U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g01981 |
| malus_domestica | MD13G1203200.v1.1 MD16G1204600.v1.1 |
| prunus_persica | Prupe.1G025700_v2.0.a1 Prupe.1G025700_v2.0.a1 Prupe.1G025700_v2.0.a1 |
| pyrus_communis | pycom13g17650 pycom16g17270 |
| rosa_chinensis | RchiOBHm_Chr4g0388951 |
| rosa_laevigata | RLG00000010004 |
| rosa_multiflora | Rmu_sc0001395.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00335270 |
| rosa_rugosa | Rorug03G0321600 |
| rosa_samantha | Rh4AG026100 Rh4BG019300 Rh4CG029100 Rh4DG019800 |
| rosa_wichuraiana | Rw0G003670 Rw4G001880 Rw4G001920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1136 |
| AccB1I | GGYRCC | 2 cut(s) | 285, 550 |
| AciI | CCGC | 5 cut(s) | 1282, 2027, 2595, 2604, 2969 |
| AclI | AACGTT | 1 cut(s) | 2995 |
| AclWI | GGATC | 4 cut(s) | 487, 1266, 2381, 2902 |
| AcoI | YGGCCR | 3 cut(s) | 2302, 2950, 2970 |
| AcsI | RAATTY | 6 cut(s) | 428, 456, 1087, 1558, 1865, 2107 |
| AcuI | CTGAAG | 2 cut(s) | 387, 657 |
| AfaI | GTAC | 6 cut(s) | 251, 309, 844, 1423, 2223, 3035 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 502, 1254, 1255, 1417, 1630, 2559, 2600, 2753 |
| AflII | CTTAAG | 1 cut(s) | 1057 |
| AflIII | ACRYGT | 1 cut(s) | 727 |
| AgeI | ACCGGT | 1 cut(s) | 823 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 296, 2631 |
| AjnI | CCWGG | 7 cut(s) | 33, 51, 501, 932, 1249, 2972, 3025 |
| Alw21I | GWGCWC | 3 cut(s) | 265, 1800, 2371 |
| Alw26I | GTCTC | 4 cut(s) | 318, 450, 2639, 2795 |
| Alw44I | GTGCAC | 1 cut(s) | 1796 |
| AlwI | GGATC | 4 cut(s) | 487, 1266, 2381, 2902 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2474 |
| Ama87I | CYCGRG | 2 cut(s) | 675, 2198 |
| AoxI | GGCC | 9 cut(s) | 228, 735, 1053, 1213, 1550, 1967, 2302, 2950, 2970 |
| ApaLI | GTGCAC | 1 cut(s) | 1796 |
| ApoI | RAATTY | 6 cut(s) | 428, 456, 1087, 1558, 1865, 2107 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 491, 523, 1010, 1042, 2387, 2419 |
| AsiGI | ACCGGT | 1 cut(s) | 823 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 768, 1469, 2157, 2709 |
| AspLEI | GCGC | 2 cut(s) | 2412, 2913 |
| AspS9I | GGNCC | 4 cut(s) | 1152, 1550, 2056, 2582 |
| AsuHPI | GGTGA | 6 cut(s) | 406, 1183, 1640, 1906, 2228, 2693 |
| AsuII | TTCGAA | 1 cut(s) | 3002 |
| AvaI | CYCGRG | 2 cut(s) | 675, 2198 |
| AvaII | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| AxyI | CCTNAGG | 1 cut(s) | 2139 |
| BaeGI | GKGCMC | 1 cut(s) | 1800 |
| BalI | TGGCCA | 1 cut(s) | 2304 |
