U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g01981 |
| malus_domestica | MD13G1203200.v1.1 MD16G1204600.v1.1 |
| prunus_persica | Prupe.1G025700_v2.0.a1 Prupe.1G025700_v2.0.a1 Prupe.1G025700_v2.0.a1 |
| pyrus_communis | pycom13g17650 pycom16g17270 |
| rosa_chinensis | RchiOBHm_Chr4g0388951 |
| rosa_laevigata | RLG00000010004 |
| rosa_multiflora | Rmu_sc0001395.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00335270 |
| rosa_rugosa | Rorug03G0321600 |
| rosa_samantha | Rh4AG026100 Rh4BG019300 Rh4CG029100 Rh4DG019800 |
| rosa_wichuraiana | Rw0G003670 Rw4G001880 Rw4G001920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 285, 550 |
| AccI | GTMKAC | 1 cut(s) | 1605 |
| AccIII | TCCGGA | 1 cut(s) | 1667 |
| AciI | CCGC | 3 cut(s) | 937, 2604, 2970 |
| AclI | AACGTT | 1 cut(s) | 2995 |
| AclWI | GGATC | 4 cut(s) | 1266, 1687, 2381, 2902 |
| AcsI | RAATTY | 7 cut(s) | 428, 456, 1087, 1370, 1455, 1612, 2107 |
| AcuI | CTGAAG | 3 cut(s) | 387, 657, 2183 |
| AdeI | CACNNNGTG | 1 cut(s) | 298 |
| AfaI | GTAC | 6 cut(s) | 144, 251, 309, 767, 844, 2223 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 295, 1149, 1254, 1255, 1417, 1630, 2559, 2600, 2753 |
| AflII | CTTAAG | 1 cut(s) | 1057 |
| AflIII | ACRYGT | 1 cut(s) | 727 |
| AgeI | ACCGGT | 1 cut(s) | 2552 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2520 |
| AhlI | ACTAGT | 1 cut(s) | 2927 |
| AjnI | CCWGG | 5 cut(s) | 51, 501, 932, 1249, 3025 |
| Alw21I | GWGCWC | 3 cut(s) | 265, 1585, 2371 |
| Alw26I | GTCTC | 5 cut(s) | 318, 450, 1031, 2639, 2795 |
| AlwI | GGATC | 4 cut(s) | 1266, 1687, 2381, 2902 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2474 |
| Ama87I | CYCGRG | 4 cut(s) | 675, 1148, 1288, 2198 |
| Aor13HI | TCCGGA | 1 cut(s) | 1667 |
| AoxI | GGCC | 8 cut(s) | 228, 1053, 1213, 1421, 1550, 1967, 2781, 2967 |
| ApoI | RAATTY | 7 cut(s) | 428, 456, 1087, 1370, 1455, 1612, 2107 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 491, 523 |
| AsiGI | ACCGGT | 1 cut(s) | 2552 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1469, 2157, 2709 |
| AspLEI | GCGC | 4 cut(s) | 1800, 2407, 2412, 2913 |
| AspS9I | GGNCC | 5 cut(s) | 1152, 1421, 1550, 2056, 2582 |
| AsuC2I | CCSGG | 2 cut(s) | 2335, 2594 |
| AsuHPI | GGTGA | 7 cut(s) | 310, 406, 1183, 1399, 1906, 2228, 2693 |
| AsuII | TTCGAA | 1 cut(s) | 3002 |
| AsuNHI | GCTAGC | 1 cut(s) | 583 |
| AvaI | CYCGRG | 4 cut(s) | 675, 1148, 1288, 2198 |
| AvaII | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| AxyI | CCTNAGG | 1 cut(s) | 2139 |
| BanI | GGYRCC | 2 cut(s) | 285, 550 |
| BanII | GRGCYC | 3 cut(s) | 265, 564, 1125 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2142, 2174 |
| BbsI | GAAGAC | 2 cut(s) | 719, 2840 |
| Bbv12I | GWGCWC | 3 cut(s) | 265, 1585, 2371 |
| BbvCI | CCTCAGC | 1 cut(s) | 2778 |
