FvH4_4g02490

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017280
Physical Location & Seq
Reverse (-)
2283004 .. 2285002
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02490.t4

Sequence Viewer

Length: 942 bp
ATGATGAAACTTGACGGTTTGTTCATAATCGAACTATTTCGGAAGCTTTGTTTTAGTGAAGATATTAGCATCAATGACCCCGTCTTCAACATGGATTTCATGTTTCAGTATTTATGCCATGACCTTTTGCTACTAGAGAATCAGCTTCCTTGGTTTGTTCTCAACTCTTTACATATCCTTACGAAGGAGGTTGTTGATTGCTCCCTCAAAAGACTCTTGCTTGTCATCTTTTACTCAGAACCACAATTGGGGCTTAACAGCAAGCGCTTCATAGATCATAATACAATTTTCCTCGACACCGACTTTGATCATAATCATGATCACGATGACAAAATTTTGCACATACTTGACCTCATAAGAATTTCAAGTGTTTTCAAATTCAAAGAAGATCAATTTCAGCAATCTTTTTATGGTCCTGAAACGCAACTGAAAATGCATCCAACTACTACTCTCTCAGACGTCGCAAGTGACGGTGACAGCATAGTGAACATAGAATTGGAAGACAGGGTTTATAACAATTTTCGCCCGCCTTTCTACGGCCTTAAGACACAATTTATGCATCCTGCCACTACCCTATCAGAGGCAGGAGTAGTGTTCAGAATGGATTCCAGTGATAGGAATATCATAACATATATAGAATTCGAAGATGGAGTGTTTACGATTCCACCACTAGTCATTGGAGAGTTGACAGAATCACTATTCAGGAACTTGATTGCATTTGAGCAATGCTATCATGGATGTGCGCAGAAAGTAACTTCATATGTTGTTTTGATGGACAACCTCATCGCTTCGCAAAAGGATATGAATTTGTTTTGTGAGAAAAACATAATAACTACTAATTGGCGGAGTGCTGATTTAAAAGCGTACCAATTCTTCAACAAGCTTTACAATGATACCTCGCTTAAGGAGTTCTTGTATGACGGACTGCTACCAAGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

314

Amino Acids

36.55

Weight (kDa)