| BanI | GGYRCC | 2 cut(s) | 285, 550 |
| BanII | GRGCYC | 3 cut(s) | 265, 564, 1125 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2142, 2174 |
| BauI | CACGAG | 2 cut(s) | 1497, 2577 |
| BbsI | GAAGAC | 4 cut(s) | 473, 719, 999, 2840 |
| Bbv12I | GWGCWC | 3 cut(s) | 265, 1800, 2371 |
| BccI | CCATC | 8 cut(s) | 808, 872, 1102, 1850, 2221, 2557, 2708, 2942 |
| BceAI | ACGGC | 3 cut(s) | 1024, 1710, 2937 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 842, 876 |
| BciT130I | CCWGG | 7 cut(s) | 35, 53, 503, 934, 1251, 2974, 3027 |
| BclI | TGATCA | 2 cut(s) | 388, 1188 |
| BcoDI | GTCTC | 4 cut(s) | 318, 450, 2639, 2795 |
| BfaI | CTAG | 9 cut(s) | 209, 356, 909, 2010, 2463, 2517, 2798, 2904, 2919 |
| BfmI | CTRYAG | 2 cut(s) | 404, 2490 |
| BfrI | CTTAAG | 1 cut(s) | 1057 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2173 |
| BglII | AGATCT | 2 cut(s) | 1072, 1340 |
| Bme1390I | CCNGG | 7 cut(s) | 35, 53, 503, 934, 1251, 2974, 3027 |
| Bme18I | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 296, 2631 |
| BmeT110I | CYCGRG | 2 cut(s) | 675, 2198 |
| BmgT120I | GGNCC | 4 cut(s) | 1152, 1550, 2056, 2582 |
| BmiI | GGNNCC | 6 cut(s) | 287, 552, 822, 1153, 1905, 2758 |
| BmrFI | CCNGG | 7 cut(s) | 35, 53, 503, 934, 1251, 2974, 3027 |
| BmsI | GCATC | 8 cut(s) | 405, 673, 1272, 1302, 1996, 2549, 2582, 2770 |
| BpiI | GAAGAC | 4 cut(s) | 473, 719, 999, 2840 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1752, 1784 |
| BpmI | CTGGAG | 5 cut(s) | 221, 955, 1853, 2198, 2420 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1276 |
| Bpu14I | TTCGAA | 1 cut(s) | 3002 |
| BpuEI | CTTGAG | 6 cut(s) | 54, 165, 980, 1273, 2147, 2441 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1187 |
| BsaJI | CCNNGG | 7 cut(s) | 502, 1011, 1147, 1249, 1624, 2646, 2973 |
| BsaWI | WCCGGW | 3 cut(s) | 823, 1028, 2552 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2748, 2778 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 502, 1254, 1255, 1417, 1630, 2559, 2600, 2753 |
| Bse118I | RCCGGY | 1 cut(s) | 823 |
| Bse1I | ACTGG | 6 cut(s) | 144, 231, 844, 1109, 2733, 2928 |
| Bse21I | CCTNAGG | 1 cut(s) | 2139 |
| Bse3DI | GCAATG | 3 cut(s) | 543, 1578, 1963 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1187 |
| BseBI | CCWGG | 7 cut(s) | 35, 53, 503, 934, 1251, 2974, 3027 |
| BseDI | CCNNGG | 7 cut(s) | 502, 1011, 1147, 1249, 1624, 2646, 2973 |
| BseGI | GGATG | 6 cut(s) | 88, 1113, 2540, 2549, 2953, 3008 |
