Rmu_sc0004336.1_g000027

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004336.1
OG0017280
Physical Location & Seq
Forward (+)
109967 .. 111487
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004336.1_g000027.1.cds

Sequence Viewer

Length: 1299 bp
atggaagacgataaagaaatcaatgttgaagcattggaaaacaacattagtgcaaagcttcactgtgattcacccctgtctgccaagtgctgcattttcagagttcctcaggttattaggagacaaaatccaaaggcatatcaacctgatgttgtcacaattggaccctttcatgatcgaggcagtaaacacttccaacccatggaaaatgtgaagctctggtatttgcgtaaccatctcttgcgcaagaatataactttgaaaacgttaattcaaggcattaatattatcgagtttgagaaacatgcccgtgagttttatgcagaaccacttgatcatctaaacaagaatgacttcattgaaatgatgatacttgatgaaccacaactgggacttaactccaatcgcttcatagatcataataccattttcctagacactgactttgatgatgatcctgatcatgatgacaaaattttgcacatacttgacctcataagaacttcaagtgttttcaaattcaaagatgatcggtttcagcaatctttctacggtcctaacacgcaattgaaaatacatctgactactactctctcagacgtcgcaagtgacatcagtgacagcatagtgaatatagaattggaagacagagtttataacaattttcacccgccatcctacggccttaagacacagtttatgcatccggccactactctatcagaggcaggagtcgtattcagaatggattccggcgataggaagagcataatggacatagaattcgaagatggagtgtttactattccaccactagtcattggagagttgacagaatcactcttcaggaacttgattgcatttgagcaatgctatcatggatgttcgcataaaataacttcatatgtggttctaatggataacctcatcgcttcacaaaaggatatgaatttgctttgtgagaaaaacataataactactaattggcggagtgctgaattagacacgtatcaattcttcaacaagctttataaggacacctcgcttaaggagttcttgtatgatggactgtgctaccaagtaaatgaacattaccaagttgcacaggacaaaaagcttcaaagaatgaggcgcgagctaagaactactgcacagttgaagcgtgattatctaacgtggaatgttacttcaacaagcctctggaaagttacttctttgattgcagcttctgtccttttgggagtcactataattcaaaccatatatgccatgaagcaatattattattcccctcgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

432

Amino Acids

50.4

Weight (kDa)