4.9

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 307 1.4e-55 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017280)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02490 FvH4_4g02490 FvH4_4g02490 FvH4_4g02490 FvH4_4g02490
rosa_chinensis RchiOBHm_Chr4g0389931
rosa_laevigata RLG00000009944 RLG00000015347
rosa_multiflora Rmu_sc0004336.1_g000027
rosa_roxburghii Rroxscaffold_5G00336000
rosa_rugosa Rorug03G0327200
rosa_samantha Rh4DG024100
rosa_wichuraiana Rw4G002310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AatII GACGTC 1 cut(s) 462
Acc16I TGCGCA 1 cut(s) 744
AciI CCGC 2 cut(s) 527, 844
AcsI RAATTY 5 cut(s) 333, 360, 377, 638, 805
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 866
AfeI AGCGCT 1 cut(s) 266
AfiI CCNNNNNNNGG 5 cut(s) 184, 248, 536, 580, 615
AflII CTTAAG 2 cut(s) 542, 902
AgsI TTSAA 5 cut(s) 88, 366, 376, 382, 877
AhlI ACTAGT 1 cut(s) 670
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AluBI AGCT 3 cut(s) 46, 145, 883
AluI AGCT 3 cut(s) 46, 145, 883
Aor51HI AGCGCT 1 cut(s) 266
AoxI GGCC 1 cut(s) 538
ApoI RAATTY 5 cut(s) 333, 360, 377, 638, 805
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 2 cut(s) 36, 604
AspLEI GCGC 2 cut(s) 267, 745
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 485
AsuII TTCGAA 1 cut(s) 642
AvaII GGWCC 1 cut(s) 413
BarI GAAGNNNNNNTAC 2 cut(s) 857, 889
BbsI GAAGAC 2 cut(s) 76, 507
BccI CCATC 2 cut(s) 641, 766
BceAI ACGGC 1 cut(s) 553
BclI TGATCA 2 cut(s) 307, 319
BcuI ACTAGT 1 cut(s) 670
BfaI CTAG 2 cut(s) 134, 671
BfoI RGCGCY 1 cut(s) 268
BfrI CTTAAG 2 cut(s) 542, 902
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmsI GCATC 3 cut(s) 78, 445, 568
BpiI GAAGAC 2 cut(s) 76, 507
Bpu14I TTCGAA 1 cut(s) 642
BsaBI GATNNNNATC 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 248, 536, 580, 615
Bse1I ACTGG 1 cut(s) 609
Bse3DI GCAATG 1 cut(s) 731
Bse8I GATNNNNATC 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 3 cut(s) 436, 559, 743
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 5 cut(s) 184, 248, 536, 580, 615
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 2 cut(s) 249, 468
BseNI ACTGG 1 cut(s) 609
BshFI GGCC 1 cut(s) 540
BslI CCNNNNNNNGG 5 cut(s) 184, 248, 536, 580, 615
BsnI GGCC 1 cut(s) 540
Bsp119I TTCGAA 1 cut(s) 642
Bsp143I GATC 4 cut(s) 274, 307, 319, 388
BspACI CCGC 2 cut(s) 527, 844
BspANI GGCC 1 cut(s) 540
BspCNI CTCAG 2 cut(s) 248, 467
BspHI TCATGA 1 cut(s) 316
BspT104I TTCGAA 1 cut(s) 642
BspTI CTTAAG 2 cut(s) 542, 902
BsrDI GCAATG 1 cut(s) 731
BsrI ACTGG 1 cut(s) 609
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 4 cut(s) 274, 307, 319, 388
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 17, 473
BstACI GRCGYC 1 cut(s) 459
BstAFI CTTAAG 2 cut(s) 542, 902
BstBI TTCGAA 1 cut(s) 642
BstC8I GCNNGC 2 cut(s) 263, 527
BstDEI CTNAG 2 cut(s) 235, 454
BstENI CCTNNNNNAGG 2 cut(s) 182, 578
BstF5I GGATG 3 cut(s) 436, 559, 743
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 2 cut(s) 267, 745
BstKTI GATC 4 cut(s) 277, 310, 322, 391
BstMBI GATC 4 cut(s) 274, 307, 319, 388
BstV2I GAAGAC 2 cut(s) 76, 507
BsuRI GGCC 1 cut(s) 540
BtgZI GCGATG 1 cut(s) 769
BtsCI GGATG 3 cut(s) 436, 559, 743
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 263, 527
CciI TCATGA 1 cut(s) 316
CfoI GCGC 2 cut(s) 267, 745
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 865
CviAII CATG 5 cut(s) 91, 100, 119, 317, 734
CviJI RGCY 5 cut(s) 46, 145, 253, 540, 883
CviKI_1 RGCY 5 cut(s) 46, 145, 253, 540, 883
CviQI GTAC 1 cut(s) 865
DdeI CTNAG 2 cut(s) 235, 454
DpnI GATC 4 cut(s) 276, 309, 321, 390
DpnII GATC 4 cut(s) 274, 307, 319, 388
DraI TTTAAA 1 cut(s) 858
EciI GGCGGA 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 413
Eco47III AGCGCT 1 cut(s) 266
EcoNI CCTNNNNNAGG 2 cut(s) 182, 578
EcoRI GAATTC 1 cut(s) 638