| BseJI | GATNNNNATC | 1 cut(s) | 1187 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 502, 1254, 1255, 1417, 1630, 2559, 2600, 2753 |
| BseMI | GCAATG | 3 cut(s) | 543, 1578, 1963 |
| BseMII | CTCAG | 3 cut(s) | 1431, 2130, 2481 |
| BseNI | ACTGG | 6 cut(s) | 144, 231, 844, 1109, 2733, 2928 |
| BseRI | GAGGAG | 6 cut(s) | 1499, 1613, 1646, 2442, 2736, 2769 |
| BseSI | GKGCMC | 1 cut(s) | 1800 |
| BseYI | CCCAGC | 1 cut(s) | 2127 |
| BsgI | GTGCAG | 1 cut(s) | 1521 |
| BshFI | GGCC | 9 cut(s) | 230, 737, 1055, 1215, 1552, 1969, 2304, 2952, 2972 |
| BshNI | GGYRCC | 2 cut(s) | 285, 550 |
| BshTI | ACCGGT | 1 cut(s) | 823 |
| BsiHKAI | GWGCWC | 3 cut(s) | 265, 1800, 2371 |
| BsiHKCI | CYCGRG | 2 cut(s) | 675, 2198 |
| BsiSI | CCGG | 3 cut(s) | 824, 1029, 2553 |
| BslFI | GGGAC | 5 cut(s) | 40, 666, 1165, 1231, 1298 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 502, 1254, 1255, 1417, 1630, 2559, 2600, 2753 |
| BsmAI | GTCTC | 4 cut(s) | 318, 450, 2639, 2795 |
| BsmFI | GGGAC | 5 cut(s) | 40, 666, 1165, 1231, 1298 |
| BsnI | GGCC | 9 cut(s) | 230, 737, 1055, 1215, 1552, 1969, 2304, 2952, 2972 |
| BsoBI | CYCGRG | 2 cut(s) | 675, 2198 |
| Bsp119I | TTCGAA | 1 cut(s) | 3002 |
| Bsp1286I | GDGCHC | 5 cut(s) | 265, 564, 1125, 1800, 2371 |
| Bsp1407I | TGTACA | 1 cut(s) | 2221 |
| BspACI | CCGC | 5 cut(s) | 1282, 2027, 2595, 2604, 2969 |
| BspANI | GGCC | 9 cut(s) | 230, 737, 1055, 1215, 1552, 1969, 2304, 2952, 2972 |
| BspCNI | CTCAG | 3 cut(s) | 1432, 2131, 2480 |
| BspHI | TCATGA | 1 cut(s) | 2941 |
| BspLI | GGNNCC | 6 cut(s) | 287, 552, 822, 1153, 1905, 2758 |
| BspMAI | CTGCAG | 1 cut(s) | 2494 |
| BspPI | GGATC | 4 cut(s) | 487, 1266, 2381, 2902 |
| BspT104I | TTCGAA | 1 cut(s) | 3002 |
| BspT107I | GGYRCC | 2 cut(s) | 285, 550 |
| BspTI | CTTAAG | 1 cut(s) | 1057 |
| BsrDI | GCAATG | 3 cut(s) | 543, 1578, 1963 |
| BsrFI | RCCGGY | 1 cut(s) | 823 |
| BsrGI | TGTACA | 1 cut(s) | 2221 |
| BsrI | ACTGG | 6 cut(s) | 144, 231, 844, 1109, 2733, 2928 |
| BssAI | RCCGGY | 1 cut(s) | 823 |
| BssECI | CCNNGG | 7 cut(s) | 502, 1011, 1147, 1249, 1624, 2646, 2973 |
| BssSI | CACGAG | 2 cut(s) | 1497, 2577 |
| BssT1I | CCWWGG | 3 cut(s) | 1011, 1147, 2646 |
| Bst2BI | CACGAG | 2 cut(s) | 1497, 2577 |
| Bst2UI | CCWGG | 7 cut(s) | 35, 53, 503, 934, 1251, 2974, 3027 |
| Bst4CI | ACNGT | 3 cut(s) | 811, 1426, 2536 |
| Bst6I | CTCTTC | 4 cut(s) | 963, 2070, 2126, 2829 |
| BstAFI | CTTAAG | 1 cut(s) | 1057 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 194, 2489 |
