, 933, 1345
DpnI GATC 7 cut(s) 57, 141, 768, 831, 1038, 1156, 1342
DpnII GATC 7 cut(s) 55, 139, 766, 829, 1036, 1154, 1340
DraIII CACNNNGTG 2 cut(s) 550, 1163
EaeI YGGCCR 3 cut(s) 444, 964, 1122
EagI CGGCCG 1 cut(s) 444
Eam1104I CTCTTC 3 cut(s) 173, 432, 735
EarI CTCTTC 3 cut(s) 173, 432, 735
Ecl136II GAGCTC 2 cut(s) 614, 620
EclXI CGGCCG 1 cut(s) 444
Eco130I CCWWGG 4 cut(s) 321, 662, 1250, 1316
Eco24I GRGCYC 2 cut(s) 616, 622
Eco52I CGGCCG 1 cut(s) 444
Eco53kI GAGCTC 2 cut(s) 614, 620
Eco88I CYCGRG 2 cut(s) 609, 615
Eco91I GGTNACC 1 cut(s) 542
EcoICRI GAGCTC 2 cut(s) 614, 620
EcoO65I GGTNACC 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 949
EcoT14I CCWWGG 4 cut(s) 321, 662, 1250, 1316
EcoT22I ATGCAT 1 cut(s) 1192
EcoT38I GRGCYC 2 cut(s) 616, 622
ErhI CCWWGG 4 cut(s) 321, 662, 1250, 1316
FaeI CATG 8 cut(s) 320, 397, 586, 739, 943, 1123, 1286, 1442
FalI AAGNNNNNCTT 2 cut(s) 1036, 1068
FatI CATG 8 cut(s) 316, 393, 582, 735, 939, 1119, 1282, 1438
FokI GGATG 3 cut(s) 199, 646, 655
FriOI GRGCYC 2 cut(s) 616, 622
FspBI CTAG 4 cut(s) 515, 548, 663, 843
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 2 cut(s) 1167, 1360
HaeIII GGCC 7 cut(s) 446, 563, 667, 966, 1069, 1124, 1145
HapII CCGG 1 cut(s) 675
Hin1II CATG 8 cut(s) 320, 397, 586, 739, 943, 1123, 1286, 1442
HindIII AAGCTT 1 cut(s) 28
HpaII CCGG 1 cut(s) 675
HphI GGTGA 6 cut(s) 114, 243, 536, 607, 903, 1384
Hpy166II GTNNAC 2 cut(s) 274, 1166
Hpy188I TCNGA 9 cut(s) 114, 144, 197, 295, 624, 633, 930, 989, 1065
Hpy188III TCNNGA 6 cut(s) 34, 137, 843, 935, 1044, 1184
Hpy8I GTNNAC 2 cut(s) 274, 1166
HpyAV CCTTC 7 cut(s) 192, 675, 787, 994, 1212, 1226, 1230
HpyCH4III ACNGT 2 cut(s) 655, 1387
HpyF3I CTNAG 6 cut(s) 23, 621, 704, 855, 933, 1345
Hsp92II CATG 8 cut(s) 320, 397, 586, 739, 943, 1123, 1286, 1442
Kzo9I GATC 7 cut(s) 55, 139, 766, 829, 1036, 1154, 1340
LmnI GCTCC 3 cut(s) 922, 953, 1379
LweI GCATC 4 cut(s) 257, 346, 1177, 1254
MaeI CTAG 4 cut(s) 515, 548, 663, 843
MaeIII GTNAC 2 cut(s) 542, 595
MalI GATC 7 cut(s) 57, 141, 768, 831, 1038, 1156, 1342
MboI GATC 7 cut(s) 55, 139, 766, 829, 1036, 1154, 1340
MboII GAAGA 7 cut(s) 190, 449, 653, 752, 1128, 1269, 1273
MfeI CAATTG 1 cut(s) 1085
MflI RGATCY 3 cut(s) 766, 1036, 1340
MhlI GDGCHC 5 cut(s) 276, 616, 622, 1168, 1392
MlsI TGGCCA 2 cut(s) 966, 1124
MluCI AATT 8 cut(s) 115, 160, 298, 456, 722, 1085, 1114, 1303
MluNI TGGCCA 2 cut(s) 966, 1124
MlyI GAGTC 5 cut(s) 224, 833, 847, 925, 955
MmeI TCCRAC 1 cut(s) 104
Mox20I TGGCCA 2 cut(s) 966, 1124
Mph1103I ATGCAT 1 cut(s) 1192
MscI TGGCCA 2 cut(s) 966, 1124
MseI TTAA 3 cut(s) 657, 750, 1431
Msp20I TGGCCA 2 cut(s) 966, 1124
MspA1I CMGCKG 3 cut(s) 368, 386, 410
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 1 cut(s) 951
MunI CAATTG 1 cut(s) 1085
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 1 cut(s) 951
MvnI CGCG 1 cut(s) 1216
