Rroxscaffold_5G00336000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017280
Physical Location & Seq
Reverse (-)
3745825 .. 3751403
5579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336000.1

Sequence Viewer

Length: 1197 bp
ATGTTGATGCATTGGAAAACAACATTAGTGCAAAGCTTCACTGTGATTCACCCGTCTGCCAAGTGCTGCATTTTCAGAGTTCCTCAGGTTATTAGGAGACAAAATCCAAAGGCCTATCAACCTGATGTTGTGACAATTGGACCCTTTCATGATCGAGGCAGTAAACACTTCCACCCCATGGAAAATGTGAAGCTCTGGTATTTGCGTAACCTTCTCTTGCGCAAGAATATAACTTTGAAAACGTTAATTCAAGGCATTAATATTATCGAGTTTGAGAAACATGCCCGTGAGTTTTATGCAGAACCACTTGATCATCTAAACAAGAATGACTTCATTGAAATGATGATACTTGATGAACCACAACTGGGACTTAACTCCAATCGCTTCATAGATCATAATTCCATTTTCCTAGACACTGACTTTGATGATGATCCTGATCATGATGACAAAATTTTGCACATACTTGACCTCATAAGAACTTCAAGTGTTTTCAAATTCAAAGATGATCGGTTTCAGCAATCTTTCTATGGTCCTAACACGCAATTGAAAATACATCCGACTACTACTCTCTCAGACGTCGCAAGTGACATCAGTGACAGCATAGTGAATATAGAATTGGAAGACAGAGTTTATAACAATTTTCACCCGCCATCCTACGGCCTTAAGACACAGTTTATGCATCCGGCCACTACTCTATCAGAGGCAGGAGTAGTATTCAGAATGGATTCCGGCGATAGGAAGAGCATAATGGACATAGAATTCGAAGATGGAGTGTTTAATATTCCACCACTAGTCATTGGAGAGTTGACAGAATCACTCCTCAGGAACTTGATTGCATTTGAGCAATGCTATCATGGATGTTCGCATAAAATAACTTCATATGTGGTTCTAATGGATAACCTCATCGCTTCACAAAAGGATATGAATTTGTTTTGTGAGAAAAACATAATAACTACTAATTGGCGGAGTGCTGAATTAGACACGTATCAATTCTTCAACAAGCTTTATAAGGACACCTCGCTTAAGGAGTTCTTGTATGATGGACTGTGCTACCAAGTAAATGAACATTACCAAGTTGCACAGGACAAAAAGCTTCAAAGAATGAGGCGTGAGCTAAGAACTACTGCACAGTTGAAGCGTGATTATCTAACGTGGAATGTTACTTCAACAAGCCTCTGGAAAACTGTACTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

398

Amino Acids

46.69

Weight (kDa)