| BccI | CCATC | 7 cut(s) | 808, 1102, 1151, 1850, 1894, 2708, 2942 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 842, 876 |
| BciT130I | CCWGG | 5 cut(s) | 53, 503, 934, 1251, 3027 |
| BclI | TGATCA | 2 cut(s) | 388, 1188 |
| BcnI | CCSGG | 2 cut(s) | 2335, 2594 |
| BcoDI | GTCTC | 5 cut(s) | 318, 450, 1031, 2639, 2795 |
| BcuI | ACTAGT | 1 cut(s) | 2927 |
| BfmI | CTRYAG | 2 cut(s) | 404, 2490 |
| BfrI | CTTAAG | 1 cut(s) | 1057 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2173 |
| BglII | AGATCT | 2 cut(s) | 1072, 1340 |
| Bme1390I | CCNGG | 7 cut(s) | 53, 503, 934, 1251, 2335, 2594, 3027 |
| Bme18I | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2520 |
| BmeT110I | CYCGRG | 4 cut(s) | 675, 1148, 1288, 2198 |
| BmgT120I | GGNCC | 5 cut(s) | 1152, 1421, 1550, 2056, 2582 |
| BmiI | GGNNCC | 5 cut(s) | 287, 552, 1153, 1422, 2758 |
| BmrFI | CCNGG | 7 cut(s) | 53, 503, 934, 1251, 2335, 2594, 3027 |
| BmsI | GCATC | 7 cut(s) | 405, 673, 1272, 1302, 1996, 2549, 2582 |
| BmtI | GCTAGC | 1 cut(s) | 587 |
| BpiI | GAAGAC | 2 cut(s) | 719, 2840 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 656, 688, 849, 881 |
| BpmI | CTGGAG | 3 cut(s) | 1853, 2198, 2819 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1276, 2646, 2778 |
| Bpu14I | TTCGAA | 1 cut(s) | 3002 |
| BpuEI | CTTGAG | 5 cut(s) | 54, 165, 980, 2420, 2441 |
| BpuMI | CCSGG | 2 cut(s) | 2335, 2594 |
| Bsa29I | ATCGAT | 1 cut(s) | 2273 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1187 |
| BsaJI | CCNNGG | 6 cut(s) | 502, 1147, 1249, 1624, 2578, 2973 |
| BsaWI | WCCGGW | 3 cut(s) | 1028, 1667, 2552 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2748, 2778 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 295, 1149, 1254, 1255, 1417, 1630, 2559, 2600, 2753 |
| Bse118I | RCCGGY | 1 cut(s) | 2552 |
| Bse1I | ACTGG | 5 cut(s) | 824, 844, 1026, 2733, 2802 |
| Bse21I | CCTNAGG | 1 cut(s) | 2139 |
| Bse3DI | GCAATG | 3 cut(s) | 543, 1578, 2651 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1187 |
| BseAI | TCCGGA | 1 cut(s) | 1667 |
| BseBI | CCWGG | 5 cut(s) | 53, 503, 934, 1251, 3027 |
| BseCI | ATCGAT | 1 cut(s) | 2273 |
| BseDI | CCNNGG | 6 cut(s) | 502, 1147, 1249, 1624, 2578, 2973 |
| BseGI | GGATG | 7 cut(s) | 88, 929, 1113, 1143, 2540, 2573, 2953 |
| BseJI | GATNNNNATC | 1 cut(s) | 1187 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 295, 1149, 1254, 1255, 1417, 1630, 2559, 2600, 2753 |
| BseMI | GCAATG | 3 cut(s) | 543, 1578, 2651 |
| BseMII | CTCAG | 5 cut(s) | 461, 1431, 2130, 2481, 2769 |
| BseNI | ACTGG | 5 cut(s) | 824, 844, 1026, 2733, 2802 |
| BseRI | GAGGAG | 4 cut(s) | 1646, 2442, 2736, 2769 |
| BseYI | CCCAGC | 1 cut(s) | 2127 |
| BshFI | GGCC | 8 cut(s) | 230, 1055, 1215, 1423, 1552, 1969, 2783, 2969 |
| BshNI | GGYRCC | 2 cut(s) | 285, 550 |
| BshTI | ACCGGT | 1 cut(s) | 2552 |
| BshVI | ATCGAT | 1 cut(s) | 2273 |
