RLG00000015347

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017280
Physical Location & Seq
Forward (+)
64816726 .. 64818230
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015347

Sequence Viewer

Length: 1281 bp
ATGGGAAGTAAATCAAGTAATATAGGTGAAACTAGTCTGGATCATGATTGGACTTCCATTGATAAAGACAAAGATATTGCTGTTCAAGAATTGGAAATCAGCATTATAGCAAAACTAAACGGGGATTCACCAATGTCTCGTACAAGCTGCATCTTCAGAGTTCCCCAGGTGCTTCGGAGACAGAACCGAAAGGCATATCAACCTGATGTTATTGCAATCGGACCCTTGCATGATCGAAGCAGTAAACAATTTCAACACGTGGAAAATGTGAAACGCTGGTATTTACATCGCGTTCTCAACTCGGGCAGGAACATCAGTTTGAAAATGTTGATCGAAGCCATTCTTAAGTCTAGTACTATTACTGATGAGAGTGATCATGAATTGGGTATTTCACATGATCTGGTATTCAACTTAAACTGTCCGTTTCAATATCTTTGCCATGATCTTTTGCTGCTTAAGAATCAATTACCTTGGTTTGTTATTAAGTGCTTATATAGCATTCTGGTTGTGGACAAGCACCCTGATAAGTTTTCCCTCAAAAGTCTCGTACTCCCTGTCTTCTCCTCACTACCAGTGCTTCACCATCCACAGATCTATAGTTTTCAGTGTGAAATGGATCAGCGTAAAATTCTGCACATACTTGATCTGATAAGAACTTCACTTATTTACGAATTCAAAGACTATGATGTTGATCAGTTTTCTTCCTGCCTCCTGGATAAACAACTAATGCCTTGTGCGACAACTCTTGCACAAGCAGGTGTTCAGTTCTCCAACATGGACCATAGTATAATGAACATAACTTTCAGAGACAAGGTTTTCATAATTCCACAGATAGCAATCGGAGAGTCTACAGAATCATTATTCCGCAATCTCATTGCCTTTAAGCAATGCTACCGTGGTCATTCGCATATGGTGACATCCTATGTTGTCTTCATGGATCAACTCATCGCGCTAGCAAGGACATGGATTTCCTCTCAGAGGAGAATAATAGCTAATTGGCGGGGCAGTGATGATTCTTTCCAGTATTTCAACAAGCTTCATGAGGGCACCTCGCTCAAAAAGTTTCACTACCATGGAATCTGTGCCAAAGTGAACGAATATTACGCAAAGGACAAGTGGCTGAATACAATAATGCGTGAGTTTTCAACGGTAGAGAAATTGAAGCGTGATTATTTATCTAATCCATGGAAAGTTATTTCTGTGATTGCAGCAAGTATCCTTCTGTCTCTCACTGTTGTGCAGACGGTGCATACCATTAAGCAATATTATTACGTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

427

Amino Acids

49.36

Weight (kDa)

