U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g01981 |
| malus_domestica | MD13G1203200.v1.1 MD16G1204600.v1.1 |
| prunus_persica | Prupe.1G025700_v2.0.a1 Prupe.1G025700_v2.0.a1 Prupe.1G025700_v2.0.a1 |
| pyrus_communis | pycom13g17650 pycom16g17270 |
| rosa_chinensis | RchiOBHm_Chr4g0388951 |
| rosa_laevigata | RLG00000010004 |
| rosa_multiflora | Rmu_sc0001395.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00335270 |
| rosa_rugosa | Rorug03G0321600 |
| rosa_samantha | Rh4AG026100 Rh4BG019300 Rh4CG029100 Rh4DG019800 |
| rosa_wichuraiana | Rw0G003670 Rw4G001880 Rw4G001920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1136 |
| AarI | CACCTGC | 1 cut(s) | 2624 |
| AatII | GACGTC | 1 cut(s) | 1043 |
| Acc16I | TGCGCA | 1 cut(s) | 1985 |
| Acc36I | ACCTGC | 1 cut(s) | 2624 |
| AccB1I | GGYRCC | 1 cut(s) | 2612 |
| AccI | GTMKAC | 3 cut(s) | 1608, 2419, 2854 |
| AccIII | TCCGGA | 1 cut(s) | 1968 |
| AciI | CCGC | 4 cut(s) | 776, 861, 2033, 2481 |
| AclI | AACGTT | 1 cut(s) | 3001 |
| AclWI | GGATC | 3 cut(s) | 1266, 2387, 2908 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcsI | RAATTY | 7 cut(s) | 428, 1087, 1351, 1615, 1844, 1871, 2891 |
| AcuI | CTGAAG | 2 cut(s) | 387, 657 |
| AcyI | GRCGYC | 1 cut(s) | 1040 |
| AdeI | CACNNNGTG | 1 cut(s) | 2609 |
| AfaI | GTAC | 7 cut(s) | 251, 309, 844, 1390, 1426, 2162, 2229 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 502, 1254, 1255, 1277, 1420, 1633, 2565, 2759 |
| AflII | CTTAAG | 2 cut(s) | 779, 1057 |
| AflIII | ACRYGT | 1 cut(s) | 848 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 296 |
| AhlI | ACTAGT | 1 cut(s) | 755 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1937, 1969 |
| AleI | CACNNNNGTG | 1 cut(s) | 2543 |
| Alw21I | GWGCWC | 3 cut(s) | 265, 2377, 2590 |
| Alw26I | GTCTC | 2 cut(s) | 450, 1031 |
| AlwI | GGATC | 3 cut(s) | 1266, 2387, 2908 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1757 |
| Ama87I | CYCGRG | 2 cut(s) | 675, 1901 |
| Aor13HI | TCCGGA | 1 cut(s) | 1968 |
| AoxI | GGCC | 6 cut(s) | 36, 735, 1279, 1553, 1956, 1973 |
| ApoI | RAATTY | 7 cut(s) | 428, 1087, 1351, 1615, 1844, 1871, 2891 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 491, 523, 1679, 1711, 2393, 2425 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2715, 2827 |
| AspLEI | GCGC | 2 cut(s) | 70, 1986 |
| AspS9I | GGNCC | 5 cut(s) | 27, 109, 1553, 2343, 2466 |
| AsuC2I | CCSGG | 1 cut(s) | 2686 |
| AsuHPI | GGTGA | 5 cut(s) | 406, 1183, 1591, 1643, 1912 |
| AsuII | TTCGAA | 1 cut(s) | 90 |
| AvaI | CYCGRG | 2 cut(s) | 675, 1901 |
| AvaII | GGWCC | 4 cut(s) | 27, 109, 2343, 2466 |
| AxyI | CCTNAGG | 1 cut(s) | 2145 |
| BanI | GGYRCC | 1 cut(s) | 2612 |