| BsiHKAI | GWGCWC | 3 cut(s) | 265, 1585, 2371 |
| BsiHKCI | CYCGRG | 4 cut(s) | 675, 1148, 1288, 2198 |
| BsiSI | CCGG | 5 cut(s) | 1029, 1668, 2334, 2553, 2594 |
| BslFI | GGGAC | 4 cut(s) | 40, 1165, 1231, 1298 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 295, 1149, 1254, 1255, 1417, 1630, 2559, 2600, 2753 |
| BsmAI | GTCTC | 5 cut(s) | 318, 450, 1031, 2639, 2795 |
| BsmBI | CGTCTC | 1 cut(s) | 1031 |
| BsmFI | GGGAC | 4 cut(s) | 40, 1165, 1231, 1298 |
| BsnI | GGCC | 8 cut(s) | 230, 1055, 1215, 1423, 1552, 1969, 2783, 2969 |
| BsoBI | CYCGRG | 4 cut(s) | 675, 1148, 1288, 2198 |
| Bsp119I | TTCGAA | 1 cut(s) | 3002 |
| Bsp1286I | GDGCHC | 5 cut(s) | 265, 564, 1125, 1585, 2371 |
| Bsp13I | TCCGGA | 1 cut(s) | 1667 |
| Bsp1407I | TGTACA | 1 cut(s) | 2221 |
| BspACI | CCGC | 3 cut(s) | 937, 2604, 2970 |
| BspANI | GGCC | 8 cut(s) | 230, 1055, 1215, 1423, 1552, 1969, 2783, 2969 |
| BspCNI | CTCAG | 5 cut(s) | 460, 1432, 2131, 2480, 2770 |
| BspDI | ATCGAT | 1 cut(s) | 2273 |
| BspEI | TCCGGA | 1 cut(s) | 1667 |
| BspHI | TCATGA | 1 cut(s) | 2941 |
| BspLI | GGNNCC | 5 cut(s) | 287, 552, 1153, 1422, 2758 |
| BspMAI | CTGCAG | 1 cut(s) | 2494 |
| BspOI | GCTAGC | 1 cut(s) | 587 |
| BspPI | GGATC | 4 cut(s) | 1266, 1687, 2381, 2902 |
| BspT104I | TTCGAA | 1 cut(s) | 3002 |
| BspT107I | GGYRCC | 2 cut(s) | 285, 550 |
| BspTI | CTTAAG | 1 cut(s) | 1057 |
| BsrDI | GCAATG | 3 cut(s) | 543, 1578, 2651 |
| BsrFI | RCCGGY | 1 cut(s) | 2552 |
| BsrGI | TGTACA | 1 cut(s) | 2221 |
| BsrI | ACTGG | 5 cut(s) | 824, 844, 1026, 2733, 2802 |
| BssAI | RCCGGY | 1 cut(s) | 2552 |
| BssECI | CCNNGG | 6 cut(s) | 502, 1147, 1249, 1624, 2578, 2973 |
| BssT1I | CCWWGG | 2 cut(s) | 1624, 2973 |
| Bst2UI | CCWGG | 5 cut(s) | 53, 503, 934, 1251, 3027 |
| Bst4CI | ACNGT | 1 cut(s) | 811 |
| Bst6I | CTCTTC | 5 cut(s) | 756, 963, 2070, 2126, 2829 |
| BstAFI | CTTAAG | 1 cut(s) | 1057 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 194, 2489 |
| BstAUI | TGTACA | 1 cut(s) | 2221 |
| BstBI | TTCGAA | 1 cut(s) | 3002 |
| BstC8I | GCNNGC | 4 cut(s) | 195, 585, 1971, 2239 |
| BstDSI | CCRYGG | 1 cut(s) | 2578 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1415, 1628, 2751 |
| BstF5I | GGATG | 7 cut(s) | 88, 929, 1113, 1143, 2540, 2573, 2953 |
| BstHHI | GCGC | 4 cut(s) | 1800, 2407, 2412, 2913 |
| BstMAI | GTCTC | 5 cut(s) | 318, 450, 1031, 2639, 2795 |
| BstNI | CCWGG | 5 cut(s) | 53, 503, 934, 1251, 3027 |
| BstNSI | RCATGY | 2 cut(s) | 852, 2416 |
| BstSCI | CCNGG | 7 cut(s) | 51, 501, 932, 1249, 2333, 2592, 3025 |
| BstSFI | CTRYAG | 2 cut(s) | 404, 2490 |
| BstV2I | GAAGAC | 2 cut(s) | 719, 2840 |
| BstX2I | RGATCY | 4 cut(s) | 1072, 1340, 1679, 2386 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2053 |
| BstYI | RGATCY | 4 cut(s) | 1072, 1340, 1679, 2386 |