5.77

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017280)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02490 FvH4_4g02490 FvH4_4g02490 FvH4_4g02490 FvH4_4g02490
rosa_chinensis RchiOBHm_Chr4g0389931
rosa_laevigata RLG00000009944 RLG00000015347
rosa_multiflora Rmu_sc0004336.1_g000027
rosa_roxburghii Rroxscaffold_5G00336000
rosa_rugosa Rorug03G0327200
rosa_samantha Rh4DG024100
rosa_wichuraiana Rw4G002310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 657, 1032
AatII GACGTC 1 cut(s) 603
Acc16I TGCGCA 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 202
AccII CGCG 1 cut(s) 1134
AciI CCGC 2 cut(s) 671, 988
AclI AACGTT 1 cut(s) 266
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 4 cut(s) 474, 518, 782, 949
AcuI CTGAAG 1 cut(s) 829
AcyI GRCGYC 1 cut(s) 600
AfiI CCNNNNNNNGG 4 cut(s) 202, 389, 680, 759
AflII CTTAAG 2 cut(s) 686, 1046
AflIII ACRYGT 1 cut(s) 1005
AhlI ACTAGT 1 cut(s) 814
AjuI GAANNNNNNNTTGG 2 cut(s) 623, 655
AluBI AGCT 6 cut(s) 58, 217, 1027, 1117, 1138, 1226
AluI AGCT 6 cut(s) 58, 217, 1027, 1117, 1138, 1226
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 1229
AoxI GGCC 2 cut(s) 682, 708
ApeKI GCWGC 2 cut(s) 90, 1223
ApoI RAATTY 4 cut(s) 474, 518, 782, 949
ArsI GACNNNNNNTTYG 4 cut(s) 428, 460, 767, 799
AseI ATTAAT 1 cut(s) 282
Asp700I GAANNNNTTC 2 cut(s) 353, 748
AspLEI GCGC 2 cut(s) 246, 1134
AspS9I GGNCC 2 cut(s) 164, 554
AsuHPI GGTGA 2 cut(s) 63, 659
AsuII TTCGAA 1 cut(s) 786
AvaII GGWCC 2 cut(s) 164, 554
AxyI CCTNAGG 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 1001, 1033
BbsI GAAGAC 2 cut(s) 12, 651
BbvI GCAGC 2 cut(s) 77, 1235
BccI CCATC 4 cut(s) 243, 682, 785, 1058
BceAI ACGGC 1 cut(s) 697
BclI TGATCA 2 cut(s) 334, 460
BcoDI GTCTC 1 cut(s) 115
BcuI ACTAGT 1 cut(s) 814
BfaI CTAG 2 cut(s) 434, 815
BfrI CTTAAG 2 cut(s) 686, 1046
BisI GCNGC 2 cut(s) 91, 1224
BlsI GCNGC 2 cut(s) 92, 1225
Bme18I GGWCC 2 cut(s) 164, 554
BmgT120I GGNCC 2 cut(s) 164, 554
BmiI GGNNCC 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 398
BmsI GCATC 1 cut(s) 712
BmuI ACTGGG 1 cut(s) 398
BpiI GAAGAC 2 cut(s) 12, 651
Bpu14I TTCGAA 1 cut(s) 786
BsaAI YACGTR 1 cut(s) 1008
BsaBI GATNNNNATC 2 cut(s) 453, 459
BsaHI GRCGYC 1 cut(s) 600
BsaJI CCNNGG 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 1043, 1073
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 389, 680, 759
Bse1I ACTGG 1 cut(s) 393
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 875
Bse8I GATNNNNATC 2 cut(s) 453, 459
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 3 cut(s) 674, 703, 887
BseJI GATNNNNATC 2 cut(s) 453, 459
BseLI CCNNNNNNNGG 4 cut(s) 202, 389, 680, 759
BseMI GCAATG 1 cut(s) 875
BseMII CTCAG 2 cut(s) 122, 609
BseNI ACTGG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 77, 1235
BsgI GTGCAG 1 cut(s) 1134
Bsh1236I CGCG 1 cut(s) 1134
BshFI GGCC 2 cut(s) 684, 710
BsiSI CCGG 2 cut(s) 707, 753
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 4 cut(s) 202, 389, 680, 759
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 2 cut(s) 684, 710
Bsp119I TTCGAA 1 cut(s) 786
Bsp143I GATC 6 cut(s) 175, 334, 415, 454, 460, 529
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 2 cut(s) 671, 988
BspANI GGCC 2 cut(s) 684, 710
BspCNI CTCAG 2 cut(s) 121, 608
BspFNI CGCG 1 cut(s) 1134