| BstAUI | TGTACA | 1 cut(s) | 2221 |
| BstBI | TTCGAA | 1 cut(s) | 3002 |
| BstC8I | GCNNGC | 4 cut(s) | 195, 585, 1971, 2239 |
| BstDEI | CTNAG | 5 cut(s) | 1276, 1440, 2139, 2363, 2467 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1415, 1628, 2751 |
| BstF5I | GGATG | 6 cut(s) | 88, 1113, 2540, 2549, 2953, 3008 |
| BstHHI | GCGC | 2 cut(s) | 2412, 2913 |
| BstMAI | GTCTC | 4 cut(s) | 318, 450, 2639, 2795 |
| BstNI | CCWGG | 7 cut(s) | 35, 53, 503, 934, 1251, 2974, 3027 |
| BstNSI | RCATGY | 4 cut(s) | 454, 523, 852, 2416 |
| BstSCI | CCNGG | 7 cut(s) | 33, 51, 501, 932, 1249, 2972, 3025 |
| BstSFI | CTRYAG | 2 cut(s) | 404, 2490 |
| BstSLI | GKGCMC | 1 cut(s) | 1800 |
| BstV2I | GAAGAC | 4 cut(s) | 473, 719, 999, 2840 |
| BstX2I | RGATCY | 4 cut(s) | 492, 1072, 1340, 2386 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2398 |
| BstYI | RGATCY | 4 cut(s) | 492, 1072, 1340, 2386 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2139 |
| BsuRI | GGCC | 9 cut(s) | 230, 737, 1055, 1215, 1552, 1969, 2304, 2952, 2972 |
| BtsCI | GGATG | 6 cut(s) | 88, 1113, 2540, 2549, 2953, 3008 |
| BtsI | GCAGTG | 2 cut(s) | 2034, 2620 |
| BtsIMutI | CAGTG | 8 cut(s) | 837, 1125, 2034, 2076, 2475, 2532, 2620, 2726 |
| Cac8I | GCNNGC | 4 cut(s) | 195, 585, 1971, 2239 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2474 |
| CciI | TCATGA | 1 cut(s) | 2941 |
| CfoI | GCGC | 2 cut(s) | 2412, 2913 |
| Cfr10I | RCCGGY | 1 cut(s) | 823 |
| Cfr13I | GGNCC | 4 cut(s) | 1152, 1550, 2056, 2582 |
| CseI | GACGC | 1 cut(s) | 149 |
| CsiI | ACCWGGT | 1 cut(s) | 51 |
| Csp6I | GTAC | 6 cut(s) | 250, 308, 843, 1422, 2222, 3034 |
| CspAI | ACCGGT | 1 cut(s) | 823 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2713, 2748, 3001, 3036 |
| CviQI | GTAC | 6 cut(s) | 250, 308, 843, 1422, 2222, 3034 |
| DdeI | CTNAG | 5 cut(s) | 1276, 1440, 2139, 2363, 2467 |
| DriI | GACNNNNNGTC | 2 cut(s) | 296, 2631 |
| EaeI | YGGCCR | 3 cut(s) | 2302, 2950, 2970 |
| Eam1104I | CTCTTC | 4 cut(s) | 963, 2070, 2126, 2829 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 296, 2631 |
| EarI | CTCTTC | 4 cut(s) | 963, 2070, 2126, 2829 |
| Ecl136II | GAGCTC | 1 cut(s) | 263 |
| Eco130I | CCWWGG | 3 cut(s) | 1011, 1147, 2646 |
| Eco147I | AGGCCT | 2 cut(s) | 1055, 1969 |
| Eco24I | GRGCYC | 3 cut(s) | 265, 564, 1125 |
| Eco32I | GATATC | 2 cut(s) | 384, 592 |
| Eco47I | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| Eco53kI | GAGCTC | 1 cut(s) | 263 |