8.78

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 51 - 116 5.9e-14 Plant protein of unknown function
DUF247 PF03140 113 - 409 1.1e-54 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017280)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02490 FvH4_4g02490 FvH4_4g02490 FvH4_4g02490 FvH4_4g02490
rosa_chinensis RchiOBHm_Chr4g0389931
rosa_laevigata RLG00000009944 RLG00000015347
rosa_multiflora Rmu_sc0004336.1_g000027
rosa_roxburghii Rroxscaffold_5G00336000
rosa_rugosa Rorug03G0327200
rosa_samantha Rh4DG024100
rosa_wichuraiana Rw4G002310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 746
Acc36I ACCTGC 1 cut(s) 746
AccB1I GGYRCC 1 cut(s) 1046
AccI GTMKAC 1 cut(s) 848
AccII CGCG 2 cut(s) 291, 950
AciI CCGC 2 cut(s) 865, 1000
AclWI GGATC 3 cut(s) 48, 624, 945
AcsI RAATTY 2 cut(s) 627, 671
AcuI CTGAAG 1 cut(s) 139
AcvI CACGTG 1 cut(s) 259
AfaI GTAC 3 cut(s) 142, 355, 549
AfiI CCNNNNNNNGG 1 cut(s) 978
AflII CTTAAG 2 cut(s) 344, 455
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 9 cut(s) 86, 254, 322, 409, 428, 676, 1030, 1146, 1162
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 2 cut(s) 165, 711
AleI CACNNNNGTG 1 cut(s) 1235
AluBI AGCT 3 cut(s) 147, 992, 1036
AluI AGCT 3 cut(s) 147, 992, 1036
Alw26I GTCTC 5 cut(s) 141, 172, 548, 801, 1230
AlwI GGATC 3 cut(s) 48, 624, 945
Ama87I CYCGRG 1 cut(s) 301
ApeKI GCWGC 3 cut(s) 147, 451, 1208
ApoI RAATTY 2 cut(s) 627, 671
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 952
AspS9I GGNCC 2 cut(s) 221, 778
AsuHPI GGTGA 4 cut(s) 38, 120, 572, 925
AsuNHI GCTAGC 1 cut(s) 952
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 2 cut(s) 221, 778
BaeGI GKGCMC 1 cut(s) 1049
BanI GGYRCC 1 cut(s) 1046
BbrPI CACGTG 1 cut(s) 259
BbsI GAAGAC 2 cut(s) 550, 922
BbvI GCAGC 3 cut(s) 134, 438, 1220
BccI CCATC 1 cut(s) 591
BciT130I CCWGG 2 cut(s) 167, 713
BciVI GTATCC 1 cut(s) 1226
BclI TGATCA 2 cut(s) 373, 691
BcoDI GTCTC 5 cut(s) 141, 172, 548, 801, 1230
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 3 cut(s) 33, 351, 953
BfmI CTRYAG 2 cut(s) 595, 849
BfrI CTTAAG 2 cut(s) 344, 455
BfuAI ACCTGC 1 cut(s) 746
BfuI GTATCC 1 cut(s) 1226
BglII AGATCT 1 cut(s) 591
BisI GCNGC 3 cut(s) 148, 452, 1209
BlsI GCNGC 3 cut(s) 149, 453, 1210
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 2 cut(s) 167, 713
Bme18I GGWCC 2 cut(s) 221, 778
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 221, 778
BmiI GGNNCC 2 cut(s) 223, 1048
BmrFI CCNGG 2 cut(s) 167, 713
BmsI GCATC 1 cut(s) 159
BmtI GCTAGC 1 cut(s) 956
BpiI GAAGAC 2 cut(s) 550, 922
BplI GAGNNNNNCTC 2 cut(s) 1034, 1066
BsaAI YACGTR 1 cut(s) 259
BsaBI GATNNNNATC 2 cut(s) 690, 836
BsaJI CCNNGG 5 cut(s) 165, 470, 895, 1072, 1184
Bsc4I CCNNNNNNNGG 1 cut(s) 978
Bse1I ACTGG 2 cut(s) 572, 1021
Bse3DI GCAATG 2 cut(s) 873, 893
Bse8I GATNNNNATC 2 cut(s) 690, 836
BseBI CCWGG 2 cut(s) 167, 713
BseDI CCNNGG 5 cut(s) 165, 470, 895, 1072, 1184
BseGI GGATG 2 cut(s) 583, 917
BseJI GATNNNNATC 2 cut(s) 690, 836
BseLI CCNNNNNNNGG 1 cut(s) 978
BseMI GCAATG 2 cut(s) 873, 893
BseMII CTCAG 1 cut(s) 989
BseNI ACTGG 2 cut(s) 572, 1021
BseRI GAGGAG 2 cut(s) 553, 994
BseSI GKGCMC 1 cut(s) 1049
BseXI GCAGC 3 cut(s) 134, 438, 1220
BsgI GTGCAG 2 cut(s) 617, 1259
Bsh1236I CGCG 2 cut(s) 291, 950
BshNI GGYRCC 1 cut(s) 1046