BspHI TCATGA 2 cut(s) 172, 463
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 1 cut(s) 449
BspQI GCTCTTC 1 cut(s) 758
BspT104I TTCGAA 1 cut(s) 786
BspTI CTTAAG 2 cut(s) 686, 1046
BsrDI GCAATG 1 cut(s) 875
BsrI ACTGG 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 6 cut(s) 175, 334, 415, 454, 460, 529
BssNI GRCGYC 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 5 cut(s) 65, 554, 696, 1071, 1155
Bst6I CTCTTC 2 cut(s) 758, 848
BstACI GRCGYC 1 cut(s) 600
BstAFI CTTAAG 2 cut(s) 686, 1046
BstBAI YACGTR 1 cut(s) 1008
BstBI TTCGAA 1 cut(s) 786
BstC8I GCNNGC 1 cut(s) 1136
BstDEI CTNAG 3 cut(s) 108, 595, 1139
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 3 cut(s) 674, 703, 887
BstFNI CGCG 1 cut(s) 1134
BstHHI GCGC 2 cut(s) 246, 1134
BstKTI GATC 6 cut(s) 178, 337, 418, 457, 463, 532
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 6 cut(s) 175, 334, 415, 454, 460, 529
BstNSI RCATGY 1 cut(s) 308
BstUI CGCG 1 cut(s) 1134
BstV1I GCAGC 2 cut(s) 77, 1235
BstV2I GAAGAC 2 cut(s) 12, 651
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 684, 710
BtgI CCRYGG 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 913
BtsCI GGATG 3 cut(s) 674, 703, 887
BtsIMutI CAGTG 3 cut(s) 61, 438, 622
Cac8I GCNNGC 1 cut(s) 1136
CaiI CAGNNNCTG 1 cut(s) 1229
CciI TCATGA 2 cut(s) 172, 463
CfoI GCGC 2 cut(s) 246, 1134
Cfr13I GGNCC 2 cut(s) 164, 554
CviAII CATG 6 cut(s) 173, 202, 305, 464, 878, 1270
CviJI RGCY 9 cut(s) 58, 217, 684, 710, 1027, 1117, 1138, 1197, 1226
CviKI_1 RGCY 9 cut(s) 58, 217, 684, 710, 1027, 1117, 1138, 1197, 1226
DdeI CTNAG 3 cut(s) 108, 595, 1139
DpnI GATC 6 cut(s) 177, 336, 417, 456, 462, 531
DpnII GATC 6 cut(s) 175, 334, 415, 454, 460, 529
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 2 cut(s) 758, 848
EarI CTCTTC 2 cut(s) 758, 848
EciI GGCGGA 1 cut(s) 1003
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 164, 554
Eco57I CTGAAG 1 cut(s) 829
Eco81I CCTNAGG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 782
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 6 cut(s) 176, 205, 308, 467, 881, 1273
FalI AAGNNNNNCTT 4 cut(s) 338, 370, 1040, 1072
FaqI GGGAC 1 cut(s) 405
FatI CATG 6 cut(s) 172, 201, 304, 463, 877, 1269
FauI CCCGC 1 cut(s) 678
FauNDI CATATG 1 cut(s) 904
FbaI TGATCA 2 cut(s) 334, 460
Fnu4HI GCNGC 2 cut(s) 91, 1224
FokI GGATG 3 cut(s) 661, 690, 894
Fsp4HI GCNGC 2 cut(s) 91, 1224
FspBI CTAG 2 cut(s) 434, 815
FspI TGCGCA 1 cut(s) 245
GlaI GCGC 2 cut(s) 245, 1133
GluI GCNGC 2 cut(s) 91, 1224
HaeIII GGCC 2 cut(s) 684, 710
HapII CCGG 2 cut(s) 707, 753
HhaI GCGC 2 cut(s) 246, 1134
Hin1I GRCGYC 1 cut(s) 600
Hin1II CATG 6 cut(s) 176, 205, 308, 467, 881, 1273
Hin6I GCGC 2 cut(s) 244, 1132
HinP1I GCGC 2 cut(s) 244, 1132
HincII GTYRAC 1 cut(s) 831
HindII GTYRAC 1 cut(s) 831
HindIII AAGCTT 3 cut(s) 56, 1025, 1115
HinfI GANTC 5 cut(s) 68, 732, 749, 836, 1242
HpaII CCGG 2 cut(s) 707, 753
HphI GGTGA 2 cut(s) 63, 659
Hpy166II GTNNAC 3 cut(s) 188, 801, 831
Hpy188I TCNGA 5 cut(s) 101, 582, 598, 724, 743
Hpy188III TCNNGA 5 cut(s) 173, 458, 464, 847, 1201
Hpy8I GTNNAC 3 cut(s) 188, 801, 831
Hpy99I CGWCG 1 cut(s) 605
HpyCH4III ACNGT 5 cut(s) 65, 554, 696, 1071, 1155
HpyCH4IV ACGT 4 cut(s) 266, 600, 1007, 1175
HpyCH4V TGCA 9 cut(s) 53, 93, 323, 481, 703, 860, 1103, 1151, 1223