| BanII | GRGCYC | 1 cut(s) | 265 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1629, 1661 |
| BauI | CACGAG | 1 cut(s) | 2138 |
| Bbv12I | GWGCWC | 3 cut(s) | 265, 2377, 2590 |
| BceAI | ACGGC | 2 cut(s) | 23, 1266 |
| BclI | TGATCA | 1 cut(s) | 1188 |
| BcnI | CCSGG | 1 cut(s) | 2686 |
| BcoDI | GTCTC | 2 cut(s) | 450, 1031 |
| BcuI | ACTAGT | 1 cut(s) | 755 |
| BfaI | CTAG | 3 cut(s) | 189, 756, 1784 |
| BfmI | CTRYAG | 3 cut(s) | 1363, 2496, 2617 |
| BfrI | CTTAAG | 2 cut(s) | 779, 1057 |
| BfuAI | ACCTGC | 1 cut(s) | 2624 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2179 |
| BglII | AGATCT | 4 cut(s) | 1004, 1072, 1340, 2808 |
| Bme18I | GGWCC | 4 cut(s) | 27, 109, 2343, 2466 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 296 |
| BmeT110I | CYCGRG | 2 cut(s) | 675, 1901 |
| BmgT120I | GGNCC | 5 cut(s) | 27, 109, 1553, 2343, 2466 |
| BmiI | GGNNCC | 5 cut(s) | 28, 1895, 2344, 2614, 2764 |
| BmrI | ACTGGG | 1 cut(s) | 436 |
| BmuI | ACTGGG | 1 cut(s) | 436 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 656, 688 |
| BpmI | CTGGAG | 2 cut(s) | 2204, 2426 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1276, 1708 |
| Bpu14I | TTCGAA | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 6 cut(s) | 165, 980, 1273, 2153, 2225, 2819 |
| BpuMI | CCSGG | 1 cut(s) | 2686 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1187 |
| BsaHI | GRCGYC | 1 cut(s) | 1040 |
| BsaWI | WCCGGW | 1 cut(s) | 1968 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2754, 2784 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 502, 1254, 1255, 1277, 1420, 1633, 2565, 2759 |
| Bse1I | ACTGG | 9 cut(s) | 144, 442, 824, 844, 1109, 2047, 2064, 2427, 2938 |
| Bse21I | CCTNAGG | 1 cut(s) | 2145 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1187 |
| BseAI | TCCGGA | 1 cut(s) | 1968 |
| BseGI | GGATG | 4 cut(s) | 2227, 2311, 2555, 2959 |
| BseJI | GATNNNNATC | 1 cut(s) | 1187 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 502, 1254, 1255, 1277, 1420, 1633, 2565, 2759 |
| BseMII | CTCAG | 6 cut(s) | 461, 579, 1434, 2082, 2136, 2487 |
| BseNI | ACTGG | 9 cut(s) | 144, 442, 824, 844, 1109, 2047, 2064, 2427, 2938 |
| BseRI | GAGGAG | 4 cut(s) | 1616, 2448, 2742, 2775 |
| BseYI | CCCAGC | 1 cut(s) | 2133 |
| BsgI | GTGCAG | 2 cut(s) | 1405, 1524 |
| BshFI | GGCC | 6 cut(s) | 38, 737, 1281, 1555, 1958, 1975 |
| BshNI | GGYRCC | 1 cut(s) | 2612 |
| BsiHKAI | GWGCWC | 3 cut(s) | 265, 2377, 2590 |
| BsiHKCI | CYCGRG | 2 cut(s) | 675, 1901 |
| BsiSI | CCGG | 3 cut(s) | 1969, 2559, 2685 |
| BslFI | GGGAC | 3 cut(s) | 40, 190, 2356 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 502, 1254, 1255, 1277, 1420, 1633, 2565, 2759 |