NdeII GATC 7 cut(s) 55, 139, 766, 829, 1036, 1154, 1340
NlaIII CATG 8 cut(s) 320, 397, 586, 739, 943, 1123, 1286, 1442
NlaIV GGNNCC 3 cut(s) 955, 1291, 1375
NmuCI GTSAC 2 cut(s) 542, 595
NotI GCGGCCGC 1 cut(s) 444
NsiI ATGCAT 1 cut(s) 1192
NspI RCATGY 3 cut(s) 320, 586, 1286
PaeI GCATGC 1 cut(s) 586
PaeR7I CTCGAG 2 cut(s) 609, 615
PaqCI CACCTGC 1 cut(s) 133
PciI ACATGT 1 cut(s) 1282
PctI GAATGC 1 cut(s) 709
PfeI GAWTC 5 cut(s) 145, 628, 776, 814, 1240
PflFI GACNNNGTC 1 cut(s) 856
PfoI TCCNGGA 1 cut(s) 949
Ple19I CGATCG 1 cut(s) 832
PleI GAGTC 5 cut(s) 224, 833, 847, 925, 954
PpsI GAGTC 5 cut(s) 224, 833, 847, 925, 954
PscI ACATGT 1 cut(s) 1282
PsiI TTATAA 1 cut(s) 717
Psp124BI GAGCTC 2 cut(s) 616, 622
Psp6I CCWGG 1 cut(s) 949
PspEI GGTNACC 1 cut(s) 542
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 1 cut(s) 949
PspN4I GGNNCC 3 cut(s) 955, 1291, 1375
PspXI VCTCGAGB 2 cut(s) 609, 615
PstI CTGCAG 3 cut(s) 385, 902, 962
PstNI CAGNNNCTG 3 cut(s) 371, 389, 410
PsuI RGATCY 3 cut(s) 766, 1036, 1340
PsyI GACNNNGTC 1 cut(s) 856
PvuI CGATCG 1 cut(s) 832
PvuII CAGCTG 3 cut(s) 368, 386, 410
RsaI GTAC 4 cut(s) 1109, 1313, 1384, 1451
RsaNI GTAC 4 cut(s) 1108, 1312, 1383, 1450
SacI GAGCTC 2 cut(s) 616, 622
SaqAI TTAA 3 cut(s) 657, 750, 1431
Sau3AI GATC 7 cut(s) 55, 139, 766, 829, 1036, 1154, 1340
ScaI AGTACT 1 cut(s) 1384
SchI GAGTC 5 cut(s) 224, 833, 847, 925, 955
ScrFI CCNGG 1 cut(s) 951
SduI GDGCHC 5 cut(s) 276, 616, 622, 1168, 1392
SfaNI GCATC 4 cut(s) 257, 346, 1177, 1254
SfcI CTRYAG 3 cut(s) 381, 898, 958
Sfr274I CTCGAG 2 cut(s) 609, 615
SlaI CTCGAG 2 cut(s) 609, 615
SmlI CTYRAG 2 cut(s) 609, 615
SmoI CTYRAG 2 cut(s) 609, 615
SpeI ACTAGT 1 cut(s) 514
SphI GCATGC 1 cut(s) 586
Sse9I AATT 8 cut(s) 115, 160, 298, 456, 722, 1085, 1114, 1303
SsiI CCGC 7 cut(s) 363, 397, 429, 443, 447, 577, 1214
SspMI CTAG 4 cut(s) 515, 548, 663, 843
SstI GAGCTC 2 cut(s) 616, 622
StyD4I CCNGG 1 cut(s) 949
StyI CCWWGG 4 cut(s) 321, 662, 1250, 1316
TaaI ACNGT 2 cut(s) 655, 1387
TaqI TCGA 6 cut(s) 610, 616, 812, 832, 851, 972
TasI AATT 8 cut(s) 115, 160, 298, 456, 722, 1085, 1114, 1303
TatI WGTACW 1 cut(s) 1382
TauI GCSGC 4 cut(s) 400, 431, 446, 449
TfiI GAWTC 5 cut(s) 145, 628, 776, 814, 1240
Tru1I TTAA 3 cut(s) 657, 750, 1431
Tru9I TTAA 3 cut(s) 657, 750, 1431
TscAI CASTG 4 cut(s) 333, 967, 1016, 1300
TseFI GTSAC 2 cut(s) 542, 595
Tsp45I GTSAC 2 cut(s) 542, 595
TspDTI ATGAA 1 cut(s) 735
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 4 cut(s) 333, 967, 1016, 1300
Tth111I GACNNNGTC 1 cut(s) 856
VneI GTGCAC 2 cut(s) 272, 1164
XapI RAATTY 3 cut(s) 160, 456, 722
XbaI TCTAGA 1 cut(s) 842
XceI RCATGY 3 cut(s) 320, 586, 1286
XhoI CTCGAG 2 cut(s) 609, 615
XmaJI CCTAGG 1 cut(s) 662
XspI CTAG 4 cut(s) 515, 548, 663, 843
ZrmI AGTACT 1 cut(s) 1384
Zsp2I ATGCAT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.