HpyF3I CTNAG 3 cut(s) 108, 595, 1139
HpySE526I ACGT 4 cut(s) 266, 600, 1007, 1175
Hsp92I GRCGYC 1 cut(s) 600
Hsp92II CATG 6 cut(s) 176, 205, 308, 467, 881, 1273
HspAI GCGC 2 cut(s) 244, 1132
Ksp22I TGATCA 2 cut(s) 334, 460
Kzo9I GATC 6 cut(s) 175, 334, 415, 454, 460, 529
LguI GCTCTTC 1 cut(s) 758
Lsp1109I GCAGC 2 cut(s) 77, 1235
LweI GCATC 1 cut(s) 712
MaeI CTAG 2 cut(s) 434, 815
MaeII ACGT 4 cut(s) 266, 600, 1007, 1175
MaeIII GTNAC 7 cut(s) 154, 230, 608, 617, 1183, 1207, 1243
MalI GATC 6 cut(s) 177, 336, 417, 456, 462, 531
MboI GATC 6 cut(s) 175, 334, 415, 454, 460, 529
MboII GAAGA 6 cut(s) 17, 656, 775, 800, 835, 1009
MfeI CAATTG 2 cut(s) 159, 566
MlyI GAGTC 2 cut(s) 741, 1251
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 8 cut(s) 117, 173, 503, 718, 935, 1051, 1122, 1208
Mph1103I ATGCAT 1 cut(s) 705
MroXI GAANNNNTTC 2 cut(s) 353, 748
MseI TTAA 5 cut(s) 269, 282, 396, 687, 1047
MslI CAYNNNNRTG 2 cut(s) 309, 362
MspCI CTTAAG 2 cut(s) 686, 1046
MspI CCGG 2 cut(s) 707, 753
MunI CAATTG 2 cut(s) 159, 566
MvnI CGCG 1 cut(s) 1134
NcoI CCATGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 904
NdeII GATC 6 cut(s) 175, 334, 415, 454, 460, 529
NlaIII CATG 6 cut(s) 176, 205, 308, 467, 881, 1273
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 4 cut(s) 154, 608, 617, 1243
NsbI TGCGCA 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 1 cut(s) 308
NspV TTCGAA 1 cut(s) 786
PagI TCATGA 2 cut(s) 172, 463
PciSI GCTCTTC 1 cut(s) 758
PdmI GAANNNNTTC 2 cut(s) 353, 748
PfeI GAWTC 3 cut(s) 68, 749, 836
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 2 cut(s) 92, 1225
PleI GAGTC 2 cut(s) 740, 1250
PpsI GAGTC 2 cut(s) 740, 1250
Ppu21I YACGTR 1 cut(s) 1008
PshBI ATTAAT 1 cut(s) 282
PsiI TTATAA 2 cut(s) 657, 1032
Psp1406I AACGTT 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 2 cut(s) 164, 554
PstNI CAGNNNCTG 1 cut(s) 1229
RseI CAYNNNNRTG 2 cut(s) 309, 362
SapI GCTCTTC 1 cut(s) 758
SaqAI TTAA 5 cut(s) 269, 282, 396, 687, 1047
SatI GCNGC 2 cut(s) 91, 1224
Sau3AI GATC 6 cut(s) 175, 334, 415, 454, 460, 529
Sau96I GGNCC 2 cut(s) 164, 554
SchI GAGTC 2 cut(s) 741, 1251
SfaNI GCATC 1 cut(s) 712
SfuI TTCGAA 1 cut(s) 786
SinI GGWCC 2 cut(s) 164, 554
SmiMI CAYNNNNRTG 2 cut(s) 309, 362
SmlI CTYRAG 2 cut(s) 686, 1046
SmoI CTYRAG 2 cut(s) 686, 1046
SpeI ACTAGT 1 cut(s) 814
SsiI CCGC 2 cut(s) 671, 988
SspI AATATT 2 cut(s) 286, 1280
SspMI CTAG 2 cut(s) 434, 815
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 5 cut(s) 65, 554, 696, 1071, 1155
TaiI ACGT 4 cut(s) 269, 603, 1010, 1178
TaqI TCGA 4 cut(s) 178, 291, 786, 1294
TfiI GAWTC 3 cut(s) 68, 749, 836
Tru1I TTAA 5 cut(s) 269, 282, 396, 687, 1047
Tru9I TTAA 5 cut(s) 269, 282, 396, 687, 1047
TscAI CASTG 3 cut(s) 68, 445, 622
TseFI GTSAC 4 cut(s) 154, 608, 617, 1243
TseI GCWGC 2 cut(s) 90, 1223
Tsp45I GTSAC 4 cut(s) 154, 608, 617, 1243
TspDTI ATGAA 8 cut(s) 161, 346, 393, 400, 891, 962, 1101, 1286
TspRI CASTG 3 cut(s) 68, 445, 622
Van91I CCANNNNNTGG 1 cut(s) 202
Vha464I CTTAAG 2 cut(s) 686, 1046
VpaK11BI GGWCC 2 cut(s) 164, 554
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 4 cut(s) 474, 518, 782, 949
XceI RCATGY 1 cut(s) 308
XmnI GAANNNNTTC 2 cut(s) 353, 748
XspI CTAG 2 cut(s) 434, 815
ZraI GACGTC 1 cut(s) 601
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.