| BsmAI | GTCTC | 2 cut(s) | 450, 1031 |
| BsmBI | CGTCTC | 1 cut(s) | 1031 |
| BsmFI | GGGAC | 3 cut(s) | 40, 190, 2356 |
| BsnI | GGCC | 6 cut(s) | 38, 737, 1281, 1555, 1958, 1975 |
| BsoBI | CYCGRG | 2 cut(s) | 675, 1901 |
| Bsp119I | TTCGAA | 1 cut(s) | 90 |
| Bsp1286I | GDGCHC | 3 cut(s) | 265, 2377, 2590 |
| Bsp13I | TCCGGA | 1 cut(s) | 1968 |
| Bsp1407I | TGTACA | 1 cut(s) | 2227 |
| BspACI | CCGC | 4 cut(s) | 776, 861, 2033, 2481 |
| BspANI | GGCC | 6 cut(s) | 38, 737, 1281, 1555, 1958, 1975 |
| BspCNI | CTCAG | 6 cut(s) | 460, 578, 1435, 2083, 2137, 2486 |
| BspEI | TCCGGA | 1 cut(s) | 1968 |
| BspHI | TCATGA | 1 cut(s) | 2947 |
| BspLI | GGNNCC | 5 cut(s) | 28, 1895, 2344, 2614, 2764 |
| BspMAI | CTGCAG | 3 cut(s) | 1367, 2500, 2621 |
| BspMI | ACCTGC | 1 cut(s) | 2624 |
| BspPI | GGATC | 3 cut(s) | 1266, 2387, 2908 |
| BspT104I | TTCGAA | 1 cut(s) | 90 |
| BspT107I | GGYRCC | 1 cut(s) | 2612 |
| BspTI | CTTAAG | 2 cut(s) | 779, 1057 |
| BsrGI | TGTACA | 1 cut(s) | 2227 |
| BsrI | ACTGG | 9 cut(s) | 144, 442, 824, 844, 1109, 2047, 2064, 2427, 2938 |
| BssNAI | GTATAC | 1 cut(s) | 2420 |
| BssNI | GRCGYC | 1 cut(s) | 1040 |
| BssSI | CACGAG | 1 cut(s) | 2138 |
| BssT1I | CCWWGG | 2 cut(s) | 1011, 1147 |
| Bst1107I | GTATAC | 1 cut(s) | 2420 |
| Bst2BI | CACGAG | 1 cut(s) | 2138 |
| Bst4CI | ACNGT | 7 cut(s) | 236, 811, 884, 1383, 1429, 1692, 2542 |
| Bst6I | CTCTTC | 6 cut(s) | 756, 963, 1169, 2076, 2132, 2835 |
| BstACI | GRCGYC | 1 cut(s) | 1040 |
| BstAFI | CTTAAG | 2 cut(s) | 779, 1057 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2495 |
| BstAUI | TGTACA | 1 cut(s) | 2227 |
| BstBI | TTCGAA | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 7 cut(s) | 72, 195, 525, 585, 619, 1218, 2245 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 500, 1418, 1631, 2757 |
| BstF5I | GGATG | 4 cut(s) | 2227, 2311, 2555, 2959 |
| BstHHI | GCGC | 2 cut(s) | 70, 1986 |
| BstMAI | GTCTC | 2 cut(s) | 450, 1031 |
| BstNSI | RCATGY | 4 cut(s) | 74, 523, 852, 1220 |
| BstSFI | CTRYAG | 3 cut(s) | 1363, 2496, 2617 |
| BstX2I | RGATCY | 5 cut(s) | 1004, 1072, 1340, 2392, 2808 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2059, 2404, 2606 |
| BstYI | RGATCY | 5 cut(s) | 1004, 1072, 1340, 2392, 2808 |
| BstZ17I | GTATAC | 1 cut(s) | 2420 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2145 |
| BsuRI | GGCC | 6 cut(s) | 38, 737, 1281, 1555, 1958, 1975 |
| BtgZI | GCGATG | 1 cut(s) | 2061 |
| BtsCI | GGATG | 4 cut(s) | 2227, 2311, 2555, 2959 |
| BtsI | GCAGTG | 1 cut(s) | 2626 |
| BtsIMutI | CAGTG | 8 cut(s) | 837, 889, 1388, 2040, 2057, 2481, 2538, 2626 |
| BveI | ACCTGC | 1 cut(s) | 2624 |