| Eco57I | CTGAAG | 2 cut(s) | 387, 657 |
| Eco81I | CCTNAGG | 1 cut(s) | 2139 |
| Eco88I | CYCGRG | 2 cut(s) | 675, 2198 |
| EcoICRI | GAGCTC | 1 cut(s) | 263 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1415, 1628, 2751 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1152 |
| EcoRI | GAATTC | 1 cut(s) | 1087 |
| EcoRII | CCWGG | 7 cut(s) | 33, 51, 501, 932, 1249, 2972, 3025 |
| EcoRV | GATATC | 2 cut(s) | 384, 592 |
| EcoT14I | CCWWGG | 3 cut(s) | 1011, 1147, 2646 |
| EcoT38I | GRGCYC | 3 cut(s) | 265, 564, 1125 |
| ErhI | CCWWGG | 3 cut(s) | 1011, 1147, 2646 |
| FaqI | GGGAC | 5 cut(s) | 40, 666, 1165, 1231, 1298 |
| FauI | CCCGC | 2 cut(s) | 1275, 2602 |
| FbaI | TGATCA | 2 cut(s) | 388, 1188 |
| FokI | GGATG | 6 cut(s) | 95, 1120, 2527, 2536, 2960, 2995 |
| FriOI | GRGCYC | 3 cut(s) | 265, 564, 1125 |
| FspBI | CTAG | 9 cut(s) | 209, 356, 909, 2010, 2463, 2517, 2798, 2904, 2919 |
| GlaI | GCGC | 2 cut(s) | 2411, 2912 |
| GsaI | CCCAGC | 1 cut(s) | 2131 |
| GsuI | CTGGAG | 5 cut(s) | 221, 955, 1853, 2198, 2420 |
| HaeIII | GGCC | 9 cut(s) | 230, 737, 1055, 1215, 1552, 1969, 2304, 2952, 2972 |
| HapII | CCGG | 3 cut(s) | 824, 1029, 2553 |
| HgaI | GACGC | 1 cut(s) | 149 |
| HhaI | GCGC | 2 cut(s) | 2412, 2913 |
| Hin6I | GCGC | 2 cut(s) | 2410, 2911 |
| HinP1I | GCGC | 2 cut(s) | 2410, 2911 |
| HincII | GTYRAC | 3 cut(s) | 45, 1591, 1606 |
| HindII | GTYRAC | 3 cut(s) | 45, 1591, 1606 |
| HindIII | AAGCTT | 3 cut(s) | 639, 783, 1466 |
| HpaI | GTTAAC | 2 cut(s) | 45, 1591 |
| HpaII | CCGG | 3 cut(s) | 824, 1029, 2553 |
| HphI | GGTGA | 6 cut(s) | 406, 1183, 1640, 1906, 2228, 2693 |
| Hpy166II | GTNNAC | 7 cut(s) | 45, 1591, 1606, 1798, 1842, 2382, 2449 |
| Hpy188I | TCNGA | 9 cut(s) | 388, 596, 1580, 1776, 1849, 1964, 2266, 2526, 2934 |
| Hpy8I | GTNNAC | 7 cut(s) | 45, 1591, 1606, 1798, 1842, 2382, 2449 |
| HpyCH4III | ACNGT | 3 cut(s) | 811, 1426, 2536 |
| HpyCH4IV | ACGT | 3 cut(s) | 727, 2888, 2995 |
| HpyF3I | CTNAG | 5 cut(s) | 1276, 1440, 2139, 2363, 2467 |
| HpySE526I | ACGT | 3 cut(s) | 727, 2888, 2995 |
| HspAI | GCGC | 2 cut(s) | 2410, 2911 |
| Ksp22I | TGATCA | 2 cut(s) | 388, 1188 |
| KspAI | GTTAAC | 2 cut(s) | 45, 1591 |
| LmnI | GCTCC | 5 cut(s) | 10, 1626, 1859, 2429, 2756 |
| LweI | GCATC | 8 cut(s) | 405, 673, 1272, 1302, 1996, 2549, 2582, 2770 |
| MabI | ACCWGGT | 1 cut(s) | 51 |
| MaeI | CTAG | 9 cut(s) | 209, 356, 909, 2010, 2463, 2517, 2798, 2904, 2919 |