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 2 cut(s) 438, 561
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 5 cut(s) 94, 103, 122, 320, 737
FalI AAGNNNNNCTT 2 cut(s) 896, 928
FatI CATG 5 cut(s) 90, 99, 118, 316, 733
FauI CCCGC 1 cut(s) 534
FauNDI CATATG 1 cut(s) 760
FbaI TGATCA 2 cut(s) 307, 319
FokI GGATG 3 cut(s) 423, 546, 750
FspBI CTAG 2 cut(s) 134, 671
FspI TGCGCA 1 cut(s) 744
GlaI GCGC 2 cut(s) 266, 744
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 1 cut(s) 540
HhaI GCGC 2 cut(s) 267, 745
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 5 cut(s) 94, 103, 122, 320, 737
Hin6I GCGC 2 cut(s) 265, 743
HinP1I GCGC 2 cut(s) 265, 743
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HindIII AAGCTT 2 cut(s) 44, 881
HinfI GANTC 5 cut(s) 139, 213, 605, 661, 692
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 3 cut(s) 487, 657, 687
Hpy188I TCNGA 5 cut(s) 42, 238, 457, 580, 599
Hpy188III TCNNGA 4 cut(s) 317, 323, 416, 703
Hpy8I GTNNAC 3 cut(s) 487, 657, 687
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 17, 473
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 4 cut(s) 340, 436, 559, 716
HpyF3I CTNAG 2 cut(s) 235, 454
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 5 cut(s) 94, 103, 122, 320, 737
HspAI GCGC 2 cut(s) 265, 743
Ksp22I TGATCA 2 cut(s) 307, 319
Kzo9I GATC 4 cut(s) 274, 307, 319, 388
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 6 cut(s) 429, 490, 570, 576, 622, 688
LweI GCATC 3 cut(s) 78, 445, 568
MaeI CTAG 2 cut(s) 134, 671
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 3 cut(s) 467, 473, 751
MalI GATC 4 cut(s) 276, 309, 321, 390
MboI GATC 4 cut(s) 274, 307, 319, 388
MboII GAAGA 6 cut(s) 71, 76, 398, 512, 656, 865
MfeI CAATTG 1 cut(s) 245
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 7 cut(s) 181, 215, 302, 362, 574, 791, 907
Mph1103I ATGCAT 2 cut(s) 438, 561
MroXI GAANNNNTTC 2 cut(s) 36, 604
MseI TTAA 4 cut(s) 255, 543, 857, 903
MslI CAYNNNNRTG 2 cut(s) 315, 738
MspCI CTTAAG 2 cut(s) 542, 902
MunI CAATTG 1 cut(s) 245
NdeI CATATG 1 cut(s) 760
NdeII GATC 4 cut(s) 274, 307, 319, 388
NlaIII CATG 5 cut(s) 94, 103, 122, 320, 737
NmuCI GTSAC 2 cut(s) 467, 473
NsbI TGCGCA 1 cut(s) 744
NsiI ATGCAT 2 cut(s) 438, 561
NspV TTCGAA 1 cut(s) 642
PagI TCATGA 1 cut(s) 316
PdmI GAANNNNTTC 2 cut(s) 36, 604
PfeI GAWTC 4 cut(s) 139, 605, 661, 692
PflFI GACNNNGTC 1 cut(s) 80
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PsiI TTATAA 1 cut(s) 513
PspPI GGNCC 1 cut(s) 413
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
RseI CAYNNNNRTG 2 cut(s) 315, 738
SaqAI TTAA 4 cut(s) 255, 543, 857, 903
Sau3AI GATC 4 cut(s) 274, 307, 319, 388
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 207
SetI ASST 9 cut(s) 48, 126, 147, 192, 354, 462, 783, 885, 899
SfaNI GCATC 3 cut(s) 78, 445, 568
SfuI TTCGAA 1 cut(s) 642
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 2 cut(s) 315, 738
SmlI CTYRAG 2 cut(s) 542, 902
SmoI CTYRAG 2 cut(s) 542, 902
SpeI ACTAGT 1 cut(s) 670
SsiI CCGC 2 cut(s) 527, 844
SspMI CTAG 2 cut(s) 134, 671
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 17, 473
TaiI ACGT 1 cut(s) 462
TaqI TCGA 3 cut(s) 30, 294, 642
TfiI GAWTC 4 cut(s) 139, 605, 661, 692
Tru1I TTAA 4 cut(s) 255, 543, 857, 903
Tru9I TTAA 4 cut(s) 255, 543, 857, 903
TscAI CASTG 1 cut(s) 616
TseFI GTSAC 2 cut(s) 467, 473
Tsp45I GTSAC 2 cut(s) 467, 473
TspDTI ATGAA 6 cut(s) 13, 20, 88, 259, 747, 818
TspGWI ACGGA 1 cut(s) 936
TspRI CASTG 1 cut(s) 616
Tth111I GACNNNGTC 1 cut(s) 80
Vha464I CTTAAG 2 cut(s) 542, 902
VpaK11BI GGWCC 1 cut(s) 413
XagI CCTNNNNNAGG 2 cut(s) 182, 578
XapI RAATTY 5 cut(s) 333, 360, 377, 638, 805
XmnI GAANNNNTTC 2 cut(s) 36, 604
XspI CTAG 2 cut(s) 134, 671
ZraI GACGTC 1 cut(s) 460
Zsp2I ATGCAT 2 cut(s) 438, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.