| Cac8I | GCNNGC | 7 cut(s) | 72, 195, 525, 585, 619, 1218, 2245 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1757 |
| CciI | TCATGA | 1 cut(s) | 2947 |
| CfoI | GCGC | 2 cut(s) | 70, 1986 |
| Cfr13I | GGNCC | 5 cut(s) | 27, 109, 1553, 2343, 2466 |
| CsiI | ACCWGGT | 2 cut(s) | 51, 2667 |
| Csp6I | GTAC | 7 cut(s) | 250, 308, 843, 1389, 1425, 2161, 2228 |
| CviQI | GTAC | 7 cut(s) | 250, 308, 843, 1389, 1425, 2161, 2228 |
| DraI | TTTAAA | 1 cut(s) | 1419 |
| DraIII | CACNNNGTG | 1 cut(s) | 2609 |
| DriI | GACNNNNNGTC | 1 cut(s) | 296 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 6 cut(s) | 756, 963, 1169, 2076, 2132, 2835 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 296 |
| EarI | CTCTTC | 6 cut(s) | 756, 963, 1169, 2076, 2132, 2835 |
| Ecl136II | GAGCTC | 1 cut(s) | 263 |
| Eco130I | CCWWGG | 2 cut(s) | 1011, 1147 |
| Eco147I | AGGCCT | 1 cut(s) | 1975 |
| Eco24I | GRGCYC | 1 cut(s) | 265 |
| Eco32I | GATATC | 1 cut(s) | 384 |
| Eco47I | GGWCC | 4 cut(s) | 27, 109, 2343, 2466 |
| Eco53kI | GAGCTC | 1 cut(s) | 263 |
| Eco57I | CTGAAG | 2 cut(s) | 387, 657 |
| Eco81I | CCTNAGG | 1 cut(s) | 2145 |
| Eco88I | CYCGRG | 2 cut(s) | 675, 1901 |
| EcoICRI | GAGCTC | 1 cut(s) | 263 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 500, 1418, 1631, 2757 |
| EcoO109I | RGGNCCY | 1 cut(s) | 109 |
| EcoRI | GAATTC | 1 cut(s) | 1087 |
| EcoRV | GATATC | 1 cut(s) | 384 |
| EcoT14I | CCWWGG | 2 cut(s) | 1011, 1147 |
| EcoT38I | GRGCYC | 1 cut(s) | 265 |
| ErhI | CCWWGG | 2 cut(s) | 1011, 1147 |
| Esp3I | CGTCTC | 1 cut(s) | 1031 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2855, 2887 |
| FaqI | GGGAC | 3 cut(s) | 40, 190, 2356 |
| FbaI | TGATCA | 1 cut(s) | 1188 |
| FblI | GTMKAC | 3 cut(s) | 1608, 2419, 2854 |
| FokI | GGATG | 4 cut(s) | 2234, 2318, 2542, 2966 |
| FriOI | GRGCYC | 1 cut(s) | 265 |
| FspBI | CTAG | 3 cut(s) | 189, 756, 1784 |
| FspI | TGCGCA | 1 cut(s) | 1985 |
| GlaI | GCGC | 2 cut(s) | 69, 1985 |
| GsaI | CCCAGC | 1 cut(s) | 2137 |
| GsuI | CTGGAG | 2 cut(s) | 2204, 2426 |
| HaeIII | GGCC | 6 cut(s) | 38, 737, 1281, 1555, 1958, 1975 |
| HapII | CCGG | 3 cut(s) | 1969, 2559, 2685 |
| HhaI | GCGC | 2 cut(s) | 70, 1986 |
| Hin1I | GRCGYC | 1 cut(s) | 1040 |
| Hin6I | GCGC | 2 cut(s) | 68, 1984 |
| HinP1I | GCGC | 2 cut(s) | 68, 1984 |
| HincII | GTYRAC | 2 cut(s) | 1594, 1609 |
| HindII | GTYRAC | 2 cut(s) | 1594, 1609 |
| HindIII | AAGCTT | 1 cut(s) | 2655 |
| HpaI | GTTAAC | 1 cut(s) | 1594 |
| HpaII | CCGG | 3 cut(s) | 1969, 2559, 2685 |
| HphI | GGTGA | 5 cut(s) | 406, 1183, 1591, 1643, 1912 |
| Hpy166II | GTNNAC | 7 cut(s) | 1594, 1609, 2388, 2420, 2455, 2695, 2855 |