6.06

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 24 - 118 4.6e-23 Plant protein of unknown function
DUF247 PF03140 144 - 392 8.7e-43 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017280)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02490 FvH4_4g02490 FvH4_4g02490 FvH4_4g02490 FvH4_4g02490
rosa_chinensis RchiOBHm_Chr4g0389931
rosa_laevigata RLG00000009944 RLG00000015347
rosa_multiflora Rmu_sc0004336.1_g000027
rosa_roxburghii Rroxscaffold_5G00336000
rosa_rugosa Rorug03G0327200
rosa_samantha Rh4DG024100
rosa_wichuraiana Rw4G002310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 633, 1008
AatII GACGTC 1 cut(s) 579
Acc16I TGCGCA 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 178
AciI CCGC 2 cut(s) 647, 964
AclI AACGTT 1 cut(s) 242
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 684
AcsI RAATTY 4 cut(s) 450, 494, 758, 925
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 1 cut(s) 1188
AfiI CCNNNNNNNGG 4 cut(s) 178, 365, 656, 735
AflII CTTAAG 2 cut(s) 662, 1022
AflIII ACRYGT 1 cut(s) 981
AhlI ACTAGT 1 cut(s) 790
AjuI GAANNNNNNNTTGG 2 cut(s) 599, 631
AluBI AGCT 5 cut(s) 36, 193, 1003, 1093, 1114
AluI AGCT 5 cut(s) 36, 193, 1003, 1093, 1114
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 425
AoxI GGCC 3 cut(s) 111, 658, 684
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 4 cut(s) 450, 494, 758, 925
ArsI GACNNNNNNTTYG 4 cut(s) 404, 436, 743, 775
AseI ATTAAT 1 cut(s) 258
Asp700I GAANNNNTTC 2 cut(s) 329, 724
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 140, 530
AsuHPI GGTGA 2 cut(s) 41, 635
AsuII TTCGAA 1 cut(s) 762
AvaII GGWCC 2 cut(s) 140, 530
AxyI CCTNAGG 2 cut(s) 84, 821
BarI GAAGNNNNNNTAC 2 cut(s) 977, 1009
BbsI GAAGAC 1 cut(s) 627
BbvI GCAGC 1 cut(s) 53
BccI CCATC 3 cut(s) 658, 761, 1034
BceAI ACGGC 1 cut(s) 673
BclI TGATCA 2 cut(s) 310, 436
BcoDI GTCTC 1 cut(s) 91
BcuI ACTAGT 1 cut(s) 790
BfaI CTAG 2 cut(s) 410, 791
BfrI CTTAAG 2 cut(s) 662, 1022
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme18I GGWCC 2 cut(s) 140, 530
BmgT120I GGNCC 2 cut(s) 140, 530
BmiI GGNNCC 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 688
BmuI ACTGGG 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 627
Bpu14I TTCGAA 1 cut(s) 762
BsaAI YACGTR 1 cut(s) 984
BsaBI GATNNNNATC 2 cut(s) 429, 435
BsaHI GRCGYC 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 1019, 1049
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 365, 656, 735
Bse1I ACTGG 1 cut(s) 369
Bse21I CCTNAGG 2 cut(s) 84, 821
Bse3DI GCAATG 1 cut(s) 851
Bse8I GATNNNNATC 2 cut(s) 429, 435
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 4 cut(s) 553, 650, 679, 863
BseJI GATNNNNATC 2 cut(s) 429, 435
BseLI CCNNNNNNNGG 4 cut(s) 178, 365, 656, 735
BseMI GCAATG 1 cut(s) 851
BseMII CTCAG 3 cut(s) 98, 585, 835
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 809
BseXI GCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 1110
BshFI GGCC 3 cut(s) 113, 660, 686
BsiSI CCGG 2 cut(s) 683, 729
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 4 cut(s) 178, 365, 656, 735
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 3 cut(s) 113, 660, 686
Bsp119I TTCGAA 1 cut(s) 762
Bsp143I GATC 6 cut(s) 151, 310, 391, 430, 436, 505