| MaeII | ACGT | 3 cut(s) | 727, 2888, 2995 |
| MaeIII | GTNAC | 9 cut(s) | 316, 749, 1405, 1810, 1912, 2470, 2617, 2954, 2982 |
| MfeI | CAATTG | 1 cut(s) | 1712 |
| MflI | RGATCY | 4 cut(s) | 492, 1072, 1340, 2386 |
| MhlI | GDGCHC | 5 cut(s) | 265, 564, 1125, 1800, 2371 |
| MlsI | TGGCCA | 1 cut(s) | 2304 |
| MluNI | TGGCCA | 1 cut(s) | 2304 |
| MlyI | GAGTC | 8 cut(s) | 1253, 1280, 1442, 1647, 1688, 2411, 2664, 2816 |
| MmeI | TCCRAC | 2 cut(s) | 1328, 2912 |
| Mox20I | TGGCCA | 1 cut(s) | 2304 |
| MroXI | GAANNNNTTC | 4 cut(s) | 768, 1469, 2157, 2709 |
| MscI | TGGCCA | 1 cut(s) | 2304 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2946 |
| Msp20I | TGGCCA | 1 cut(s) | 2304 |
| MspA1I | CMGCKG | 1 cut(s) | 1439 |
| MspCI | CTTAAG | 1 cut(s) | 1057 |
| MspI | CCGG | 3 cut(s) | 824, 1029, 2553 |
| MspR9I | CCNGG | 7 cut(s) | 35, 53, 503, 934, 1251, 2974, 3027 |
| MunI | CAATTG | 1 cut(s) | 1712 |
| MvaI | CCWGG | 7 cut(s) | 35, 53, 503, 934, 1251, 2974, 3027 |
| NlaIV | GGNNCC | 6 cut(s) | 287, 552, 822, 1153, 1905, 2758 |
| NmuCI | GTSAC | 6 cut(s) | 749, 1912, 2470, 2617, 2954, 2982 |
| NspI | RCATGY | 4 cut(s) | 454, 523, 852, 2416 |
| NspV | TTCGAA | 1 cut(s) | 3002 |
| PaeR7I | CTCGAG | 2 cut(s) | 675, 2198 |
| PagI | TCATGA | 1 cut(s) | 2941 |
| PceI | AGGCCT | 2 cut(s) | 1055, 1969 |
| PdmI | GAANNNNTTC | 4 cut(s) | 768, 1469, 2157, 2709 |
| PfeI | GAWTC | 8 cut(s) | 176, 267, 1939, 1992, 2081, 2089, 2527, 2738 |
| PfoI | TCCNGGA | 1 cut(s) | 932 |
| PinAI | ACCGGT | 1 cut(s) | 823 |
| PleI | GAGTC | 8 cut(s) | 1252, 1280, 1441, 1646, 1687, 2410, 2664, 2816 |
| PpsI | GAGTC | 8 cut(s) | 1252, 1280, 1441, 1646, 1687, 2410, 2664, 2816 |
| PpuMI | RGGWCCY | 1 cut(s) | 1152 |
| PsiI | TTATAA | 1 cut(s) | 1136 |
| Psp124BI | GAGCTC | 1 cut(s) | 265 |
| Psp1406I | AACGTT | 1 cut(s) | 2995 |
| Psp5II | RGGWCCY | 1 cut(s) | 1152 |
| Psp6I | CCWGG | 7 cut(s) | 33, 51, 501, 932, 1249, 2972, 3025 |
| PspFI | CCCAGC | 1 cut(s) | 2127 |
| PspGI | CCWGG | 7 cut(s) | 33, 51, 501, 932, 1249, 2972, 3025 |
| PspN4I | GGNNCC | 6 cut(s) | 287, 552, 822, 1153, 1905, 2758 |
| PspPI | GGNCC | 4 cut(s) | 1152, 1550, 2056, 2582 |
| PspPPI | RGGWCCY | 1 cut(s) | 1152 |
| PstI | CTGCAG | 1 cut(s) | 2494 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2474 |
| PsuI | RGATCY | 4 cut(s) | 492, 1072, 1340, 2386 |
| PvuII | CAGCTG | 1 cut(s) | 1439 |
| RsaI | GTAC | 6 cut(s) | 251, 309, 844, 1423, 2223, 3035 |