BsiHKCI CYCGRG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 978
BsmAI GTCTC 5 cut(s) 141, 172, 548, 801, 1230
BsmI GAATGC 1 cut(s) 498
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 1049
Bsp19I CCATGG 2 cut(s) 1072, 1184
BspACI CCGC 2 cut(s) 865, 1000
BspCNI CTCAG 1 cut(s) 988
BspFNI CGCG 2 cut(s) 291, 950
BspHI TCATGA 3 cut(s) 43, 376, 1039
BspLI GGNNCC 2 cut(s) 223, 1048
BspMI ACCTGC 1 cut(s) 746
BspOI GCTAGC 1 cut(s) 956
BspPI GGATC 3 cut(s) 48, 624, 945
BspT107I GGYRCC 1 cut(s) 1046
BspTI CTTAAG 2 cut(s) 344, 455
BsrDI GCAATG 2 cut(s) 873, 893
BsrI ACTGG 2 cut(s) 572, 1021
BssECI CCNNGG 5 cut(s) 165, 470, 895, 1072, 1184
BssT1I CCWWGG 3 cut(s) 470, 1072, 1184
Bst2UI CCWGG 2 cut(s) 167, 713
Bst4CI ACNGT 5 cut(s) 419, 896, 1150, 1234, 1246
BstAFI CTTAAG 2 cut(s) 344, 455
BstAPI GCANNNNNTGC 1 cut(s) 1246
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 954
BstDEI CTNAG 1 cut(s) 975
BstDSI CCRYGG 3 cut(s) 895, 1072, 1184
BstENI CCTNNNNNAGG 1 cut(s) 976
BstF5I GGATG 2 cut(s) 583, 917
BstFNI CGCG 2 cut(s) 291, 950
BstHHI GCGC 1 cut(s) 952
BstMAI GTCTC 5 cut(s) 141, 172, 548, 801, 1230
BstMWI GCNNNNNNNGC 2 cut(s) 495, 1246
BstNI CCWGG 2 cut(s) 167, 713
BstSCI CCNGG 2 cut(s) 165, 711
BstSFI CTRYAG 2 cut(s) 595, 849
BstSLI GKGCMC 1 cut(s) 1049
BstUI CGCG 2 cut(s) 291, 950
BstV1I GCAGC 3 cut(s) 134, 438, 1220
BstV2I GAAGAC 2 cut(s) 550, 922
BstX2I RGATCY 1 cut(s) 591
BstYI RGATCY 1 cut(s) 591
BsuI GTATCC 1 cut(s) 1226
BtgI CCRYGG 3 cut(s) 895, 1072, 1184
BtgZI GCGATG 2 cut(s) 272, 931
BtsCI GGATG 2 cut(s) 583, 917
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 4 cut(s) 579, 611, 1012, 1230
BveI ACCTGC 1 cut(s) 746
Cac8I GCNNGC 1 cut(s) 954
CciI TCATGA 3 cut(s) 43, 376, 1039
CfoI GCGC 1 cut(s) 952
Cfr13I GGNCC 2 cut(s) 221, 778
Csp6I GTAC 3 cut(s) 141, 354, 548
CviJI RGCY 5 cut(s) 147, 338, 992, 1036, 1120
CviKI_1 RGCY 5 cut(s) 147, 338, 992, 1036, 1120
CviQI GTAC 3 cut(s) 141, 354, 548
DdeI CTNAG 1 cut(s) 975
Eco130I CCWWGG 3 cut(s) 470, 1072, 1184
Eco47I GGWCC 2 cut(s) 221, 778
Eco57I CTGAAG 1 cut(s) 139
Eco72I CACGTG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 976
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 2 cut(s) 165, 711
EcoT14I CCWWGG 3 cut(s) 470, 1072, 1184
ErhI CCWWGG 3 cut(s) 470, 1072, 1184
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FauI CCCGC 1 cut(s) 993
FauNDI CATATG 1 cut(s) 909
FbaI TGATCA 2 cut(s) 373, 691
FblI GTMKAC 1 cut(s) 848
Fnu4HI GCNGC 3 cut(s) 148, 452, 1209
FokI GGATG 2 cut(s) 570, 904
Fsp4HI GCNGC 3 cut(s) 148, 452, 1209
FspBI CTAG 3 cut(s) 33, 351, 953
GlaI GCGC 1 cut(s) 951
GluI GCNGC 3 cut(s) 148, 452, 1209
HhaI GCGC 1 cut(s) 952
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 6 cut(s) 125, 460, 845, 854, 1013, 1077
HphI GGTGA 4 cut(s) 38, 120, 572, 925
Hpy166II GTNNAC 4 cut(s) 245, 511, 849, 1093
Hpy188I TCNGA 7 cut(s) 158, 177, 221, 648, 806, 842, 978
Hpy188III TCNNGA 5 cut(s) 38, 44, 86, 377, 1040
Hpy8I GTNNAC 4 cut(s) 245, 511, 849, 1093
HpyAV CCTTC 1 cut(s) 1229
HpyCH4III ACNGT 5 cut(s) 419, 896, 1150, 1234, 1246
HpyCH4IV ACGT 2 cut(s) 258, 1272
HpyCH4V TGCA 8 cut(s) 150, 215, 229, 634, 749, 1208, 1240, 1249
HpyF10VI GCNNNNNNNGC 2 cut(s) 495, 1246
HpyF3I CTNAG 1 cut(s) 975
HpySE526I ACGT 2 cut(s) 258, 1272