| Hpy188I | TCNGA | 9 cut(s) | 388, 492, 568, 596, 1855, 2086, 2092, 2272, 2505 |
| Hpy8I | GTNNAC | 7 cut(s) | 1594, 1609, 2388, 2420, 2455, 2695, 2855 |
| HpyCH4III | ACNGT | 7 cut(s) | 236, 811, 884, 1383, 1429, 1692, 2542 |
| HpyCH4IV | ACGT | 3 cut(s) | 315, 1040, 3001 |
| HpySE526I | ACGT | 3 cut(s) | 315, 1040, 3001 |
| Hsp92I | GRCGYC | 1 cut(s) | 1040 |
| HspAI | GCGC | 2 cut(s) | 68, 1984 |
| Kpn2I | TCCGGA | 1 cut(s) | 1968 |
| Ksp22I | TGATCA | 1 cut(s) | 1188 |
| KspAI | GTTAAC | 1 cut(s) | 1594 |
| LmnI | GCTCC | 7 cut(s) | 10, 456, 1629, 1893, 2435, 2593, 2762 |
| MabI | ACCWGGT | 2 cut(s) | 51, 2667 |
| MaeI | CTAG | 3 cut(s) | 189, 756, 1784 |
| MaeII | ACGT | 3 cut(s) | 315, 1040, 3001 |
| MaeIII | GTNAC | 9 cut(s) | 316, 402, 941, 1283, 1935, 2038, 2476, 2623, 2988 |
| MfeI | CAATTG | 1 cut(s) | 1308 |
| MflI | RGATCY | 5 cut(s) | 1004, 1072, 1340, 2392, 2808 |
| MhlI | GDGCHC | 3 cut(s) | 265, 2377, 2590 |
| MlyI | GAGTC | 8 cut(s) | 212, 1280, 1445, 1604, 2075, 2081, 2417, 2860 |
| MmeI | TCCRAC | 3 cut(s) | 526, 1328, 2109 |
| MroI | TCCGGA | 1 cut(s) | 1968 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2715, 2827 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2543, 2952 |
| MspA1I | CMGCKG | 1 cut(s) | 1442 |
| MspCI | CTTAAG | 2 cut(s) | 779, 1057 |
| MspI | CCGG | 3 cut(s) | 1969, 2559, 2685 |
| MunI | CAATTG | 1 cut(s) | 1308 |
| NciI | CCSGG | 1 cut(s) | 2686 |
| NlaIV | GGNNCC | 5 cut(s) | 28, 1895, 2344, 2614, 2764 |
| NmuCI | GTSAC | 5 cut(s) | 1283, 2038, 2476, 2623, 2988 |
| NsbI | TGCGCA | 1 cut(s) | 1985 |
| NspI | RCATGY | 4 cut(s) | 74, 523, 852, 1220 |
| NspV | TTCGAA | 1 cut(s) | 90 |
| OliI | CACNNNNGTG | 1 cut(s) | 2543 |
| PaeI | GCATGC | 2 cut(s) | 74, 1220 |
| PaeR7I | CTCGAG | 2 cut(s) | 675, 1901 |
| PagI | TCATGA | 1 cut(s) | 2947 |
| PaqCI | CACCTGC | 1 cut(s) | 2624 |
| PasI | CCCWGGG | 2 cut(s) | 1249, 3032 |
| PceI | AGGCCT | 1 cut(s) | 1975 |
| PciI | ACATGT | 1 cut(s) | 848 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2715, 2827 |
| PfeI | GAWTC | 7 cut(s) | 176, 1244, 1945, 1998, 2095, 2512, 2828 |
| PfoI | TCCNGGA | 1 cut(s) | 1836 |
| PleI | GAGTC | 8 cut(s) | 211, 1280, 1444, 1604, 2075, 2081, 2416, 2859 |
| PpsI | GAGTC | 8 cut(s) | 211, 1280, 1444, 1604, 2075, 2081, 2416, 2859 |
| PpuMI | RGGWCCY | 1 cut(s) | 109 |
| PscI | ACATGT | 1 cut(s) | 848 |
| PsiI | TTATAA | 1 cut(s) | 1136 |
| Psp124BI | GAGCTC | 1 cut(s) | 265 |
| Psp1406I | AACGTT | 1 cut(s) | 3001 |
| Psp5II | RGGWCCY | 1 cut(s) | 109 |
| PspFI | CCCAGC | 1 cut(s) | 2133 |
| PspN4I | GGNNCC | 5 cut(s) | 28, 1895, 2344, 2614, 2764 |
| PspPI | GGNCC | 5 cut(s) | 27, 109, 1553, 2343, 2466 |