| RsaNI | GTAC | 6 cut(s) | 250, 308, 843, 1422, 2222, 3034 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2946 |
| SacI | GAGCTC | 1 cut(s) | 265 |
| Sau96I | GGNCC | 4 cut(s) | 1152, 1550, 2056, 2582 |
| SchI | GAGTC | 8 cut(s) | 1253, 1280, 1442, 1647, 1688, 2411, 2664, 2816 |
| ScrFI | CCNGG | 7 cut(s) | 35, 53, 503, 934, 1251, 2974, 3027 |
| SduI | GDGCHC | 5 cut(s) | 265, 564, 1125, 1800, 2371 |
| SexAI | ACCWGGT | 1 cut(s) | 51 |
| SfaNI | GCATC | 8 cut(s) | 405, 673, 1272, 1302, 1996, 2549, 2582, 2770 |
| SfcI | CTRYAG | 2 cut(s) | 404, 2490 |
| Sfr274I | CTCGAG | 2 cut(s) | 675, 2198 |
| SfuI | TTCGAA | 1 cut(s) | 3002 |
| SinI | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| SlaI | CTCGAG | 2 cut(s) | 675, 2198 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2946 |
| SmlI | CTYRAG | 9 cut(s) | 69, 180, 675, 995, 1057, 1288, 2162, 2198, 2456 |
| SmoI | CTYRAG | 9 cut(s) | 69, 180, 675, 995, 1057, 1288, 2162, 2198, 2456 |
| SseBI | AGGCCT | 2 cut(s) | 1055, 1969 |
| SsiI | CCGC | 5 cut(s) | 1282, 2027, 2595, 2604, 2969 |
| SspI | AATATT | 1 cut(s) | 2938 |
| SspMI | CTAG | 9 cut(s) | 209, 356, 909, 2010, 2463, 2517, 2798, 2904, 2919 |
| SstI | GAGCTC | 1 cut(s) | 265 |
| StuI | AGGCCT | 2 cut(s) | 1055, 1969 |
| StyD4I | CCNGG | 7 cut(s) | 33, 51, 501, 932, 1249, 2972, 3025 |
| StyI | CCWWGG | 3 cut(s) | 1011, 1147, 2646 |
| TaaI | ACNGT | 3 cut(s) | 811, 1426, 2536 |
| TaiI | ACGT | 3 cut(s) | 730, 2891, 2998 |
| TatI | WGTACW | 2 cut(s) | 249, 2221 |
| TauI | GCSGC | 1 cut(s) | 2972 |
| TfiI | GAWTC | 8 cut(s) | 176, 267, 1939, 1992, 2081, 2089, 2527, 2738 |
| TscAI | CASTG | 8 cut(s) | 844, 1132, 2041, 2083, 2475, 2539, 2620, 2733 |
| TseFI | GTSAC | 6 cut(s) | 749, 1912, 2470, 2617, 2954, 2982 |
| Tsp45I | GTSAC | 6 cut(s) | 749, 1912, 2470, 2617, 2954, 2982 |
| TspDTI | ATGAA | 8 cut(s) | 1338, 1478, 1839, 1893, 1976, 2357, 2706, 2930 |
| TspRI | CASTG | 8 cut(s) | 844, 1132, 2041, 2083, 2475, 2539, 2620, 2733 |
| Vha464I | CTTAAG | 1 cut(s) | 1057 |
| VneI | GTGCAC | 1 cut(s) | 1796 |
| VpaK11BI | GGWCC | 3 cut(s) | 1152, 2056, 2582 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1415, 1628, 2751 |
| XapI | RAATTY | 6 cut(s) | 428, 456, 1087, 1558, 1865, 2107 |
| XceI | RCATGY | 4 cut(s) | 454, 523, 852, 2416 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1018, 2556 |
| XhoI | CTCGAG | 2 cut(s) | 675, 2198 |
| XmnI | GAANNNNTTC | 4 cut(s) | 768, 1469, 2157, 2709 |
| XspI | CTAG | 9 cut(s) | 209, 356, 909, 2010, 2463, 2517, 2798, 2904, 2919 |