| Bsu15I | ATCGAT | 1 cut(s) | 2273 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2139 |
| BsuRI | GGCC | 8 cut(s) | 230, 1055, 1215, 1423, 1552, 1969, 2783, 2969 |
| BsuTUI | ATCGAT | 1 cut(s) | 2273 |
| BtgI | CCRYGG | 1 cut(s) | 2578 |
| BtgZI | GCGATG | 1 cut(s) | 1913 |
| BtsCI | GGATG | 7 cut(s) | 88, 929, 1113, 1143, 2540, 2573, 2953 |
| BtsI | GCAGTG | 2 cut(s) | 2034, 2620 |
| BtsIMutI | CAGTG | 6 cut(s) | 837, 1125, 2034, 2475, 2620, 2726 |
| Cac8I | GCNNGC | 4 cut(s) | 195, 585, 1971, 2239 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2474 |
| CciI | TCATGA | 1 cut(s) | 2941 |
| CfoI | GCGC | 4 cut(s) | 1800, 2407, 2412, 2913 |
| Cfr10I | RCCGGY | 1 cut(s) | 2552 |
| Cfr13I | GGNCC | 5 cut(s) | 1152, 1421, 1550, 2056, 2582 |
| ClaI | ATCGAT | 1 cut(s) | 2273 |
| CsiI | ACCWGGT | 1 cut(s) | 51 |
| Csp6I | GTAC | 6 cut(s) | 143, 250, 308, 766, 843, 2222 |
| CspAI | ACCGGT | 1 cut(s) | 2552 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2380, 2415, 2713, 2748 |
| CviQI | GTAC | 6 cut(s) | 143, 250, 308, 766, 843, 2222 |
| DraIII | CACNNNGTG | 1 cut(s) | 298 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2520 |
| Eam1104I | CTCTTC | 5 cut(s) | 756, 963, 2070, 2126, 2829 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2520 |
| EarI | CTCTTC | 5 cut(s) | 756, 963, 2070, 2126, 2829 |
| Ecl136II | GAGCTC | 1 cut(s) | 263 |
| Eco130I | CCWWGG | 2 cut(s) | 1624, 2973 |
| Eco147I | AGGCCT | 2 cut(s) | 1055, 1969 |
| Eco24I | GRGCYC | 3 cut(s) | 265, 564, 1125 |
| Eco32I | GATATC | 2 cut(s) | 384, 592 |
| Eco47I | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| Eco53kI | GAGCTC | 1 cut(s) | 263 |
| Eco57I | CTGAAG | 3 cut(s) | 387, 657, 2183 |
| Eco81I | CCTNAGG | 1 cut(s) | 2139 |
| Eco88I | CYCGRG | 4 cut(s) | 675, 1148, 1288, 2198 |
| EcoICRI | GAGCTC | 1 cut(s) | 263 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1415, 1628, 2751 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1152, 1421 |
| EcoRI | GAATTC | 1 cut(s) | 1087 |
| EcoRII | CCWGG | 5 cut(s) | 51, 501, 932, 1249, 3025 |
| EcoRV | GATATC | 2 cut(s) | 384, 592 |
| EcoT14I | CCWWGG | 2 cut(s) | 1624, 2973 |
| EcoT38I | GRGCYC | 3 cut(s) | 265, 564, 1125 |
| ErhI | CCWWGG | 2 cut(s) | 1624, 2973 |
| Esp3I | CGTCTC | 1 cut(s) | 1031 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 181, 213 |
| FaqI | GGGAC | 4 cut(s) | 40, 1165, 1231, 1298 |
| FbaI | TGATCA | 2 cut(s) | 388, 1188 |
| FblI | GTMKAC | 1 cut(s) | 1605 |
| FokI | GGATG | 7 cut(s) | 95, 916, 1120, 1130, 2527, 2560, 2960 |
| FriOI | GRGCYC | 3 cut(s) | 265, 564, 1125 |
| GlaI | GCGC | 4 cut(s) | 1799, 2406, 2411, 2912 |
| GsaI | CCCAGC | 1 cut(s) | 2131 |
| GsuI | CTGGAG | 3 cut(s) | 1853, 2198, 2819 |
| HaeIII | GGCC | 8 cut(s) | 230, 1055, 1215, 1423, 1552, 1969, 2783, 2969 |
| HapII | CCGG | 5 cut(s) | 1029, 1668, 2334, 2553, 2594 |