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 2 cut(s) 647, 964
BspANI GGCC 3 cut(s) 113, 660, 686
BspCNI CTCAG 3 cut(s) 97, 584, 834
BspHI TCATGA 2 cut(s) 148, 439
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 1 cut(s) 425
BspQI GCTCTTC 1 cut(s) 734
BspT104I TTCGAA 1 cut(s) 762
BspTI CTTAAG 2 cut(s) 662, 1022
BsrDI GCAATG 1 cut(s) 851
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 6 cut(s) 151, 310, 391, 430, 436, 505
BssNI GRCGYC 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 177
Bst4CI ACNGT 5 cut(s) 43, 672, 1047, 1131, 1186
Bst6I CTCTTC 1 cut(s) 734
BstACI GRCGYC 1 cut(s) 576
BstAFI CTTAAG 2 cut(s) 662, 1022
BstBAI YACGTR 1 cut(s) 984
BstBI TTCGAA 1 cut(s) 762
BstDEI CTNAG 4 cut(s) 84, 571, 821, 1115
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 4 cut(s) 553, 650, 679, 863
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 6 cut(s) 154, 313, 394, 433, 439, 508
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 6 cut(s) 151, 310, 391, 430, 436, 505
BstNSI RCATGY 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 627
Bsu36I CCTNAGG 2 cut(s) 84, 821
BsuRI GGCC 3 cut(s) 113, 660, 686
BtgI CCRYGG 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 889
BtsCI GGATG 4 cut(s) 553, 650, 679, 863
BtsIMutI CAGTG 3 cut(s) 39, 414, 598
CciI TCATGA 2 cut(s) 148, 439
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 140, 530
Csp6I GTAC 1 cut(s) 1187
CviAII CATG 5 cut(s) 149, 178, 281, 440, 854
CviJI RGCY 9 cut(s) 36, 113, 193, 660, 686, 1003, 1093, 1114, 1173
CviKI_1 RGCY 9 cut(s) 36, 113, 193, 660, 686, 1003, 1093, 1114, 1173
CviQI GTAC 1 cut(s) 1187
DdeI CTNAG 4 cut(s) 84, 571, 821, 1115
DpnI GATC 6 cut(s) 153, 312, 393, 432, 438, 507
DpnII GATC 6 cut(s) 151, 310, 391, 430, 436, 505
EaeI YGGCCR 1 cut(s) 684
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
EciI GGCGGA 1 cut(s) 979
Eco130I CCWWGG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 140, 530
Eco81I CCTNAGG 2 cut(s) 84, 821
EcoRI GAATTC 1 cut(s) 758
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 2 cut(s) 12, 681
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 5 cut(s) 152, 181, 284, 443, 857
FalI AAGNNNNNCTT 4 cut(s) 314, 346, 1016, 1048
FaqI GGGAC 1 cut(s) 381
FatI CATG 5 cut(s) 148, 177, 280, 439, 853
FauI CCCGC 1 cut(s) 654
FauNDI CATATG 1 cut(s) 880
FbaI TGATCA 2 cut(s) 310, 436
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 4 cut(s) 540, 637, 666, 870
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 2 cut(s) 410, 791
FspI TGCGCA 1 cut(s) 221
GlaI GCGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 67
HaeIII GGCC 3 cut(s) 113, 660, 686
HapII CCGG 2 cut(s) 683, 729
HhaI GCGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 5 cut(s) 152, 181, 284, 443, 857
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HindIII AAGCTT 3 cut(s) 34, 1001, 1091
HinfI GANTC 3 cut(s) 46, 725, 812
HpaII CCGG 2 cut(s) 683, 729
HphI GGTGA 2 cut(s) 41, 635
Hpy166II GTNNAC 2 cut(s) 164, 807
Hpy188I TCNGA 5 cut(s) 77, 558, 574, 700, 719
Hpy188III TCNNGA 5 cut(s) 149, 434, 440, 823, 1177
Hpy8I GTNNAC 2 cut(s) 164, 807
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 5 cut(s) 43, 672, 1047, 1131, 1186
HpyCH4IV ACGT 4 cut(s) 242, 576, 983, 1151
HpyCH4V TGCA 9 cut(s) 10, 31, 69, 299, 457, 679, 836, 1079, 1127