| PspPPI | RGGWCCY | 1 cut(s) | 109 |
| PspXI | VCTCGAGB | 1 cut(s) | 1901 |
| PstI | CTGCAG | 3 cut(s) | 1367, 2500, 2621 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1757 |
| PsuI | RGATCY | 5 cut(s) | 1004, 1072, 1340, 2392, 2808 |
| PvuII | CAGCTG | 1 cut(s) | 1442 |
| RsaI | GTAC | 7 cut(s) | 251, 309, 844, 1390, 1426, 2162, 2229 |
| RsaNI | GTAC | 7 cut(s) | 250, 308, 843, 1389, 1425, 2161, 2228 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2543, 2952 |
| SacI | GAGCTC | 1 cut(s) | 265 |
| SalI | GTCGAC | 1 cut(s) | 1607 |
| Sau96I | GGNCC | 5 cut(s) | 27, 109, 1553, 2343, 2466 |
| SchI | GAGTC | 8 cut(s) | 212, 1280, 1445, 1604, 2075, 2081, 2417, 2860 |
| SduI | GDGCHC | 3 cut(s) | 265, 2377, 2590 |
| SexAI | ACCWGGT | 2 cut(s) | 51, 2667 |
| SfcI | CTRYAG | 3 cut(s) | 1363, 2496, 2617 |
| Sfr274I | CTCGAG | 2 cut(s) | 675, 1901 |
| SfuI | TTCGAA | 1 cut(s) | 90 |
| SinI | GGWCC | 4 cut(s) | 27, 109, 2343, 2466 |
| SlaI | CTCGAG | 2 cut(s) | 675, 1901 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2543, 2952 |
| SpeI | ACTAGT | 1 cut(s) | 755 |
| SphI | GCATGC | 2 cut(s) | 74, 1220 |
| SseBI | AGGCCT | 1 cut(s) | 1975 |
| SsiI | CCGC | 4 cut(s) | 776, 861, 2033, 2481 |
| SspI | AATATT | 1 cut(s) | 1678 |
| SspMI | CTAG | 3 cut(s) | 189, 756, 1784 |
| SstI | GAGCTC | 1 cut(s) | 265 |
| StuI | AGGCCT | 1 cut(s) | 1975 |
| StyI | CCWWGG | 2 cut(s) | 1011, 1147 |
| TaaI | ACNGT | 7 cut(s) | 236, 811, 884, 1383, 1429, 1692, 2542 |
| TaiI | ACGT | 3 cut(s) | 318, 1043, 3004 |
| TaqI | TCGA | 7 cut(s) | 90, 259, 676, 1608, 1902, 2098, 2709 |
| TatI | WGTACW | 3 cut(s) | 249, 1388, 2227 |
| TauI | GCSGC | 1 cut(s) | 863 |
| TfiI | GAWTC | 7 cut(s) | 176, 1244, 1945, 1998, 2095, 2512, 2828 |
| TscAI | CASTG | 8 cut(s) | 844, 889, 1388, 2047, 2064, 2481, 2545, 2626 |
| TseFI | GTSAC | 5 cut(s) | 1283, 2038, 2476, 2623, 2988 |
| Tsp45I | GTSAC | 5 cut(s) | 1283, 2038, 2476, 2623, 2988 |
| TspDTI | ATGAA | 9 cut(s) | 714, 1338, 1481, 1538, 1757, 1845, 1899, 2363, 2936 |
| TspRI | CASTG | 8 cut(s) | 844, 889, 1388, 2047, 2064, 2481, 2545, 2626 |
| Vha464I | CTTAAG | 2 cut(s) | 779, 1057 |
| VpaK11BI | GGWCC | 4 cut(s) | 27, 109, 2343, 2466 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 500, 1418, 1631, 2757 |
| XapI | RAATTY | 7 cut(s) | 428, 1087, 1351, 1615, 1844, 1871, 2891 |
| XceI | RCATGY | 4 cut(s) | 74, 523, 852, 1220 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1741, 2562, 2606 |
| XhoI | CTCGAG | 2 cut(s) | 675, 1901 |
| XmiI | GTMKAC | 3 cut(s) | 1608, 2419, 2854 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2715, 2827 |
| XspI | CTAG | 3 cut(s) | 189, 756, 1784 |
| ZraI | GACGTC | 1 cut(s) | 1041 |