| HhaI | GCGC | 4 cut(s) | 1800, 2407, 2412, 2913 |
| Hin6I | GCGC | 4 cut(s) | 1798, 2405, 2410, 2911 |
| HinP1I | GCGC | 4 cut(s) | 1798, 2405, 2410, 2911 |
| HincII | GTYRAC | 2 cut(s) | 45, 1892 |
| HindII | GTYRAC | 2 cut(s) | 45, 1892 |
| HindIII | AAGCTT | 2 cut(s) | 783, 1466 |
| HpaI | GTTAAC | 1 cut(s) | 45 |
| HpaII | CCGG | 5 cut(s) | 1029, 1668, 2334, 2553, 2594 |
| HphI | GGTGA | 7 cut(s) | 310, 406, 1183, 1399, 1906, 2228, 2693 |
| Hpy166II | GTNNAC | 7 cut(s) | 45, 1606, 1842, 1892, 2382, 2449, 2689 |
| Hpy8I | GTNNAC | 7 cut(s) | 45, 1606, 1842, 1892, 2382, 2449, 2689 |
| HpyCH4III | ACNGT | 1 cut(s) | 811 |
| HpyCH4IV | ACGT | 4 cut(s) | 727, 1040, 2888, 2995 |
| HpySE526I | ACGT | 4 cut(s) | 727, 1040, 2888, 2995 |
| HspAI | GCGC | 4 cut(s) | 1798, 2405, 2410, 2911 |
| Kpn2I | TCCGGA | 1 cut(s) | 1667 |
| Ksp22I | TGATCA | 2 cut(s) | 388, 1188 |
| KspAI | GTTAAC | 1 cut(s) | 45 |
| LmnI | GCTCC | 6 cut(s) | 10, 1626, 1805, 1859, 2429, 2756 |
| LweI | GCATC | 7 cut(s) | 405, 673, 1272, 1302, 1996, 2549, 2582 |
| MabI | ACCWGGT | 1 cut(s) | 51 |
| MaeII | ACGT | 4 cut(s) | 727, 1040, 2888, 2995 |
| MaeIII | GTNAC | 7 cut(s) | 316, 1405, 1912, 1929, 2470, 2617, 2982 |
| MfeI | CAATTG | 3 cut(s) | 1308, 1712, 2535 |
| MflI | RGATCY | 4 cut(s) | 1072, 1340, 1679, 2386 |
| MhlI | GDGCHC | 5 cut(s) | 265, 564, 1125, 1585, 2371 |
| MlyI | GAGTC | 8 cut(s) | 1253, 1280, 1442, 1601, 2090, 2664, 2816, 2854 |
| MmeI | TCCRAC | 2 cut(s) | 1328, 2912 |
| MroI | TCCGGA | 1 cut(s) | 1667 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1469, 2157, 2709 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2946 |
| MspCI | CTTAAG | 1 cut(s) | 1057 |
| MspI | CCGG | 5 cut(s) | 1029, 1668, 2334, 2553, 2594 |
| MspR9I | CCNGG | 7 cut(s) | 53, 503, 934, 1251, 2335, 2594, 3027 |
| MteI | GCGCNGCGC | 1 cut(s) | 2408 |
| MunI | CAATTG | 3 cut(s) | 1308, 1712, 2535 |
| MvaI | CCWGG | 5 cut(s) | 53, 503, 934, 1251, 3027 |
| NciI | CCSGG | 2 cut(s) | 2335, 2594 |
| NheI | GCTAGC | 1 cut(s) | 583 |
| NlaIV | GGNNCC | 5 cut(s) | 287, 552, 1153, 1422, 2758 |
| NmuCI | GTSAC | 5 cut(s) | 1405, 1912, 2470, 2617, 2982 |
| NspI | RCATGY | 2 cut(s) | 852, 2416 |
| NspV | TTCGAA | 1 cut(s) | 3002 |
| PaeR7I | CTCGAG | 3 cut(s) | 675, 1288, 2198 |
| PagI | TCATGA | 1 cut(s) | 2941 |
| PceI | AGGCCT | 2 cut(s) | 1055, 1969 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1469, 2157, 2709 |
| PinAI | ACCGGT | 1 cut(s) | 2552 |
| PleI | GAGTC | 8 cut(s) | 1252, 1280, 1441, 1601, 2089, 2664, 2816, 2853 |
| PpsI | GAGTC | 8 cut(s) | 1252, 1280, 1441, 1601, 2089, 2664, 2816, 2853 |
| PpuMI | RGGWCCY | 1 cut(s) | 1152 |
| Psp124BI | GAGCTC | 1 cut(s) | 265 |
| Psp1406I | AACGTT | 1 cut(s) | 2995 |
| Psp5II | RGGWCCY | 1 cut(s) | 1152 |
| Psp6I | CCWGG | 5 cut(s) | 51, 501, 932, 1249, 3025 |
| PspFI | CCCAGC | 1 cut(s) | 2127 |