HpyF3I CTNAG 4 cut(s) 84, 571, 821, 1115
HpySE526I ACGT 4 cut(s) 242, 576, 983, 1151
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 5 cut(s) 152, 181, 284, 443, 857
HspAI GCGC 1 cut(s) 220
Ksp22I TGATCA 2 cut(s) 310, 436
Kzo9I GATC 6 cut(s) 151, 310, 391, 430, 436, 505
LguI GCTCTTC 1 cut(s) 734
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 688
MaeI CTAG 2 cut(s) 410, 791
MaeII ACGT 4 cut(s) 242, 576, 983, 1151
MaeIII GTNAC 5 cut(s) 130, 206, 584, 593, 1159
MalI GATC 6 cut(s) 153, 312, 393, 432, 438, 507
MboI GATC 6 cut(s) 151, 310, 391, 430, 436, 505
MboII GAAGA 4 cut(s) 632, 751, 776, 985
MfeI CAATTG 2 cut(s) 135, 542
MmeI TCCRAC 1 cut(s) 581
MnlI CCTC 9 cut(s) 93, 149, 479, 694, 830, 911, 1027, 1098, 1184
Mph1103I ATGCAT 2 cut(s) 12, 681
MroXI GAANNNNTTC 2 cut(s) 329, 724
MseI TTAA 6 cut(s) 245, 258, 372, 663, 777, 1023
MslI CAYNNNNRTG 2 cut(s) 285, 338
MspCI CTTAAG 2 cut(s) 662, 1022
MspI CCGG 2 cut(s) 683, 729
MunI CAATTG 2 cut(s) 135, 542
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 880
NdeII GATC 6 cut(s) 151, 310, 391, 430, 436, 505
NlaIII CATG 5 cut(s) 152, 181, 284, 443, 857
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 3 cut(s) 130, 584, 593
NsbI TGCGCA 1 cut(s) 221
NsiI ATGCAT 2 cut(s) 12, 681
NspI RCATGY 1 cut(s) 284
NspV TTCGAA 1 cut(s) 762
PagI TCATGA 2 cut(s) 148, 439
PceI AGGCCT 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 734
PdmI GAANNNNTTC 2 cut(s) 329, 724
PfeI GAWTC 3 cut(s) 46, 725, 812
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 984
PshBI ATTAAT 1 cut(s) 258
PsiI TTATAA 2 cut(s) 633, 1008
Psp1406I AACGTT 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 140, 530
RsaI GTAC 1 cut(s) 1188
RsaNI GTAC 1 cut(s) 1187
RseI CAYNNNNRTG 2 cut(s) 285, 338
SapI GCTCTTC 1 cut(s) 734
SaqAI TTAA 6 cut(s) 245, 258, 372, 663, 777, 1023
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 6 cut(s) 151, 310, 391, 430, 436, 505
Sau96I GGNCC 2 cut(s) 140, 530
SfaNI GCATC 1 cut(s) 688
SfuI TTCGAA 1 cut(s) 762
SinI GGWCC 2 cut(s) 140, 530
SmiMI CAYNNNNRTG 2 cut(s) 285, 338
SmlI CTYRAG 2 cut(s) 662, 1022
SmoI CTYRAG 2 cut(s) 662, 1022
SpeI ACTAGT 1 cut(s) 790
SseBI AGGCCT 1 cut(s) 113
SsiI CCGC 2 cut(s) 647, 964
SspI AATATT 2 cut(s) 262, 781
SspMI CTAG 2 cut(s) 410, 791
StuI AGGCCT 1 cut(s) 113
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 5 cut(s) 43, 672, 1047, 1131, 1186
TaiI ACGT 4 cut(s) 245, 579, 986, 1154
TaqI TCGA 3 cut(s) 154, 267, 762
TatI WGTACW 1 cut(s) 1186
TfiI GAWTC 3 cut(s) 46, 725, 812
Tru1I TTAA 6 cut(s) 245, 258, 372, 663, 777, 1023
Tru9I TTAA 6 cut(s) 245, 258, 372, 663, 777, 1023
TscAI CASTG 3 cut(s) 46, 421, 598
TseFI GTSAC 3 cut(s) 130, 584, 593
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 3 cut(s) 130, 584, 593
TspDTI ATGAA 7 cut(s) 137, 322, 369, 376, 867, 938, 1077
TspRI CASTG 3 cut(s) 46, 421, 598
Van91I CCANNNNNTGG 1 cut(s) 178
Vha464I CTTAAG 2 cut(s) 662, 1022
VpaK11BI GGWCC 2 cut(s) 140, 530
VspI ATTAAT 1 cut(s) 258
XapI RAATTY 4 cut(s) 450, 494, 758, 925
XceI RCATGY 1 cut(s) 284
XmnI GAANNNNTTC 2 cut(s) 329, 724
XspI CTAG 2 cut(s) 410, 791
ZraI GACGTC 1 cut(s) 577
Zsp2I ATGCAT 2 cut(s) 12, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.