HspAI GCGC 1 cut(s) 950
Ksp22I TGATCA 2 cut(s) 373, 691
Lsp1109I GCAGC 3 cut(s) 134, 438, 1220
LweI GCATC 1 cut(s) 159
MaeI CTAG 3 cut(s) 33, 351, 953
MaeII ACGT 2 cut(s) 258, 1272
MaeIII GTNAC 1 cut(s) 913
MboII GAAGA 4 cut(s) 145, 550, 693, 922
MflI RGATCY 1 cut(s) 591
MhlI GDGCHC 1 cut(s) 1049
MluCI AATT 9 cut(s) 89, 248, 380, 464, 627, 671, 822, 994, 1157
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 7 cut(s) 545, 574, 719, 972, 982, 1036, 1060
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 7 cut(s) 345, 413, 456, 483, 882, 1257, 1279
MslI CAYNNNNRTG 2 cut(s) 1071, 1235
MspCI CTTAAG 2 cut(s) 344, 455
MspR9I CCNGG 2 cut(s) 167, 713
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 2 cut(s) 167, 713
MvnI CGCG 2 cut(s) 291, 950
MwoI GCNNNNNNNGC 2 cut(s) 495, 1246
NcoI CCATGG 2 cut(s) 1072, 1184
NdeI CATATG 1 cut(s) 909
NheI GCTAGC 1 cut(s) 952
NlaIV GGNNCC 2 cut(s) 223, 1048
NmuCI GTSAC 1 cut(s) 913
OliI CACNNNNGTG 1 cut(s) 1235
PagI TCATGA 3 cut(s) 43, 376, 1039
PaqCI CACCTGC 1 cut(s) 746
PctI GAATGC 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 5 cut(s) 125, 460, 854, 1013, 1077
PfoI TCCNGGA 1 cut(s) 711
PkrI GCNGC 3 cut(s) 149, 453, 1210
PleI GAGTC 1 cut(s) 853
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 1 cut(s) 853
Ppu21I YACGTR 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 165, 711
PspCI CACGTG 1 cut(s) 259
PspGI CCWGG 2 cut(s) 165, 711
PspN4I GGNNCC 2 cut(s) 223, 1048
PspPI GGNCC 2 cut(s) 221, 778
PsrI GAACNNNNNNTAC 2 cut(s) 1085, 1117
PsuI RGATCY 1 cut(s) 591
RsaI GTAC 3 cut(s) 142, 355, 549
RsaNI GTAC 3 cut(s) 141, 354, 548
RseI CAYNNNNRTG 2 cut(s) 1071, 1235
SaqAI TTAA 7 cut(s) 345, 413, 456, 483, 882, 1257, 1279
SatI GCNGC 3 cut(s) 148, 452, 1209
Sau96I GGNCC 2 cut(s) 221, 778
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 2 cut(s) 167, 713
SduI GDGCHC 1 cut(s) 1049
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 2 cut(s) 595, 849
SinI GGWCC 2 cut(s) 221, 778
SmiMI CAYNNNNRTG 2 cut(s) 1071, 1235
SmlI CTYRAG 2 cut(s) 344, 455
SmoI CTYRAG 2 cut(s) 344, 455
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 9 cut(s) 89, 248, 380, 464, 627, 671, 822, 994, 1157
SsiI CCGC 2 cut(s) 865, 1000
SspI AATATT 2 cut(s) 1100, 1265
SspMI CTAG 3 cut(s) 33, 351, 953
StyD4I CCNGG 2 cut(s) 165, 711
StyI CCWWGG 3 cut(s) 470, 1072, 1184
TaaI ACNGT 5 cut(s) 419, 896, 1150, 1234, 1246
TaiI ACGT 2 cut(s) 261, 1275
TaqI TCGA 2 cut(s) 235, 333
TasI AATT 9 cut(s) 89, 248, 380, 464, 627, 671, 822, 994, 1157
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 5 cut(s) 125, 460, 854, 1013, 1077
Tru1I TTAA 7 cut(s) 345, 413, 456, 483, 882, 1257, 1279
Tru9I TTAA 7 cut(s) 345, 413, 456, 483, 882, 1257, 1279
TscAI CASTG 4 cut(s) 579, 611, 1012, 1237
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 3 cut(s) 147, 451, 1208
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 5 cut(s) 393, 806, 808, 922, 1028
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 4 cut(s) 579, 611, 1012, 1237
Vha464I CTTAAG 2 cut(s) 344, 455
VpaK11BI GGWCC 2 cut(s) 221, 778
XagI CCTNNNNNAGG 1 cut(s) 976
XapI RAATTY 2 cut(s) 627, 671
XmiI GTMKAC 1 cut(s) 848
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 3 cut(s) 33, 351, 953
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.