| PspGI | CCWGG | 5 cut(s) | 51, 501, 932, 1249, 3025 |
| PspN4I | GGNNCC | 5 cut(s) | 287, 552, 1153, 1422, 2758 |
| PspPI | GGNCC | 5 cut(s) | 1152, 1421, 1550, 2056, 2582 |
| PspPPI | RGGWCCY | 1 cut(s) | 1152 |
| PspXI | VCTCGAGB | 1 cut(s) | 1288 |
| PstI | CTGCAG | 1 cut(s) | 2494 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2474 |
| PsuI | RGATCY | 4 cut(s) | 1072, 1340, 1679, 2386 |
| RsaI | GTAC | 6 cut(s) | 144, 251, 309, 767, 844, 2223 |
| RsaNI | GTAC | 6 cut(s) | 143, 250, 308, 766, 843, 2222 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2946 |
| SacI | GAGCTC | 1 cut(s) | 265 |
| Sau96I | GGNCC | 5 cut(s) | 1152, 1421, 1550, 2056, 2582 |
| SchI | GAGTC | 8 cut(s) | 1253, 1280, 1442, 1601, 2090, 2664, 2816, 2854 |
| ScrFI | CCNGG | 7 cut(s) | 53, 503, 934, 1251, 2335, 2594, 3027 |
| SduI | GDGCHC | 5 cut(s) | 265, 564, 1125, 1585, 2371 |
| SexAI | ACCWGGT | 1 cut(s) | 51 |
| SfaNI | GCATC | 7 cut(s) | 405, 673, 1272, 1302, 1996, 2549, 2582 |
| SfcI | CTRYAG | 2 cut(s) | 404, 2490 |
| Sfr274I | CTCGAG | 3 cut(s) | 675, 1288, 2198 |
| SfuI | TTCGAA | 1 cut(s) | 3002 |
| SinI | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| SlaI | CTCGAG | 3 cut(s) | 675, 1288, 2198 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2946 |
| SmlI | CTYRAG | 9 cut(s) | 69, 180, 675, 995, 1057, 1288, 2198, 2399, 2456 |
| SmoI | CTYRAG | 9 cut(s) | 69, 180, 675, 995, 1057, 1288, 2198, 2399, 2456 |
| SpeI | ACTAGT | 1 cut(s) | 2927 |
| SseBI | AGGCCT | 2 cut(s) | 1055, 1969 |
| SsiI | CCGC | 3 cut(s) | 937, 2604, 2970 |
| SstI | GAGCTC | 1 cut(s) | 265 |
| StuI | AGGCCT | 2 cut(s) | 1055, 1969 |
| StyD4I | CCNGG | 7 cut(s) | 51, 501, 932, 1249, 2333, 2592, 3025 |
| StyI | CCWWGG | 2 cut(s) | 1624, 2973 |
| TaaI | ACNGT | 1 cut(s) | 811 |
| TaiI | ACGT | 4 cut(s) | 730, 1043, 2891, 2998 |
| TaqI | TCGA | 9 cut(s) | 265, 676, 1289, 1473, 2199, 2273, 2513, 2703, 3002 |
| TatI | WGTACW | 3 cut(s) | 249, 765, 2221 |
| TauI | GCSGC | 1 cut(s) | 2972 |
| TscAI | CASTG | 6 cut(s) | 844, 1132, 2041, 2475, 2620, 2733 |
| TseFI | GTSAC | 5 cut(s) | 1405, 1912, 2470, 2617, 2982 |
| Tsp45I | GTSAC | 5 cut(s) | 1405, 1912, 2470, 2617, 2982 |
| TspDTI | ATGAA | 7 cut(s) | 714, 1338, 1478, 1839, 1893, 1976, 2297 |
| TspGWI | ACGGA | 1 cut(s) | 939 |
| TspRI | CASTG | 6 cut(s) | 844, 1132, 2041, 2475, 2620, 2733 |
| Vha464I | CTTAAG | 1 cut(s) | 1057 |
| VpaK11BI | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1415, 1628, 2751 |
| XapI | RAATTY | 7 cut(s) | 428, 456, 1087, 1370, 1455, 1612, 2107 |
| XbaI | TCTAGA | 1 cut(s) | 2851 |
| XceI | RCATGY | 2 cut(s) | 852, 2416 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2556 |
| XhoI | CTCGAG | 3 cut(s) | 675, 1288, 2198 |
| XmiI | GTMKAC | 1 cut(s) | 1605 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1469, 2157, 2709 |